Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000775.1

Orthogroup ID

OG0006591

Physical Location & Seq

Genomic Coordinates Reverse (-)

49332 .. 50120

Gene Structure 789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000775.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

atggcgaagaaaaggcaaagacagctggtggaaaatcccccgcacaagaaaagtagtccgagtggtggtcttattgacgcttcaaactcagacaacgatctggatctgcaggatagttgggtgattgtcaaaaagcagagagtcaacattttagtacctggacttcctgttgctaataaatcaccactcccaagcccagaaccaagtcagctgcaacaactcgcggctagagaaacaacagtagaaagtggaccacagcttcctgcctatacacatcccaaaacgactttagttcatgagaaaaagaagattaaacctgttgcccctaaaagggctgtgcaacttgctaagaaagcttctcctgctgctggatacgttccaaccgtttcccagtcaatgaggcgagaattaagcacaaaatcacgaaccccagatcagatggctacttcacagtatcagagagcactaggagtatctatggcctcgaaagccatcatggagcgaagaagattacaacatgttttcctggatcagggaatgttgctgaatgaaaggctgagagctcggaatattgagaggaagattcagaatgctggtgggttaagcaggtggttagcatcattgggactggggcagtttgttagaatttttcagaggaaaggtttcagtaaatttcagttggtgaatttgaacatgaaaaagctcaaagatatgggtgcaaatgcagttgggccaagaaggaaattgatgcatgcaatagactgcttttgccaaccatcctattattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAM_2

Protein Analysis

262

Amino Acids

29.33

Weight (kDa)

10.61

Isoelectric Point (pI)

66.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006591)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11860 AT3G11890 AT3G11890 AT3G11890 AT3G11890 AT3G11890 AT3G11890 AT3G11890
fragaria_vesca	FvH4_6g21130 FvH4_6g21130
malus_domestica	MD14G1045900.v1.1
prunus_persica	Prupe.7G088400_v2.0.a1
pyrus_communis	pycom14g03850
rosa_chinensis	RchiOBHm_Chr3g0477561
rosa_laevigata	RLG00000023707 RLG00000023708
rosa_multiflora	Rmu_co8410605.1_g000001 Rmu_sc0000775.1_g000011
rosa_roxburghii	Rroxscaffold_6G00403840
rosa_rugosa	Rorug03G0162100
rosa_samantha	Rh3AG212000 Rh3BG245800 Rh3CG239400 Rh3DG238900 Rh5DG502100
rosa_wichuraiana	Rw3G019210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	597
Acc36I	ACCTGC	1 cut(s)	597
AccII	CGCG	1 cut(s)	224
AciI	CCGC	2 cut(s)	41, 224
AclWI	GGATC	2 cut(s)	111, 537
AcsI	RAATTY	3 cut(s)	645, 671, 685
AfaI	GTAC	1 cut(s)	156
AfiI	CCNNNNNNNGG	5 cut(s)	65, 330, 331, 368, 532
AflIII	ACRYGT	1 cut(s)	517
AgsI	TTSAA	2 cut(s)	84, 691
AjnI	CCWGG	2 cut(s)	157, 525
AluBI	AGCT	6 cut(s)	25, 211, 259, 356, 563, 703
AluI	AGCT	6 cut(s)	25, 211, 259, 356, 563, 703
Alw21I	GWGCWC	2 cut(s)	466, 565
AlwI	GGATC	2 cut(s)	111, 537
AoxI	GGCC	2 cut(s)	480, 731
ApeKI	GCWGC	2 cut(s)	211, 365
ApoI	RAATTY	3 cut(s)	645, 671, 685
Asp700I	GAANNNNTTC	1 cut(s)	662
AspS9I	GGNCC	2 cut(s)	251, 731
AsuHPI	GGTGA	3 cut(s)	133, 174, 694
AvaII	GGWCC	1 cut(s)	251
BanII	GRGCYC	1 cut(s)	565
BarI	GAAGNNNNNNTAC	2 cut(s)	147, 179
Bbv12I	GWGCWC	2 cut(s)	466, 565
BbvI	GCAGC	2 cut(s)	198, 352
BccI	CCATC	3 cut(s)	433, 500, 784
BciT130I	CCWGG	2 cut(s)	159, 527
BciVI	GTATCC	1 cut(s)	365
BfaI	CTAG	2 cut(s)	228, 467
BfmI	CTRYAG	1 cut(s)	107
BfuAI	ACCTGC	1 cut(s)	597
BfuI	GTATCC	1 cut(s)	365
BisI	GCNGC	3 cut(s)	212, 225, 366
BlsI	GCNGC	3 cut(s)	213, 226, 367
Bme1390I	CCNGG	2 cut(s)	159, 527
Bme18I	GGWCC	1 cut(s)	251
BmgT120I	GGNCC	2 cut(s)	251, 731
BmrFI	CCNGG	2 cut(s)	159, 527
BmrI	ACTGGG	2 cut(s)	385, 638
BmsI	GCATC	2 cut(s)	626, 738
BmuI	ACTGGG	2 cut(s)	385, 638
BsaBI	GATNNNNATC	1 cut(s)	102
Bsc4I	CCNNNNNNNGG	5 cut(s)	65, 330, 331, 368, 532
Bse1I	ACTGG	2 cut(s)	391, 633
Bse8I	GATNNNNATC	1 cut(s)	102
BseBI	CCWGG	2 cut(s)	159, 527
BseGI	GGATG	2 cut(s)	274, 776
BseJI	GATNNNNATC	1 cut(s)	102
BseLI	CCNNNNNNNGG	5 cut(s)	65, 330, 331, 368, 532
BseMII	CTCAG	2 cut(s)	102, 548
BseNI	ACTGG	2 cut(s)	391, 633
BseXI	GCAGC	2 cut(s)	198, 352
Bsh1236I	CGCG	1 cut(s)	224
BshFI	GGCC	2 cut(s)	482, 733
BsiHKAI	GWGCWC	2 cut(s)	466, 565
BslFI	GGGAC	1 cut(s)	639
BslI	CCNNNNNNNGG	5 cut(s)	65, 330, 331, 368, 532
BsmFI	GGGAC	1 cut(s)	639
BsmI	GAATGC	1 cut(s)	595
BsnI	GGCC	2 cut(s)	482, 733
Bsp1286I	GDGCHC	2 cut(s)	466, 565
Bsp143I	GATC	4 cut(s)	97, 103, 433, 529
BspACI	CCGC	2 cut(s)	41, 224
BspANI	GGCC	2 cut(s)	482, 733
BspCNI	CTCAG	2 cut(s)	101, 549
BspFNI	CGCG	1 cut(s)	224
BspHI	TCATGA	1 cut(s)	295
BspMAI	CTGCAG	1 cut(s)	111
BspMI	ACCTGC	1 cut(s)	597
BspPI	GGATC	2 cut(s)	111, 537
BsrI	ACTGG	2 cut(s)	391, 633
BssMI	GATC	4 cut(s)	97, 103, 433, 529
Bst2UI	CCWGG	2 cut(s)	159, 527
Bst4CI	ACNGT	3 cut(s)	241, 385, 453
BstC8I	GCNNGC	1 cut(s)	753
BstDEI	CTNAG	3 cut(s)	88, 348, 557
BstENI	CCTNNNNNAGG	1 cut(s)	530
BstF5I	GGATG	2 cut(s)	274, 776
BstFNI	CGCG	1 cut(s)	224
BstKTI	GATC	4 cut(s)	100, 106, 436, 532
BstMBI	GATC	4 cut(s)	97, 103, 433, 529
BstMWI	GCNNNNNNNGC	4 cut(s)	22, 353, 362, 488
BstNI	CCWGG	2 cut(s)	159, 527
BstNSI	RCATGY	2 cut(s)	521, 755
BstSCI	CCNGG	2 cut(s)	157, 525
BstSFI	CTRYAG	1 cut(s)	107
BstUI	CGCG	1 cut(s)	224
BstV1I	GCAGC	2 cut(s)	198, 352
BstX2I	RGATCY	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	103
BsuI	GTATCC	1 cut(s)	365
BsuRI	GGCC	2 cut(s)	482, 733
BtsCI	GGATG	2 cut(s)	274, 776
BveI	ACCTGC	1 cut(s)	597
Cac8I	GCNNGC	1 cut(s)	753
CciI	TCATGA	1 cut(s)	295
Cfr13I	GGNCC	2 cut(s)	251, 731
CseI	GACGC	1 cut(s)	86
Csp6I	GTAC	1 cut(s)	155
CviAII	CATG	5 cut(s)	296, 496, 518, 694, 752
CviQI	GTAC	1 cut(s)	155
DdeI	CTNAG	3 cut(s)	88, 348, 557
DpnI	GATC	4 cut(s)	99, 105, 435, 531
DpnII	GATC	4 cut(s)	97, 103, 433, 529
Ecl136II	GAGCTC	1 cut(s)	563
Eco24I	GRGCYC	1 cut(s)	565
Eco47I	GGWCC	1 cut(s)	251
Eco53kI	GAGCTC	1 cut(s)	563
EcoICRI	GAGCTC	1 cut(s)	563
EcoNI	CCTNNNNNAGG	1 cut(s)	530
EcoRII	CCWGG	2 cut(s)	157, 525
EcoT22I	ATGCAT	1 cut(s)	753
EcoT38I	GRGCYC	1 cut(s)	565
FaeI	CATG	5 cut(s)	299, 499, 521, 697, 755
FaiI	YATR	8 cut(s)	270, 297, 479, 497, 519, 695, 713, 753
FaqI	GGGAC	1 cut(s)	639
FatI	CATG	5 cut(s)	295, 495, 517, 693, 751
FauI	CCCGC	1 cut(s)	48
Fnu4HI	GCNGC	3 cut(s)	212, 225, 366
FokI	GGATG	2 cut(s)	261, 763
FriOI	GRGCYC	1 cut(s)	565
Fsp4HI	GCNGC	3 cut(s)	212, 225, 366
FspBI	CTAG	2 cut(s)	228, 467
GluI	GCNGC	3 cut(s)	212, 225, 366
HaeIII	GGCC	2 cut(s)	482, 733
HgaI	GACGC	1 cut(s)	86
Hin1II	CATG	5 cut(s)	299, 499, 521, 697, 755
HincII	GTYRAC	1 cut(s)	145
HindII	GTYRAC	1 cut(s)	145
HindIII	AAGCTT	1 cut(s)	354
HinfI	GANTC	2 cut(s)	141, 583
HphI	GGTGA	3 cut(s)	133, 174, 694
Hpy166II	GTNNAC	2 cut(s)	145, 251
Hpy188I	TCNGA	7 cut(s)	60, 91, 438, 459, 567, 588, 654
Hpy188III	TCNNGA	3 cut(s)	101, 296, 423
Hpy8I	GTNNAC	2 cut(s)	145, 251
HpyAV	CCTTC	1 cut(s)	732
HpyCH4III	ACNGT	3 cut(s)	241, 385, 453
HpyCH4IV	ACGT	1 cut(s)	375
HpyCH4V	TGCA	7 cut(s)	109, 214, 340, 719, 725, 751, 755
HpyF10VI	GCNNNNNNNGC	4 cut(s)	22, 353, 362, 488
HpyF3I	CTNAG	3 cut(s)	88, 348, 557
HpySE526I	ACGT	1 cut(s)	375
Hsp92II	CATG	5 cut(s)	299, 499, 521, 697, 755
Kzo9I	GATC	4 cut(s)	97, 103, 433, 529
LmnI	GCTCC	1 cut(s)	499
Lsp1109I	GCAGC	2 cut(s)	198, 352
LweI	GCATC	2 cut(s)	626, 738
MaeI	CTAG	2 cut(s)	228, 467
MaeII	ACGT	1 cut(s)	375
MalI	GATC	4 cut(s)	99, 105, 435, 531
MboI	GATC	4 cut(s)	97, 103, 433, 529
MboII	GAAGA	5 cut(s)	19, 319, 516, 519, 592
MflI	RGATCY	1 cut(s)	103
MhlI	GDGCHC	2 cut(s)	466, 565
MluCI	AATT	5 cut(s)	407, 645, 671, 685, 743
MlyI	GAGTC	1 cut(s)	150
MmeI	TCCRAC	1 cut(s)	404
MnlI	CCTC	4 cut(s)	393, 493, 570, 648
Mph1103I	ATGCAT	1 cut(s)	753
MroXI	GAANNNNTTC	1 cut(s)	662
MseI	TTAA	4 cut(s)	312, 410, 602, 787
MspA1I	CMGCKG	2 cut(s)	25, 211
MspR9I	CCNGG	2 cut(s)	159, 527
Mva1269I	GAATGC	1 cut(s)	595
MvaI	CCWGG	2 cut(s)	159, 527
MvnI	CGCG	1 cut(s)	224
MwoI	GCNNNNNNNGC	4 cut(s)	22, 353, 362, 488
NdeII	GATC	4 cut(s)	97, 103, 433, 529
NlaIII	CATG	5 cut(s)	299, 499, 521, 697, 755
NsiI	ATGCAT	1 cut(s)	753
NspI	RCATGY	2 cut(s)	521, 755
PaeI	GCATGC	1 cut(s)	755
PagI	TCATGA	1 cut(s)	295
PaqCI	CACCTGC	1 cut(s)	597
PciI	ACATGT	1 cut(s)	517
PcsI	WCGNNNNNNNCGW	1 cut(s)	381
PctI	GAATGC	1 cut(s)	595
PdmI	GAANNNNTTC	1 cut(s)	662
PfeI	GAWTC	1 cut(s)	583
PfoI	TCCNGGA	1 cut(s)	525
PkrI	GCNGC	3 cut(s)	213, 226, 367
PleI	GAGTC	1 cut(s)	149
PpsI	GAGTC	1 cut(s)	149
PscI	ACATGT	1 cut(s)	517
Psp124BI	GAGCTC	1 cut(s)	565
Psp6I	CCWGG	2 cut(s)	157, 525
PspGI	CCWGG	2 cut(s)	157, 525
PspPI	GGNCC	2 cut(s)	251, 731
PstI	CTGCAG	1 cut(s)	111
PsuI	RGATCY	1 cut(s)	103
PvuII	CAGCTG	2 cut(s)	25, 211
RsaI	GTAC	1 cut(s)	156
RsaNI	GTAC	1 cut(s)	155
SacI	GAGCTC	1 cut(s)	565
SaqAI	TTAA	4 cut(s)	312, 410, 602, 787
SatI	GCNGC	3 cut(s)	212, 225, 366
Sau3AI	GATC	4 cut(s)	97, 103, 433, 529
Sau96I	GGNCC	2 cut(s)	251, 731
SchI	GAGTC	1 cut(s)	150
ScrFI	CCNGG	2 cut(s)	159, 527
SduI	GDGCHC	2 cut(s)	466, 565
SfaNI	GCATC	2 cut(s)	626, 738
SfcI	CTRYAG	1 cut(s)	107
SinI	GGWCC	1 cut(s)	251
SphI	GCATGC	1 cut(s)	755
Sse9I	AATT	5 cut(s)	407, 645, 671, 685, 743
SsiI	CCGC	2 cut(s)	41, 224
SspI	AATATT	1 cut(s)	571
SspMI	CTAG	2 cut(s)	228, 467
SstI	GAGCTC	1 cut(s)	565
StyD4I	CCNGG	2 cut(s)	157, 525
TaaI	ACNGT	3 cut(s)	241, 385, 453
TaiI	ACGT	1 cut(s)	378
TaqI	TCGA	1 cut(s)	485
TasI	AATT	5 cut(s)	407, 645, 671, 685, 743
TauI	GCSGC	1 cut(s)	227
TfiI	GAWTC	1 cut(s)	583
Tru1I	TTAA	4 cut(s)	312, 410, 602, 787
Tru9I	TTAA	4 cut(s)	312, 410, 602, 787
TseI	GCWGC	2 cut(s)	211, 365
TspDTI	ATGAA	3 cut(s)	284, 564, 710
VpaK11BI	GGWCC	1 cut(s)	251
XagI	CCTNNNNNAGG	1 cut(s)	530
XapI	RAATTY	3 cut(s)	645, 671, 685
XceI	RCATGY	2 cut(s)	521, 755
XmnI	GAANNNNTTC	1 cut(s)	662
XspI	CTAG	2 cut(s)	228, 467
Zsp2I	ATGCAT	1 cut(s)	753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.