Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000971

Physical Location & Seq

Genomic Coordinates Reverse (-)

44319024 .. 44325032

Gene Structure 6009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45750

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGCTGAAAACAACACTTGAGAGATTGGAGAGGAACTTGTCATGGTCGGTTTTGAAGAGTGTGTGGAGTCGTAATTATTGTATGAGCAGTGGAATCCCGAGAGAGAGAGTAGAGTGCGTGGTGATAGGAGCAGGTGTAGTGGGATTATCAGTGGCTAGAGAGCTTGCTTTAAGAGGTCGACAGGTCTTAGTCCTAGACTCTGCTCCCACCTTCGGCACTGCCACCAGTTCCCGCAACAGCGAAGTTATCCATGCCGGCATCTACTACCCTCCTAATTCTCTCAAGGCAATCTTTTGTGTAAGAGGAAGAGACTTGCTGTACAAATATTGCTCTCAGCGCCAAATTCCTCACAAACAAATTGGTAAACTCATTGTTGCCACTGGATCGTCTGAGATTCAAAAGTTGCATAATTTACTGGATCGTGGGATTAAAAATGGGGTCGATGGTCTGGTGATGATGGAGGGTTCCGAAGCCATGAGAATGGAACCCGAATTAAGATGCTTGAAAGCCTTACTATCACCAGTTTCTGGGATTGTCGATACACATTCTTTGATGCTGTCTTTGGTGGGTGAAGCTGAGAATTGTGGCACAATCTTCTGCTATAACACTACTGTTATTGGTGGCCACATAGAACAAAATCAATTGTGCCTTCATATTTCTCAAACCAAACATCTTGAAATGTGCAATGGAAATTCTCCCCTGCAACCAGAGATAGTACTCATTCCTAAGTTTGTAGTGAACTCTGCTGGCTTGAGTGCCCCTGCCCTTGCTAAGCGATTTGATGGCCTCCAAAGTGCAGTTATTCCCACTGCTCATTATGCTCGTGGGTGCTACTTCACTCTATCCAATACTGGAATCTGTCCTTTCAAACATTTGATATATCCTATACCAGAGGACGGTGGCCTTGGAGTGCATGTTACTTTGGATTTAAATGGTCAGGTCAAGTTTGGTCCGAATGTGGATTGGATTGATGGAATTGATGACATTTCAAGCTTCCTGAATAAGTTTGACTATTCCGTATGTACGAGTCACATGAAGCATTTTTACCCTGAGATAAAGAAGTACTACCCGAATCTAAAAGATGAATCCCTCGAGCCAGGTTATGCAGGGATTAGACCGAAGCTTTCAGGTCCTAGACAGTCTCCAGTTGATTTTGTGATACAGGGAGAGGATATTCATGGGATAACTGGTCTTGTCAACCTTTTTGGAATCGAGTCACCTGGTTTAACTTCAAGCATGGCGATTGCCGAGCACATAGCCACCAAATTCTTCAGATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003973 GO:0005488 GO:0008150 GO:0008152 GO:0016491 GO:0016614 GO:0016899 GO:0036094 GO:0043167 GO:0043168 GO:0047545 GO:0048037 GO:0050660 GO:0050662 GO:0055114 GO:0071949 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DAO

Protein Analysis

426

Amino Acids

46.79

Weight (kDa)

7.92

Isoelectric Point (pI)

42.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAO	PF01266	39 - 420	8.7e-53	FAD dependent oxidoreductase
NAD_binding_8	PF13450	41 - 79	9.5e-07	NAD(P)-binding Rossmann-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000971)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56840
fragaria_vesca	FvH4_1g29380 FvH4_1g29380 FvH4_1g29380 FvH4_1g29380 FvH4_1g29380 FvH4_1g29380 FvH4_1g29380 FvH4_1g29380
malus_domestica	MD14G1091600.v1.1 MD14G1100100.v1.1
prunus_persica	Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1
pyrus_communis	pycom14g09020
rosa_chinensis	RchiOBHm_Chr3g0495031
rosa_laevigata	RLG00000022654
rosa_multiflora	Rmu_ssc0000058.1_g000010
rosa_roxburghii	Rroxscaffold_6G00390830
rosa_rugosa	Rorug03G0269400
rosa_samantha	Rh3AG318400 Rh3BG353500 Rh3CG350400 Rh3DG352800
rosa_wichuraiana	Rw0G014470 Rw0G015070 Rw3G027760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	122
Acc36I	ACCTGC	1 cut(s)	122
AccB7I	CCANNNNNTGG	1 cut(s)	527
AccI	GTMKAC	1 cut(s)	178
AciI	CCGC	1 cut(s)	232
AclWI	GGATC	2 cut(s)	391, 426
AcoI	YGGCCR	1 cut(s)	622
AcsI	RAATTY	3 cut(s)	342, 691, 1265
AcuI	CTGAAG	1 cut(s)	1255
AfaI	GTAC	4 cut(s)	320, 717, 1024, 1064
AfiI	CCNNNNNNNGG	3 cut(s)	212, 527, 896
AgsI	TTSAA	7 cut(s)	55, 398, 505, 677, 868, 990, 1233
AjnI	CCWGG	2 cut(s)	1096, 1219
AluBI	AGCT	4 cut(s)	163, 575, 993, 1123
AluI	AGCT	4 cut(s)	163, 575, 993, 1123
Alw21I	GWGCWC	1 cut(s)	1254
Alw26I	GTCTC	2 cut(s)	303, 1146
AlwI	GGATC	2 cut(s)	391, 426
AlwNI	CAGNNNCTG	1 cut(s)	527
Ama87I	CYCGRG	2 cut(s)	97, 1091
AoxI	GGCC	3 cut(s)	622, 784, 901
ApoI	RAATTY	3 cut(s)	342, 691, 1265
AspLEI	GCGC	1 cut(s)	339
AspS9I	GGNCC	2 cut(s)	950, 1130
AsuHPI	GGTGA	5 cut(s)	133, 463, 510, 581, 1209
AvaI	CYCGRG	2 cut(s)	97, 1091
AvaII	GGWCC	2 cut(s)	950, 1130
BaeGI	GKGCMC	1 cut(s)	760
BalI	TGGCCA	1 cut(s)	624
BarI	GAAGNNNNNNTAC	2 cut(s)	1028, 1060
BauI	CACGAG	1 cut(s)	822
Bbv12I	GWGCWC	1 cut(s)	1254
BccI	CCATC	4 cut(s)	437, 451, 776, 965
BciT130I	CCWGG	2 cut(s)	1098, 1221
BcoDI	GTCTC	2 cut(s)	303, 1146
BfaI	CTAG	3 cut(s)	156, 194, 1134
BfoI	RGCGCY	1 cut(s)	340
BfuAI	ACCTGC	1 cut(s)	122
BlpI	GCTNAGC	1 cut(s)	771
BmcAI	AGTACT	2 cut(s)	717, 1064
Bme1390I	CCNGG	2 cut(s)	1098, 1221
Bme18I	GGWCC	2 cut(s)	950, 1130
BmeT110I	CYCGRG	2 cut(s)	97, 1091
BmgT120I	GGNCC	2 cut(s)	950, 1130
BmiI	GGNNCC	2 cut(s)	466, 486
BmrFI	CCNGG	2 cut(s)	1098, 1221
BmsI	GCATC	3 cut(s)	267, 488, 543
BpmI	CTGGAG	1 cut(s)	1128
Bpu1102I	GCTNAGC	1 cut(s)	771
BpuEI	CTTGAG	3 cut(s)	38, 266, 772
BsaJI	CCNNGG	1 cut(s)	904
BsaXI	ACNNNNNCTCC	4 cut(s)	120, 150, 900, 930
Bsc4I	CCNNNNNNNGG	3 cut(s)	212, 527, 896
Bse118I	RCCGGY	1 cut(s)	254
Bse1I	ACTGG	7 cut(s)	225, 385, 420, 521, 856, 1145, 1192
Bse3DI	GCAATG	1 cut(s)	691
BseBI	CCWGG	2 cut(s)	1098, 1221
BseDI	CCNNGG	1 cut(s)	904
BseLI	CCNNNNNNNGG	3 cut(s)	212, 527, 896
BseMI	GCAATG	1 cut(s)	691
BseMII	CTCAG	4 cut(s)	347, 381, 567, 1041
BseNI	ACTGG	7 cut(s)	225, 385, 420, 521, 856, 1145, 1192
BseSI	GKGCMC	1 cut(s)	760
BsgI	GTGCAG	1 cut(s)	816
BshFI	GGCC	3 cut(s)	624, 786, 903
BsiHKAI	GWGCWC	1 cut(s)	1254
BsiHKCI	CYCGRG	2 cut(s)	97, 1091
BsiSI	CCGG	1 cut(s)	255
BslI	CCNNNNNNNGG	3 cut(s)	212, 527, 896
BsmAI	GTCTC	2 cut(s)	303, 1146
BsnI	GGCC	3 cut(s)	624, 786, 903
BsoBI	CYCGRG	2 cut(s)	97, 1091
Bsp1286I	GDGCHC	2 cut(s)	760, 1254
Bsp1407I	TGTACA	1 cut(s)	318
Bsp143I	GATC	2 cut(s)	383, 418
Bsp1720I	GCTNAGC	1 cut(s)	771
BspACI	CCGC	1 cut(s)	232
BspANI	GGCC	3 cut(s)	624, 786, 903
BspCNI	CTCAG	4 cut(s)	346, 382, 568, 1042
BspLI	GGNNCC	2 cut(s)	466, 486
BspMI	ACCTGC	1 cut(s)	122
BspPI	GGATC	2 cut(s)	391, 426
BsrDI	GCAATG	1 cut(s)	691
BsrFI	RCCGGY	1 cut(s)	254
BsrGI	TGTACA	1 cut(s)	318
BsrI	ACTGG	7 cut(s)	225, 385, 420, 521, 856, 1145, 1192
BssAI	RCCGGY	1 cut(s)	254
BssECI	CCNNGG	1 cut(s)	904
BssMI	GATC	2 cut(s)	383, 418
BssSI	CACGAG	1 cut(s)	822
BssT1I	CCWWGG	1 cut(s)	904
Bst2BI	CACGAG	1 cut(s)	822
Bst2UI	CCWGG	2 cut(s)	1098, 1221
Bst4CI	ACNGT	3 cut(s)	613, 899, 1140
Bst6I	CTCTTC	2 cut(s)	50, 301
BstAUI	TGTACA	1 cut(s)	318
BstC8I	GCNNGC	3 cut(s)	165, 256, 748
BstDEI	CTNAG	7 cut(s)	187, 333, 390, 576, 726, 771, 1050
BstH2I	RGCGCY	1 cut(s)	340
BstHHI	GCGC	1 cut(s)	339
BstKTI	GATC	2 cut(s)	386, 421
BstMAI	GTCTC	2 cut(s)	303, 1146
BstMBI	GATC	2 cut(s)	383, 418
BstMWI	GCNNNNNNNGC	2 cut(s)	336, 818
BstNI	CCWGG	2 cut(s)	1098, 1221
BstNSI	RCATGY	1 cut(s)	917
BstSCI	CCNGG	2 cut(s)	1096, 1219
BstSLI	GKGCMC	1 cut(s)	760
BstXI	CCANNNNNNTGG	1 cut(s)	481
BsuRI	GGCC	3 cut(s)	624, 786, 903
BtsI	GCAGTG	3 cut(s)	94, 216, 807
BtsIMutI	CAGTG	5 cut(s)	94, 156, 216, 378, 807
BveI	ACCTGC	1 cut(s)	122
Cac8I	GCNNGC	3 cut(s)	165, 256, 748
CaiI	CAGNNNCTG	1 cut(s)	527
CfoI	GCGC	1 cut(s)	339
Cfr10I	RCCGGY	1 cut(s)	254
Cfr13I	GGNCC	2 cut(s)	950, 1130
CsiI	ACCWGGT	1 cut(s)	1219
Csp6I	GTAC	4 cut(s)	319, 716, 1023, 1063
CviAII	CATG	7 cut(s)	42, 251, 475, 914, 1033, 1178, 1237
CviQI	GTAC	4 cut(s)	319, 716, 1023, 1063
DdeI	CTNAG	7 cut(s)	187, 333, 390, 576, 726, 771, 1050
DpnI	GATC	2 cut(s)	385, 420
DpnII	GATC	2 cut(s)	383, 418
DraI	TTTAAA	1 cut(s)	930
EaeI	YGGCCR	1 cut(s)	622
Eam1104I	CTCTTC	2 cut(s)	50, 301
EarI	CTCTTC	2 cut(s)	50, 301
Eco130I	CCWWGG	1 cut(s)	904
Eco47I	GGWCC	2 cut(s)	950, 1130
Eco57I	CTGAAG	1 cut(s)	1255
Eco88I	CYCGRG	2 cut(s)	97, 1091
EcoO109I	RGGNCCY	1 cut(s)	1130
EcoRII	CCWGG	2 cut(s)	1096, 1219
EcoT14I	CCWWGG	1 cut(s)	904
ErhI	CCWWGG	1 cut(s)	904
FaeI	CATG	7 cut(s)	45, 254, 478, 917, 1036, 1181, 1240
FalI	AAGNNNNNCTT	2 cut(s)	275, 307
FatI	CATG	7 cut(s)	41, 250, 474, 913, 1032, 1177, 1236
FauI	CCCGC	1 cut(s)	239
FblI	GTMKAC	1 cut(s)	178
FspBI	CTAG	3 cut(s)	156, 194, 1134
GlaI	GCGC	1 cut(s)	338
GsuI	CTGGAG	1 cut(s)	1128
HaeII	RGCGCY	1 cut(s)	340
HaeIII	GGCC	3 cut(s)	624, 786, 903
HapII	CCGG	1 cut(s)	255
HhaI	GCGC	1 cut(s)	339
Hin1II	CATG	7 cut(s)	45, 254, 478, 917, 1036, 1181, 1240
Hin6I	GCGC	1 cut(s)	337
HinP1I	GCGC	1 cut(s)	337
HincII	GTYRAC	2 cut(s)	179, 1198
HindII	GTYRAC	2 cut(s)	179, 1198
HindIII	AAGCTT	2 cut(s)	991, 1121
HpaII	CCGG	1 cut(s)	255
HphI	GGTGA	5 cut(s)	133, 463, 510, 581, 1209
Hpy166II	GTNNAC	4 cut(s)	179, 365, 739, 1198
Hpy188I	TCNGA	4 cut(s)	391, 469, 954, 1274
Hpy188III	TCNNGA	3 cut(s)	97, 674, 997
Hpy8I	GTNNAC	4 cut(s)	179, 365, 739, 1198
HpyAV	CCTTC	2 cut(s)	220, 659
HpyCH4III	ACNGT	3 cut(s)	613, 899, 1140
HpyCH4V	TGCA	6 cut(s)	406, 684, 703, 797, 913, 1106
HpyF10VI	GCNNNNNNNGC	2 cut(s)	336, 818
HpyF3I	CTNAG	7 cut(s)	187, 333, 390, 576, 726, 771, 1050
Hsp92II	CATG	7 cut(s)	45, 254, 478, 917, 1036, 1181, 1240
HspAI	GCGC	1 cut(s)	337
KroI	GCCGGC	1 cut(s)	254
KroNI	GCCGGC	1 cut(s)	256
Kzo9I	GATC	2 cut(s)	383, 418
LmnI	GCTCC	2 cut(s)	128, 208
LweI	GCATC	3 cut(s)	267, 488, 543
MabI	ACCWGGT	1 cut(s)	1219
MaeI	CTAG	3 cut(s)	156, 194, 1134
MaeIII	GTNAC	3 cut(s)	916, 1028, 1215
MalI	GATC	2 cut(s)	385, 420
MboI	GATC	2 cut(s)	383, 418
MboII	GAAGA	4 cut(s)	67, 318, 586, 1261
MfeI	CAATTG	1 cut(s)	641
MhlI	GDGCHC	2 cut(s)	760, 1254
MlsI	TGGCCA	1 cut(s)	624
MluNI	TGGCCA	1 cut(s)	624
MlyI	GAGTC	4 cut(s)	76, 191, 1036, 1223
Mox20I	TGGCCA	1 cut(s)	624
MroNI	GCCGGC	1 cut(s)	254
MscI	TGGCCA	1 cut(s)	624
MseI	TTAA	6 cut(s)	170, 429, 494, 929, 1226, 1279
MslI	CAYNNNNRTG	1 cut(s)	479
Msp20I	TGGCCA	1 cut(s)	624
MspI	CCGG	1 cut(s)	255
MspR9I	CCNGG	2 cut(s)	1098, 1221
MunI	CAATTG	1 cut(s)	641
MvaI	CCWGG	2 cut(s)	1098, 1221
MwoI	GCNNNNNNNGC	2 cut(s)	336, 818
NaeI	GCCGGC	1 cut(s)	256
NdeII	GATC	2 cut(s)	383, 418
NgoMIV	GCCGGC	1 cut(s)	254
NlaIII	CATG	7 cut(s)	45, 254, 478, 917, 1036, 1181, 1240
NlaIV	GGNNCC	2 cut(s)	466, 486
NmeAIII	GCCGAG	1 cut(s)	1273
NmuCI	GTSAC	2 cut(s)	1028, 1215
NspI	RCATGY	1 cut(s)	917
PaeR7I	CTCGAG	1 cut(s)	1091
PaqCI	CACCTGC	1 cut(s)	122
PdiI	GCCGGC	1 cut(s)	256
PfeI	GAWTC	6 cut(s)	93, 394, 855, 1072, 1085, 1209
PflMI	CCANNNNNTGG	1 cut(s)	527
PleI	GAGTC	4 cut(s)	75, 191, 1035, 1222
PpsI	GAGTC	4 cut(s)	75, 191, 1035, 1222
PpuMI	RGGWCCY	1 cut(s)	1130
Psp5II	RGGWCCY	1 cut(s)	1130
Psp6I	CCWGG	2 cut(s)	1096, 1219
PspGI	CCWGG	2 cut(s)	1096, 1219
PspN4I	GGNNCC	2 cut(s)	466, 486
PspPI	GGNCC	2 cut(s)	950, 1130
PspPPI	RGGWCCY	1 cut(s)	1130
PspXI	VCTCGAGB	1 cut(s)	1091
PstNI	CAGNNNCTG	1 cut(s)	527
RsaI	GTAC	4 cut(s)	320, 717, 1024, 1064
RsaNI	GTAC	4 cut(s)	319, 716, 1023, 1063
RseI	CAYNNNNRTG	1 cut(s)	479
SalI	GTCGAC	1 cut(s)	177
SaqAI	TTAA	6 cut(s)	170, 429, 494, 929, 1226, 1279
Sau3AI	GATC	2 cut(s)	383, 418
Sau96I	GGNCC	2 cut(s)	950, 1130
ScaI	AGTACT	2 cut(s)	717, 1064
SchI	GAGTC	4 cut(s)	76, 191, 1036, 1223
ScrFI	CCNGG	2 cut(s)	1098, 1221
SduI	GDGCHC	2 cut(s)	760, 1254
SexAI	ACCWGGT	1 cut(s)	1219
SfaNI	GCATC	3 cut(s)	267, 488, 543
Sfr274I	CTCGAG	1 cut(s)	1091
SinI	GGWCC	2 cut(s)	950, 1130
SlaI	CTCGAG	1 cut(s)	1091
SmiI	ATTTAAAT	1 cut(s)	930
SmiMI	CAYNNNNRTG	1 cut(s)	479
SmlI	CTYRAG	4 cut(s)	17, 281, 751, 1091
SmoI	CTYRAG	4 cut(s)	17, 281, 751, 1091
SsiI	CCGC	1 cut(s)	232
SspI	AATATT	1 cut(s)	326
SspMI	CTAG	3 cut(s)	156, 194, 1134
StyD4I	CCNGG	2 cut(s)	1096, 1219
StyI	CCWWGG	1 cut(s)	904
SwaI	ATTTAAAT	1 cut(s)	930
TaaI	ACNGT	3 cut(s)	613, 899, 1140
TaqI	TCGA	5 cut(s)	178, 441, 537, 1092, 1212
TaqII	GACCGA	1 cut(s)	1132
TatI	WGTACW	3 cut(s)	318, 715, 1062
TfiI	GAWTC	6 cut(s)	93, 394, 855, 1072, 1085, 1209
Tru1I	TTAA	6 cut(s)	170, 429, 494, 929, 1226, 1279
Tru9I	TTAA	6 cut(s)	170, 429, 494, 929, 1226, 1279
TscAI	CASTG	5 cut(s)	94, 156, 223, 385, 814
TseFI	GTSAC	2 cut(s)	1028, 1215
Tsp45I	GTSAC	2 cut(s)	1028, 1215
TspDTI	ATGAA	4 cut(s)	641, 1049, 1098, 1166
TspGWI	ACGGA	1 cut(s)	1006
TspRI	CASTG	5 cut(s)	94, 156, 223, 385, 814
Van91I	CCANNNNNTGG	1 cut(s)	527
VpaK11BI	GGWCC	2 cut(s)	950, 1130
XapI	RAATTY	3 cut(s)	342, 691, 1265
XceI	RCATGY	1 cut(s)	917
XhoI	CTCGAG	1 cut(s)	1091
XmiI	GTMKAC	1 cut(s)	178
XspI	CTAG	3 cut(s)	156, 194, 1134
ZrmI	AGTACT	2 cut(s)	717, 1064

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.