MD14G1091600.v1.1

L-2-hydroxyglutarate dehydrogenase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
Physical Location & Seq
Forward (+)
13663098 .. 13663478
381 bp
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UTR
Exon/CDS
Intron
MD14G1091600.v1.1.491

Sequence Viewer

Length: 381 bp
ATGCTGAAAAGCACATTGGACAGAATTGTGAGGAGTCATCGTAATGTTACTTCTAGTTGCAGTATCAGTATCAATAGCATCAGCGGAGTTCCCAAAGAGAAGGTAGATTGCGTGGTAATAGGGGCAGGTGTGATGGGATTGGCAGTGGCGAGAGAGCTTGCTCTAAAGGGCAGAGAGGTGTTGGTGTTAGATTCAGCTCCCACCTTCAGCACTTCCACCAGCTCCCGTAATAGCGAGGTCATCCATGCCGGTATCTACTACCCGACCCATTCCCTCAAGGTACCCACAAAATCAAATATAAAAGTCATAAACTTTAATGTCAAGAAATTCCCAATTCTTAATTTGAATGTTGAAAGCACAATGTATCCTTTAACTTTTTAA

Protein Analysis

127

Amino Acids

13.71

Weight (kDa)

9.74

Isoelectric Point (pI)

34.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DAO PF01266 36 - 90 2.1e-15 FAD dependent oxidoreductase
NAD_binding_8 PF13450 39 - 78 7.5e-07 NAD(P)-binding Rossmann-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 116
Acc36I ACCTGC 1 cut(s) 116
Acc65I GGTACC 1 cut(s) 280
AccB1I GGYRCC 1 cut(s) 280
AciI CCGC 1 cut(s) 84
AcsI RAATTY 1 cut(s) 326
AcuI CTGAAG 1 cut(s) 190
AfaI GTAC 1 cut(s) 282
AgsI TTSAA 2 cut(s) 346, 353
AjuI GAANNNNNNNTTGG 1 cut(s) 31
AluBI AGCT 3 cut(s) 157, 197, 222
AluI AGCT 3 cut(s) 157, 197, 222
ApoI RAATTY 1 cut(s) 326
Asp718I GGTACC 1 cut(s) 280
BanI GGYRCC 1 cut(s) 280
BarI GAAGNNNNNNTAC 2 cut(s) 34, 66
BccI CCATC 1 cut(s) 127
BciVI GTATCC 1 cut(s) 375
BfaI CTAG 1 cut(s) 54
BfuAI ACCTGC 1 cut(s) 116
BfuI GTATCC 1 cut(s) 375
BmiI GGNNCC 1 cut(s) 282
BmsI GCATC 1 cut(s) 87
BpuEI CTTGAG 1 cut(s) 260
BsaXI ACNNNNNCTCC 2 cut(s) 25, 55
Bse118I RCCGGY 1 cut(s) 248
BseGI GGATG 1 cut(s) 240
BseRI GAGGAG 1 cut(s) 46
BshNI GGYRCC 1 cut(s) 280
BsiSI CCGG 1 cut(s) 249
BspACI CCGC 1 cut(s) 84
BspLI GGNNCC 1 cut(s) 282
BspMI ACCTGC 1 cut(s) 116
BspT107I GGYRCC 1 cut(s) 280
BsrFI RCCGGY 1 cut(s) 248
BssAI RCCGGY 1 cut(s) 248
BstC8I GCNNGC 1 cut(s) 159
BstF5I GGATG 1 cut(s) 240
BsuI GTATCC 1 cut(s) 375
BtsCI GGATG 1 cut(s) 240
BtsI GCAGTG 1 cut(s) 150
BtsIMutI CAGTG 1 cut(s) 150
BveI ACCTGC 1 cut(s) 116
Cac8I GCNNGC 1 cut(s) 159
Cfr10I RCCGGY 1 cut(s) 248
Csp6I GTAC 1 cut(s) 281
CviAII CATG 1 cut(s) 245
CviJI RGCY 3 cut(s) 157, 197, 222
CviKI_1 RGCY 3 cut(s) 157, 197, 222
CviQI GTAC 1 cut(s) 281
Eco57I CTGAAG 1 cut(s) 190
FaeI CATG 1 cut(s) 248
FaiI YATR 3 cut(s) 246, 299, 308
FatI CATG 1 cut(s) 244
FokI GGATG 1 cut(s) 227
FspBI CTAG 1 cut(s) 54
HapII CCGG 1 cut(s) 249
Hin1II CATG 1 cut(s) 248
HinfI GANTC 2 cut(s) 34, 191
HpaII CCGG 1 cut(s) 249
Hpy188III TCNNGA 1 cut(s) 322
HpyAV CCTTC 2 cut(s) 94, 214
HpyCH4V TGCA 1 cut(s) 60
Hsp92II CATG 1 cut(s) 248
KpnI GGTACC 1 cut(s) 284
LmnI GCTCC 2 cut(s) 202, 227
LpnPI CCDG 3 cut(s) 111, 232, 262
LweI GCATC 1 cut(s) 87
MaeI CTAG 1 cut(s) 54
MaeIII GTNAC 1 cut(s) 46
MluCI AATT 4 cut(s) 24, 326, 333, 340
MlyI GAGTC 1 cut(s) 43
MnlI CCTC 4 cut(s) 24, 169, 229, 284
MseI TTAA 4 cut(s) 315, 339, 371, 379
MslI CAYNNNNRTG 1 cut(s) 42
MspA1I CMGCKG 1 cut(s) 84
MspI CCGG 1 cut(s) 249
NlaIII CATG 1 cut(s) 248
NlaIV GGNNCC 1 cut(s) 282
PaqCI CACCTGC 1 cut(s) 116
PfeI GAWTC 1 cut(s) 191
PleI GAGTC 1 cut(s) 42
PpsI GAGTC 1 cut(s) 42
PspN4I GGNNCC 1 cut(s) 282
RsaI GTAC 1 cut(s) 282
RsaNI GTAC 1 cut(s) 281
RseI CAYNNNNRTG 1 cut(s) 42
SaqAI TTAA 4 cut(s) 315, 339, 371, 379
SchI GAGTC 1 cut(s) 43
SetI ASST 9 cut(s) 105, 130, 159, 180, 199, 206, 224, 240, 282
SfaNI GCATC 1 cut(s) 87
SmiMI CAYNNNNRTG 1 cut(s) 42
SmlI CTYRAG 1 cut(s) 275
SmoI CTYRAG 1 cut(s) 275
Sse9I AATT 4 cut(s) 24, 326, 333, 340
SsiI CCGC 1 cut(s) 84
SspMI CTAG 1 cut(s) 54
TasI AATT 4 cut(s) 24, 326, 333, 340
TfiI GAWTC 1 cut(s) 191
Tru1I TTAA 4 cut(s) 315, 339, 371, 379
Tru9I TTAA 4 cut(s) 315, 339, 371, 379
TscAI CASTG 1 cut(s) 150
TspRI CASTG 1 cut(s) 150
XapI RAATTY 1 cut(s) 326
XspI CTAG 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.