Prupe.7G088400_v2.0.a1

Sterile alpha motif.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0006591
Physical Location & Seq
Reverse (-)
12210828 .. 12213491
2664 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G088400.1

Sequence Viewer

Length: 780 bp
ATGGCAAAGAAAAGGCAAAGACAGCTGGTGGTTGCCCTGCACAAGAATAATACTCCCAGTGGTCTAATTGAGTCTTCAAACTCCGATAATGATCTTGATCTGCAAGATAGTTGGGTGATAGTTAAAAAGCAGAGAGTCAAAATTCTGATACCTCCGCTGCCTGTTATTAATAAATCTCCACCACCAAACCCAGGACCAATTCAGCTGCAACCTGTGGCCACAGAAGTGGCAGGCAATGGATCACAATTACCTGTTGAGACGTGTCCCAAAACGGCTTCAATTCATGAGCGAAAGAAGATTGAATCTCTTGCTCCCAAAAGGGGTATTCAGCTTACTAGAAAACGTCCTCCTGCTAAACACGTTTCAACATTTTCCAAGTCATATGGGCAAGATTTAAGAATGGAATTACGAAATCAAGATCAGATAGTTTCTTCTCAATGTCATAGAACTCTGGGAGTATCTAAAACCTCAAAATCTATCTTGCAGCCAAGGCGATCACATGGCCCAAGTATTTTCCTTGATCAGGGAATGTTGCTGAACCAAAGGCTAAGAGCTCTGAATCTTGAGAGGAAGCTTCAGAAAGCTGGCGGGTTAAGCCAGTGGCTAGCATCACTAGGACTGGGGCAGTTTGTTAGGATTTTCCAGAGGAAGGGTCTCAGTAAATTTCAGTTGGTTAATCTGACCATGAAGAAGCTCAAAGATATGGGTGCAAATGCAGTAGGGCCTAGGAGGAAGCTCATGCATGCAATCGACTGCTTCTGCCAGCCATGCTTTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAM_2

Protein Analysis

260

Amino Acids

29.0

Weight (kDa)

10.57

Isoelectric Point (pI)

58.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 155, 588
AclWI GGATC 1 cut(s) 247
AcoI YGGCCR 1 cut(s) 216
AcsI RAATTY 2 cut(s) 141, 662
AcuI CTGAAG 1 cut(s) 560
AfiI CCNNNNNNNGG 4 cut(s) 191, 320, 523, 649
AflIII ACRYGT 2 cut(s) 260, 358
AgsI TTSAA 4 cut(s) 78, 279, 302, 366
AjiI CACGTC 1 cut(s) 261
AjnI CCWGG 1 cut(s) 190
AleI CACNNNNGTG 1 cut(s) 224
AluBI AGCT 8 cut(s) 25, 205, 331, 554, 574, 584, 694, 736
AluI AGCT 8 cut(s) 25, 205, 331, 554, 574, 584, 694, 736
Alw21I GWGCWC 1 cut(s) 556
Alw26I GTCTC 2 cut(s) 251, 659
AlwI GGATC 1 cut(s) 247
AoxI GGCC 3 cut(s) 216, 502, 722
ApeKI GCWGC 3 cut(s) 157, 205, 484
ApoI RAATTY 2 cut(s) 141, 662
AseI ATTAAT 1 cut(s) 168
AspA2I CCTAGG 1 cut(s) 725
AspS9I GGNCC 3 cut(s) 194, 503, 722
AsuHPI GGTGA 1 cut(s) 127
AsuNHI GCTAGC 1 cut(s) 604
AvaII GGWCC 1 cut(s) 194
AvrII CCTAGG 1 cut(s) 725
BalI TGGCCA 1 cut(s) 218
BanII GRGCYC 1 cut(s) 556
BbsI GAAGAC 1 cut(s) 66
Bbv12I GWGCWC 1 cut(s) 556
BbvI GCAGC 3 cut(s) 144, 192, 496
BceAI ACGGC 1 cut(s) 288
BciT130I CCWGG 1 cut(s) 192
BclI TGATCA 1 cut(s) 520
BcoDI GTCTC 2 cut(s) 251, 659
BfaI CTAG 4 cut(s) 336, 605, 614, 726
BisI GCNGC 3 cut(s) 158, 206, 485
BlnI CCTAGG 1 cut(s) 725
BlsI GCNGC 3 cut(s) 159, 207, 486
Bme1390I CCNGG 1 cut(s) 192
Bme18I GGWCC 1 cut(s) 194
BmgBI CACGTC 1 cut(s) 261
BmgT120I GGNCC 3 cut(s) 194, 503, 722
BmrFI CCNGG 1 cut(s) 192
BmrI ACTGGG 2 cut(s) 51, 629
BmsI GCATC 1 cut(s) 617
BmtI GCTAGC 1 cut(s) 608
BmuI ACTGGG 2 cut(s) 51, 629
BpiI GAAGAC 1 cut(s) 66
BpuEI CTTGAG 1 cut(s) 584
BsaBI GATNNNNATC 2 cut(s) 90, 96
BsaI GGTCTC 1 cut(s) 659
BsaJI CCNNGG 3 cut(s) 190, 488, 725
Bsc4I CCNNNNNNNGG 4 cut(s) 191, 320, 523, 649
Bse1I ACTGG 3 cut(s) 57, 598, 624
Bse3DI GCAATG 1 cut(s) 241
Bse8I GATNNNNATC 2 cut(s) 90, 96
BseBI CCWGG 1 cut(s) 192
BseDI CCNNGG 3 cut(s) 190, 488, 725
BseJI GATNNNNATC 2 cut(s) 90, 96
BseLI CCNNNNNNNGG 4 cut(s) 191, 320, 523, 649
BseMI GCAATG 1 cut(s) 241
BseMII CTCAG 1 cut(s) 670
BseNI ACTGG 3 cut(s) 57, 598, 624
BseXI GCAGC 3 cut(s) 144, 192, 496
BsgI GTGCAG 1 cut(s) 23
BshFI GGCC 3 cut(s) 218, 504, 724
BsiHKAI GWGCWC 1 cut(s) 556
BslFI GGGAC 1 cut(s) 249
BslI CCNNNNNNNGG 4 cut(s) 191, 320, 523, 649
BsmAI GTCTC 2 cut(s) 251, 659
BsmBI CGTCTC 1 cut(s) 251
BsmFI GGGAC 1 cut(s) 249
BsnI GGCC 3 cut(s) 218, 504, 724
Bso31I GGTCTC 1 cut(s) 659
Bsp1286I GDGCHC 1 cut(s) 556
Bsp143I GATC 6 cut(s) 91, 97, 239, 418, 494, 520
BspACI CCGC 2 cut(s) 155, 588
BspANI GGCC 3 cut(s) 218, 504, 724
BspCNI CTCAG 1 cut(s) 669
BspHI TCATGA 1 cut(s) 283
BspOI GCTAGC 1 cut(s) 608
BspPI GGATC 1 cut(s) 247
BspTNI GGTCTC 1 cut(s) 659
BsrDI GCAATG 1 cut(s) 241
BsrI ACTGG 3 cut(s) 57, 598, 624
BssECI CCNNGG 3 cut(s) 190, 488, 725
BssMI GATC 6 cut(s) 91, 97, 239, 418, 494, 520
BssT1I CCWWGG 2 cut(s) 488, 725
Bst2UI CCWGG 1 cut(s) 192
BstC8I GCNNGC 5 cut(s) 232, 586, 606, 744, 764
BstDEI CTNAG 2 cut(s) 548, 656
BstENI CCTNNNNNAGG 1 cut(s) 521
BstKTI GATC 6 cut(s) 94, 100, 242, 421, 497, 523
BstMAI GTCTC 2 cut(s) 251, 659
BstMBI GATC 6 cut(s) 91, 97, 239, 418, 494, 520
BstMWI GCNNNNNNNGC 4 cut(s) 22, 490, 594, 768
BstNI CCWGG 1 cut(s) 192
BstNSI RCATGY 1 cut(s) 746
BstSCI CCNGG 1 cut(s) 190
BstV1I GCAGC 3 cut(s) 144, 192, 496
BstV2I GAAGAC 1 cut(s) 66
BstXI CCANNNNNNTGG 1 cut(s) 226
BsuRI GGCC 3 cut(s) 218, 504, 724
BtrI CACGTC 1 cut(s) 261
BtsIMutI CAGTG 2 cut(s) 64, 605
Cac8I GCNNGC 5 cut(s) 232, 586, 606, 744, 764
CciI TCATGA 1 cut(s) 283
Cfr13I GGNCC 3 cut(s) 194, 503, 722
CviAII CATG 6 cut(s) 284, 500, 685, 739, 743, 768
DdeI CTNAG 2 cut(s) 548, 656
DpnI GATC 6 cut(s) 93, 99, 241, 420, 496, 522
DpnII GATC 6 cut(s) 91, 97, 239, 418, 494, 520
EaeI YGGCCR 1 cut(s) 216
Ecl136II GAGCTC 1 cut(s) 554
Eco130I CCWWGG 2 cut(s) 488, 725
Eco24I GRGCYC 1 cut(s) 556
Eco31I GGTCTC 1 cut(s) 659
Eco47I GGWCC 1 cut(s) 194
Eco53kI GAGCTC 1 cut(s) 554
Eco57I CTGAAG 1 cut(s) 560
EcoICRI GAGCTC 1 cut(s) 554
EcoNI CCTNNNNNAGG 1 cut(s) 521
EcoO109I RGGNCCY 1 cut(s) 722
EcoRII CCWGG 1 cut(s) 190
EcoT14I CCWWGG 2 cut(s) 488, 725
EcoT22I ATGCAT 1 cut(s) 744
EcoT38I GRGCYC 1 cut(s) 556
ErhI CCWWGG 2 cut(s) 488, 725
Esp3I CGTCTC 1 cut(s) 251
FaeI CATG 6 cut(s) 287, 503, 688, 742, 746, 771
FaqI GGGAC 1 cut(s) 249
FatI CATG 6 cut(s) 283, 499, 684, 738, 742, 767
FauI CCCGC 1 cut(s) 581
FauNDI CATATG 1 cut(s) 382
FbaI TGATCA 1 cut(s) 520
Fnu4HI GCNGC 3 cut(s) 158, 206, 485
FriOI GRGCYC 1 cut(s) 556
Fsp4HI GCNGC 3 cut(s) 158, 206, 485
FspBI CTAG 4 cut(s) 336, 605, 614, 726
GluI GCNGC 3 cut(s) 158, 206, 485
HaeIII GGCC 3 cut(s) 218, 504, 724
Hin1II CATG 6 cut(s) 287, 503, 688, 742, 746, 771
HindIII AAGCTT 1 cut(s) 572
HinfI GANTC 4 cut(s) 71, 135, 302, 559
HphI GGTGA 1 cut(s) 127
Hpy188I TCNGA 6 cut(s) 85, 147, 423, 558, 579, 681
Hpy188III TCNNGA 5 cut(s) 95, 284, 416, 563, 643
HpyAV CCTTC 1 cut(s) 643
HpyCH4IV ACGT 3 cut(s) 260, 343, 360
HpyCH4V TGCA 8 cut(s) 40, 103, 208, 484, 710, 716, 742, 746
HpyF10VI GCNNNNNNNGC 4 cut(s) 22, 490, 594, 768
HpyF3I CTNAG 2 cut(s) 548, 656
HpySE526I ACGT 3 cut(s) 260, 343, 360
Hsp92II CATG 6 cut(s) 287, 503, 688, 742, 746, 771
Ksp22I TGATCA 1 cut(s) 520
Kzo9I GATC 6 cut(s) 91, 97, 239, 418, 494, 520
LmnI GCTCC 1 cut(s) 316
Lsp1109I GCAGC 3 cut(s) 144, 192, 496
LweI GCATC 1 cut(s) 617
MaeI CTAG 4 cut(s) 336, 605, 614, 726
MaeII ACGT 3 cut(s) 260, 343, 360
MalI GATC 6 cut(s) 93, 99, 241, 420, 496, 522
MboI GATC 6 cut(s) 91, 97, 239, 418, 494, 520
MboII GAAGA 4 cut(s) 66, 307, 423, 700
MhlI GDGCHC 1 cut(s) 556
MlsI TGGCCA 1 cut(s) 218
MluCI AATT 7 cut(s) 66, 141, 198, 245, 279, 404, 662
MluNI TGGCCA 1 cut(s) 218
MlyI GAGTC 2 cut(s) 80, 144
MnlI CCTC 6 cut(s) 162, 357, 478, 561, 639, 723
Mox20I TGGCCA 1 cut(s) 218
Mph1103I ATGCAT 1 cut(s) 744
MscI TGGCCA 1 cut(s) 218
MseI TTAA 6 cut(s) 123, 168, 395, 593, 675, 778
MslI CAYNNNNRTG 1 cut(s) 224
Msp20I TGGCCA 1 cut(s) 218
MspA1I CMGCKG 3 cut(s) 25, 157, 205
MspR9I CCNGG 1 cut(s) 192
MvaI CCWGG 1 cut(s) 192
MwoI GCNNNNNNNGC 4 cut(s) 22, 490, 594, 768
NdeI CATATG 1 cut(s) 382
NdeII GATC 6 cut(s) 91, 97, 239, 418, 494, 520
NheI GCTAGC 1 cut(s) 604
NlaIII CATG 6 cut(s) 287, 503, 688, 742, 746, 771
NsiI ATGCAT 1 cut(s) 744
NspI RCATGY 1 cut(s) 746
OliI CACNNNNGTG 1 cut(s) 224
PaeI GCATGC 1 cut(s) 746
PagI TCATGA 1 cut(s) 283
PfeI GAWTC 2 cut(s) 302, 559
PkrI GCNGC 3 cut(s) 159, 207, 486
PleI GAGTC 2 cut(s) 79, 143
PpsI GAGTC 2 cut(s) 79, 143
PshBI ATTAAT 1 cut(s) 168
Psp124BI GAGCTC 1 cut(s) 556
Psp6I CCWGG 1 cut(s) 190
PspGI CCWGG 1 cut(s) 190
PspPI GGNCC 3 cut(s) 194, 503, 722
PvuII CAGCTG 2 cut(s) 25, 205
RseI CAYNNNNRTG 1 cut(s) 224
SacI GAGCTC 1 cut(s) 556
SaqAI TTAA 6 cut(s) 123, 168, 395, 593, 675, 778
SatI GCNGC 3 cut(s) 158, 206, 485
Sau3AI GATC 6 cut(s) 91, 97, 239, 418, 494, 520
Sau96I GGNCC 3 cut(s) 194, 503, 722
SchI GAGTC 2 cut(s) 80, 144
ScrFI CCNGG 1 cut(s) 192
SduI GDGCHC 1 cut(s) 556
SfaNI GCATC 1 cut(s) 617
SinI GGWCC 1 cut(s) 194
SmiMI CAYNNNNRTG 1 cut(s) 224
SmlI CTYRAG 1 cut(s) 563
SmoI CTYRAG 1 cut(s) 563
SphI GCATGC 1 cut(s) 746
Sse9I AATT 7 cut(s) 66, 141, 198, 245, 279, 404, 662
SsiI CCGC 2 cut(s) 155, 588
SspMI CTAG 4 cut(s) 336, 605, 614, 726
SstI GAGCTC 1 cut(s) 556
StyD4I CCNGG 1 cut(s) 190
StyI CCWWGG 2 cut(s) 488, 725
TaiI ACGT 3 cut(s) 263, 346, 363
TaqI TCGA 1 cut(s) 750
TasI AATT 7 cut(s) 66, 141, 198, 245, 279, 404, 662
TfiI GAWTC 2 cut(s) 302, 559
Tru1I TTAA 6 cut(s) 123, 168, 395, 593, 675, 778
Tru9I TTAA 6 cut(s) 123, 168, 395, 593, 675, 778
TscAI CASTG 2 cut(s) 64, 605
TseI GCWGC 3 cut(s) 157, 205, 484
TspDTI ATGAA 2 cut(s) 272, 701
TspRI CASTG 2 cut(s) 64, 605
VpaK11BI GGWCC 1 cut(s) 194
VspI ATTAAT 1 cut(s) 168
XagI CCTNNNNNAGG 1 cut(s) 521
XapI RAATTY 2 cut(s) 141, 662
XceI RCATGY 1 cut(s) 746
XmaJI CCTAGG 1 cut(s) 725
XspI CTAG 4 cut(s) 336, 605, 614, 726
Zsp2I ATGCAT 1 cut(s) 744
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.