Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0000971

Physical Location & Seq

Genomic Coordinates Reverse (-)

41576684 .. 41580136

Gene Structure 3453 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG353500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGCTGAAGAGATTGGAGAGCAACTCGGTTTTGAAGAGTGTGTGGAGTCGTAATTATTGTATGAGCAGTGGAATCCCGAGAGAGAGAGTAGAGTGCGTGGTGATAGGAGCTGGTGTAGTGGGATTATCAGTGGCTAGAGAGCTTGCTTTAAGAGGTCGACAGGTCTTAGTCCTAGACTCTGCTCCCACCTTCGGCACTGCCACCAGTTCCCGCAACAGCGAAGTTATCCATGCCGGCATCTACTACCCTCCTAAGTCTCTCAAGGCACTCTTTTGTGTAAGAGGAAGAGACTTGCTGTACAAATATTGCTCTCAGCGCCAAATTCCTCACAAACAAATTGGTAAACTCATTGTTGCTACTGGATCTTCTGAGATTCCAAAGTTGCATTATTTAATGGATTGTGGGATTAAAAATGGGGTCGATGGTCTGGTAATGATGGAGGGTTCCGAAGCCATGAGAATAGAACCCGAATTAAGATGCTTGAAAGCCTTACTATCACCAGTTTCTGGGATTGTCGATACACATTCTTTGATGCTGTCTTTGGTGGGTGAAGCTGAGAATTGTGGCACAATCTTCTGCTATAACACTACTGTTATTGGTGGCCACATAGAACAAAATCAATTGTGCCTTCATATTTCTCAAACCAAACATCTTGAAATGTGCAATGGAAACTCTCCCCTGCAACCAGAGATAGTACTCATTCCTAAGGTTGTAGTGAACTCTGCTGGCTTGAGTGCCCCTGCCCTTGCTAAGCGATTTGATGGCCTCCAAAGTGCAGTTATTCCCACTGCTCATTATGCTCGTGGGTGCTACTTCACTCTATCCAATACTGGAATCTGTCCTTTCAAACATTTGATATATCCTATACCAGAGGACGGTGGCCTTGGAGTGCATGTTACTTTGGATTTAAATGGTCAGGTCAAGTTTGGTCCGAATGTGGATTGGATTGATGGAATTGATGACATTTCAAGCTTCCTGAATAAGTTTGACTATTCCGTATGTACGAGTCACATGAAGCATTTTTACCCTGAGATAAAGAAGTACTACCCGAATCTAAAAGATGAATCCCTCGAGCCAGGTTATGCAGGGATTAGACCGAAGCTTTCAGGTCCTGGACAGTCTCCAGTTGATTTTGTGATACAGGGAGAGGATATTCATGGGATAACTGGTCTTGTCAACCTTTTTGGAATCGAGTCACCTGGTTTAACTTCAAGCATGGCGATTGCCGAGCACATAGCCACCAAATTCTTCAGATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003973 GO:0005488 GO:0008150 GO:0008152 GO:0016491 GO:0016614 GO:0016899 GO:0036094 GO:0043167 GO:0043168 GO:0047545 GO:0048037 GO:0050660 GO:0050662 GO:0055114 GO:0071949 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DAO

Protein Analysis

419

Amino Acids

45.73

Weight (kDa)

7.55

Isoelectric Point (pI)

45.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAO	PF01266	32 - 413	2.1e-51	FAD dependent oxidoreductase
NAD_binding_8	PF13450	34 - 72	1e-06	NAD(P)-binding Rossmann-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000971)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56840
fragaria_vesca	FvH4_1g29380 FvH4_1g29380 FvH4_1g29380 FvH4_1g29380 FvH4_1g29380 FvH4_1g29380 FvH4_1g29380 FvH4_1g29380
malus_domestica	MD14G1091600.v1.1 MD14G1100100.v1.1
prunus_persica	Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1
pyrus_communis	pycom14g09020
rosa_chinensis	RchiOBHm_Chr3g0495031
rosa_laevigata	RLG00000022654
rosa_multiflora	Rmu_ssc0000058.1_g000010
rosa_roxburghii	Rroxscaffold_6G00390830
rosa_rugosa	Rorug03G0269400
rosa_samantha	Rh3AG318400 Rh3BG353500 Rh3CG350400 Rh3DG352800
rosa_wichuraiana	Rw0G014470 Rw0G015070 Rw3G027760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	506
AccI	GTMKAC	1 cut(s)	157
AciI	CCGC	1 cut(s)	211
AclWI	GGATC	1 cut(s)	370
AcoI	YGGCCR	1 cut(s)	601
AcsI	RAATTY	2 cut(s)	321, 1244
AcuI	CTGAAG	2 cut(s)	26, 1234
AfaI	GTAC	4 cut(s)	299, 696, 1003, 1043
AfiI	CCNNNNNNNGG	3 cut(s)	191, 506, 875
AgsI	TTSAA	6 cut(s)	34, 484, 656, 847, 969, 1212
AjnI	CCWGG	3 cut(s)	1075, 1111, 1198
AluBI	AGCT	5 cut(s)	110, 142, 554, 972, 1102
AluI	AGCT	5 cut(s)	110, 142, 554, 972, 1102
Alw21I	GWGCWC	1 cut(s)	1233
Alw26I	GTCTC	3 cut(s)	261, 282, 1125
AlwI	GGATC	1 cut(s)	370
AlwNI	CAGNNNCTG	2 cut(s)	506, 1112
Ama87I	CYCGRG	2 cut(s)	76, 1070
AoxI	GGCC	3 cut(s)	601, 763, 880
ApoI	RAATTY	2 cut(s)	321, 1244
AspLEI	GCGC	1 cut(s)	318
AspS9I	GGNCC	2 cut(s)	929, 1109
AsuHPI	GGTGA	4 cut(s)	112, 489, 560, 1188
AvaI	CYCGRG	2 cut(s)	76, 1070
AvaII	GGWCC	2 cut(s)	929, 1109
AxyI	CCTNAGG	1 cut(s)	705
BaeGI	GKGCMC	1 cut(s)	739
BalI	TGGCCA	1 cut(s)	603
BarI	GAAGNNNNNNTAC	2 cut(s)	1007, 1039
BauI	CACGAG	1 cut(s)	801
Bbv12I	GWGCWC	1 cut(s)	1233
BccI	CCATC	4 cut(s)	416, 430, 755, 944
BciT130I	CCWGG	3 cut(s)	1077, 1113, 1200
BcoDI	GTCTC	3 cut(s)	261, 282, 1125
BfaI	CTAG	2 cut(s)	135, 173
BfoI	RGCGCY	1 cut(s)	319
BlpI	GCTNAGC	1 cut(s)	750
BmcAI	AGTACT	2 cut(s)	696, 1043
Bme1390I	CCNGG	3 cut(s)	1077, 1113, 1200
Bme18I	GGWCC	2 cut(s)	929, 1109
BmeT110I	CYCGRG	2 cut(s)	76, 1070
BmgT120I	GGNCC	2 cut(s)	929, 1109
BmiI	GGNNCC	1 cut(s)	445
BmrFI	CCNGG	3 cut(s)	1077, 1113, 1200
BmsI	GCATC	3 cut(s)	246, 467, 522
BplI	GAGNNNNNCTC	2 cut(s)	8, 40
BpmI	CTGGAG	1 cut(s)	1107
Bpu1102I	GCTNAGC	1 cut(s)	750
BpuEI	CTTGAG	2 cut(s)	245, 751
BsaJI	CCNNGG	1 cut(s)	883
BsaXI	ACNNNNNCTCC	4 cut(s)	99, 129, 879, 909
Bsc4I	CCNNNNNNNGG	3 cut(s)	191, 506, 875
Bse118I	RCCGGY	1 cut(s)	233
Bse1I	ACTGG	6 cut(s)	204, 364, 500, 835, 1124, 1171
Bse21I	CCTNAGG	1 cut(s)	705
Bse3DI	GCAATG	1 cut(s)	670
BseBI	CCWGG	3 cut(s)	1077, 1113, 1200
BseDI	CCNNGG	1 cut(s)	883
BseLI	CCNNNNNNNGG	3 cut(s)	191, 506, 875
BseMI	GCAATG	1 cut(s)	670
BseMII	CTCAG	4 cut(s)	326, 360, 546, 1020
BseNI	ACTGG	6 cut(s)	204, 364, 500, 835, 1124, 1171
BseSI	GKGCMC	1 cut(s)	739
BsgI	GTGCAG	1 cut(s)	795
BshFI	GGCC	3 cut(s)	603, 765, 882
BsiHKAI	GWGCWC	1 cut(s)	1233
BsiHKCI	CYCGRG	2 cut(s)	76, 1070
BsiSI	CCGG	1 cut(s)	234
BslI	CCNNNNNNNGG	3 cut(s)	191, 506, 875
BsmAI	GTCTC	3 cut(s)	261, 282, 1125
BsnI	GGCC	3 cut(s)	603, 765, 882
BsoBI	CYCGRG	2 cut(s)	76, 1070
Bsp1286I	GDGCHC	2 cut(s)	739, 1233
Bsp1407I	TGTACA	1 cut(s)	297
Bsp143I	GATC	1 cut(s)	362
Bsp1720I	GCTNAGC	1 cut(s)	750
BspACI	CCGC	1 cut(s)	211
BspANI	GGCC	3 cut(s)	603, 765, 882
BspCNI	CTCAG	4 cut(s)	325, 361, 547, 1021
BspLI	GGNNCC	1 cut(s)	445
BspPI	GGATC	1 cut(s)	370
BsrDI	GCAATG	1 cut(s)	670
BsrFI	RCCGGY	1 cut(s)	233
BsrGI	TGTACA	1 cut(s)	297
BsrI	ACTGG	6 cut(s)	204, 364, 500, 835, 1124, 1171
BssAI	RCCGGY	1 cut(s)	233
BssECI	CCNNGG	1 cut(s)	883
BssMI	GATC	1 cut(s)	362
BssSI	CACGAG	1 cut(s)	801
BssT1I	CCWWGG	1 cut(s)	883
Bst2BI	CACGAG	1 cut(s)	801
Bst2UI	CCWGG	3 cut(s)	1077, 1113, 1200
Bst4CI	ACNGT	3 cut(s)	592, 878, 1119
Bst6I	CTCTTC	3 cut(s)	2, 29, 280
BstAUI	TGTACA	1 cut(s)	297
BstC8I	GCNNGC	3 cut(s)	144, 235, 727
BstDEI	CTNAG	8 cut(s)	166, 252, 312, 369, 555, 705, 750, 1029
BstH2I	RGCGCY	1 cut(s)	319
BstHHI	GCGC	1 cut(s)	318
BstKTI	GATC	1 cut(s)	365
BstMAI	GTCTC	3 cut(s)	261, 282, 1125
BstMBI	GATC	1 cut(s)	362
BstMWI	GCNNNNNNNGC	2 cut(s)	315, 797
BstNI	CCWGG	3 cut(s)	1077, 1113, 1200
BstNSI	RCATGY	1 cut(s)	896
BstSCI	CCNGG	3 cut(s)	1075, 1111, 1198
BstSLI	GKGCMC	1 cut(s)	739
BstX2I	RGATCY	1 cut(s)	362
BstYI	RGATCY	1 cut(s)	362
Bsu36I	CCTNAGG	1 cut(s)	705
BsuRI	GGCC	3 cut(s)	603, 765, 882
BtsI	GCAGTG	3 cut(s)	73, 195, 786
BtsIMutI	CAGTG	4 cut(s)	73, 135, 195, 786
Cac8I	GCNNGC	3 cut(s)	144, 235, 727
CaiI	CAGNNNCTG	2 cut(s)	506, 1112
CfoI	GCGC	1 cut(s)	318
Cfr10I	RCCGGY	1 cut(s)	233
Cfr13I	GGNCC	2 cut(s)	929, 1109
CsiI	ACCWGGT	1 cut(s)	1198
Csp6I	GTAC	4 cut(s)	298, 695, 1002, 1042
CviAII	CATG	6 cut(s)	230, 454, 893, 1012, 1157, 1216
CviQI	GTAC	4 cut(s)	298, 695, 1002, 1042
DdeI	CTNAG	8 cut(s)	166, 252, 312, 369, 555, 705, 750, 1029
DpnI	GATC	1 cut(s)	364
DpnII	GATC	1 cut(s)	362
DraI	TTTAAA	1 cut(s)	909
EaeI	YGGCCR	1 cut(s)	601
Eam1104I	CTCTTC	3 cut(s)	2, 29, 280
EarI	CTCTTC	3 cut(s)	2, 29, 280
Eco130I	CCWWGG	1 cut(s)	883
Eco47I	GGWCC	2 cut(s)	929, 1109
Eco57I	CTGAAG	2 cut(s)	26, 1234
Eco81I	CCTNAGG	1 cut(s)	705
Eco88I	CYCGRG	2 cut(s)	76, 1070
EcoO109I	RGGNCCY	1 cut(s)	1109
EcoRII	CCWGG	3 cut(s)	1075, 1111, 1198
EcoT14I	CCWWGG	1 cut(s)	883
ErhI	CCWWGG	1 cut(s)	883
FaeI	CATG	6 cut(s)	233, 457, 896, 1015, 1160, 1219
FalI	AAGNNNNNCTT	2 cut(s)	254, 286
FatI	CATG	6 cut(s)	229, 453, 892, 1011, 1156, 1215
FauI	CCCGC	1 cut(s)	218
FblI	GTMKAC	1 cut(s)	157
FspBI	CTAG	2 cut(s)	135, 173
GlaI	GCGC	1 cut(s)	317
GsuI	CTGGAG	1 cut(s)	1107
HaeII	RGCGCY	1 cut(s)	319
HaeIII	GGCC	3 cut(s)	603, 765, 882
HapII	CCGG	1 cut(s)	234
HhaI	GCGC	1 cut(s)	318
Hin1II	CATG	6 cut(s)	233, 457, 896, 1015, 1160, 1219
Hin6I	GCGC	1 cut(s)	316
HinP1I	GCGC	1 cut(s)	316
HincII	GTYRAC	2 cut(s)	158, 1177
HindII	GTYRAC	2 cut(s)	158, 1177
HindIII	AAGCTT	2 cut(s)	970, 1100
HpaII	CCGG	1 cut(s)	234
HphI	GGTGA	4 cut(s)	112, 489, 560, 1188
Hpy166II	GTNNAC	4 cut(s)	158, 344, 718, 1177
Hpy188I	TCNGA	4 cut(s)	370, 448, 933, 1253
Hpy188III	TCNNGA	3 cut(s)	76, 653, 976
Hpy8I	GTNNAC	4 cut(s)	158, 344, 718, 1177
HpyAV	CCTTC	2 cut(s)	199, 638
HpyCH4III	ACNGT	3 cut(s)	592, 878, 1119
HpyCH4V	TGCA	6 cut(s)	385, 663, 682, 776, 892, 1085
HpyF10VI	GCNNNNNNNGC	2 cut(s)	315, 797
HpyF3I	CTNAG	8 cut(s)	166, 252, 312, 369, 555, 705, 750, 1029
Hsp92II	CATG	6 cut(s)	233, 457, 896, 1015, 1160, 1219
HspAI	GCGC	1 cut(s)	316
KroI	GCCGGC	1 cut(s)	233
KroNI	GCCGGC	1 cut(s)	235
Kzo9I	GATC	1 cut(s)	362
LmnI	GCTCC	2 cut(s)	107, 187
LweI	GCATC	3 cut(s)	246, 467, 522
MabI	ACCWGGT	1 cut(s)	1198
MaeI	CTAG	2 cut(s)	135, 173
MaeIII	GTNAC	3 cut(s)	895, 1007, 1194
MalI	GATC	1 cut(s)	364
MboI	GATC	1 cut(s)	362
MboII	GAAGA	6 cut(s)	19, 46, 297, 357, 565, 1240
MfeI	CAATTG	1 cut(s)	620
MflI	RGATCY	1 cut(s)	362
MhlI	GDGCHC	2 cut(s)	739, 1233
MlsI	TGGCCA	1 cut(s)	603
MluCI	AATT	8 cut(s)	52, 321, 336, 470, 559, 620, 954, 1244
MluNI	TGGCCA	1 cut(s)	603
MlyI	GAGTC	4 cut(s)	55, 170, 1015, 1202
MnlI	CCTC	9 cut(s)	146, 258, 275, 336, 433, 776, 865, 1079, 1141
Mox20I	TGGCCA	1 cut(s)	603
MroNI	GCCGGC	1 cut(s)	233
MscI	TGGCCA	1 cut(s)	603
MseI	TTAA	7 cut(s)	149, 392, 408, 473, 908, 1205, 1258
Msp20I	TGGCCA	1 cut(s)	603
MspI	CCGG	1 cut(s)	234
MspR9I	CCNGG	3 cut(s)	1077, 1113, 1200
MunI	CAATTG	1 cut(s)	620
MvaI	CCWGG	3 cut(s)	1077, 1113, 1200
MwoI	GCNNNNNNNGC	2 cut(s)	315, 797
NaeI	GCCGGC	1 cut(s)	235
NdeII	GATC	1 cut(s)	362
NgoMIV	GCCGGC	1 cut(s)	233
NlaIII	CATG	6 cut(s)	233, 457, 896, 1015, 1160, 1219
NlaIV	GGNNCC	1 cut(s)	445
NmeAIII	GCCGAG	1 cut(s)	1252
NmuCI	GTSAC	2 cut(s)	1007, 1194
NspI	RCATGY	1 cut(s)	896
PaeR7I	CTCGAG	1 cut(s)	1070
PdiI	GCCGGC	1 cut(s)	235
PfeI	GAWTC	6 cut(s)	72, 373, 834, 1051, 1064, 1188
PflMI	CCANNNNNTGG	1 cut(s)	506
PfoI	TCCNGGA	1 cut(s)	1111
PleI	GAGTC	4 cut(s)	54, 170, 1014, 1201
PpsI	GAGTC	4 cut(s)	54, 170, 1014, 1201
PpuMI	RGGWCCY	1 cut(s)	1109
Psp5II	RGGWCCY	1 cut(s)	1109
Psp6I	CCWGG	3 cut(s)	1075, 1111, 1198
PspGI	CCWGG	3 cut(s)	1075, 1111, 1198
PspN4I	GGNNCC	1 cut(s)	445
PspPI	GGNCC	2 cut(s)	929, 1109
PspPPI	RGGWCCY	1 cut(s)	1109
PspXI	VCTCGAGB	1 cut(s)	1070
PstNI	CAGNNNCTG	2 cut(s)	506, 1112
PsuI	RGATCY	1 cut(s)	362
RsaI	GTAC	4 cut(s)	299, 696, 1003, 1043
RsaNI	GTAC	4 cut(s)	298, 695, 1002, 1042
SalI	GTCGAC	1 cut(s)	156
SaqAI	TTAA	7 cut(s)	149, 392, 408, 473, 908, 1205, 1258
Sau3AI	GATC	1 cut(s)	362
Sau96I	GGNCC	2 cut(s)	929, 1109
ScaI	AGTACT	2 cut(s)	696, 1043
SchI	GAGTC	4 cut(s)	55, 170, 1015, 1202
ScrFI	CCNGG	3 cut(s)	1077, 1113, 1200
SduI	GDGCHC	2 cut(s)	739, 1233
SexAI	ACCWGGT	1 cut(s)	1198
SfaNI	GCATC	3 cut(s)	246, 467, 522
Sfr274I	CTCGAG	1 cut(s)	1070
SinI	GGWCC	2 cut(s)	929, 1109
SlaI	CTCGAG	1 cut(s)	1070
SmiI	ATTTAAAT	1 cut(s)	909
SmlI	CTYRAG	3 cut(s)	260, 730, 1070
SmoI	CTYRAG	3 cut(s)	260, 730, 1070
Sse9I	AATT	8 cut(s)	52, 321, 336, 470, 559, 620, 954, 1244
SsiI	CCGC	1 cut(s)	211
SspI	AATATT	1 cut(s)	305
SspMI	CTAG	2 cut(s)	135, 173
StyD4I	CCNGG	3 cut(s)	1075, 1111, 1198
StyI	CCWWGG	1 cut(s)	883
SwaI	ATTTAAAT	1 cut(s)	909
TaaI	ACNGT	3 cut(s)	592, 878, 1119
TaqI	TCGA	5 cut(s)	157, 420, 516, 1071, 1191
TaqII	GACCGA	1 cut(s)	1111
TasI	AATT	8 cut(s)	52, 321, 336, 470, 559, 620, 954, 1244
TatI	WGTACW	3 cut(s)	297, 694, 1041
TfiI	GAWTC	6 cut(s)	72, 373, 834, 1051, 1064, 1188
Tru1I	TTAA	7 cut(s)	149, 392, 408, 473, 908, 1205, 1258
Tru9I	TTAA	7 cut(s)	149, 392, 408, 473, 908, 1205, 1258
TscAI	CASTG	4 cut(s)	73, 135, 202, 793
TseFI	GTSAC	2 cut(s)	1007, 1194
Tsp45I	GTSAC	2 cut(s)	1007, 1194
TspDTI	ATGAA	4 cut(s)	620, 1028, 1077, 1145
TspGWI	ACGGA	1 cut(s)	985
TspRI	CASTG	4 cut(s)	73, 135, 202, 793
Van91I	CCANNNNNTGG	1 cut(s)	506
VpaK11BI	GGWCC	2 cut(s)	929, 1109
XapI	RAATTY	2 cut(s)	321, 1244
XceI	RCATGY	1 cut(s)	896
XhoI	CTCGAG	1 cut(s)	1070
XmiI	GTMKAC	1 cut(s)	157
XspI	CTAG	2 cut(s)	135, 173
ZrmI	AGTACT	2 cut(s)	696, 1043

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.