Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0000971

Physical Location & Seq

Genomic Coordinates Reverse (-)

42035332 .. 42039464

Gene Structure 4133 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG350400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGCTGAAAACAACACTCAAGAGATTGGAGAGGAACTCGGTTTTGAAGAGTGTGTGGAGTCGTAATTATTGTATGAGCAGTGGAATCCCGAGAGAGAGAGTAGAGTGCGTGGTGATAGGAGCAGGTGTAGTGGGATTATCAGTGGCCAGAGAGCTTGCTTTAAGAGGTCGACAGGTCTTAGTCCTAGACTCTGCTCCCACCTTCGGCACTGCCACCAGTTCCCGCAACAGCGAAGTTATCCATGCCGGCATCTACTACCCTCCTAAGTCTCTCAAGGCAATCTTTTGTGTAAGAGGAAGAGACTTGCTGTACAAATATTGCTCTCAGCGCCAAATTCCTCACAAACAAATTGGTAAACTCATTGTTGCCACTGGATCGTCTGAGATTCAAAAGTTGCATAATTTACTGGATCGTGGGATAAAAAATGGGGTCGATGGTCTGGTGATGATGGAGGGTTCCGAAGCCATGAGAATGGAACCCGAATTAAGATGCTTGAAAGCCTTACTATCACCAGTTTCTGGGATTGTCGATACACATTCTTTGATGCTGTCTTTGGTGGGTGAAGCTGAGAATTGTGGCACAATCTTCTGCTATAACACTACTGTTATTGGTGGCCACATAGAACAAAATCAATTGTGCCTTCATATTTCTCAAACCAAACATCTTGAAATGTGCAATGGAAATTCTCCCCTGCAACCAGAGATAGTACTCATTCCTAAGTTTGTAGTGAACTCCGCTGGCTTGAGTGCCCTTGCCCTTGCTAAGCGATTTGATGGCCTCCAAAGTGCAGTTATTCCCACTGCTCATTATGCTCGTGGGTGCTACTTCACTCTATCCAATACTGGAATCTGTCCTTTCAAACATTTGATATATCCTATACCAGAGGACGGTGGCCTTGGAGTGCATGTTACTTTGGATTTAAATGGTCAGGTCAAGTTTGGTCCGAATGTGGATTGGATTGATGGAATTGATGACATTTCAAGCTTCCTGAATAAGTTTGACTATTCCGTATGTACGAGTCACATGAAGCATTTTTACCCTGAGATAAAGAAGTACTACCCGAATCTAACAGATGAATCCCTCGAGCCAGGTTATGCAGGGATTAGACCGAAGCTTTCAGGTCCTGGACAGTCTCCAGTTGATTTTGTGATACAGGGAGAGGATATTCATGGGATAACTGGTCTTGTCAACCTTTTTGGAATCGAGTCACCTGGTTTAACTTCAAGCATGGCGATTGCCGAGCACATAGCCACCAAATTCTTCAGATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003973 GO:0005488 GO:0008150 GO:0008152 GO:0016491 GO:0016614 GO:0016899 GO:0036094 GO:0043167 GO:0043168 GO:0047545 GO:0048037 GO:0050660 GO:0050662 GO:0055114 GO:0071949 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DAO

Protein Analysis

423

Amino Acids

46.31

Weight (kDa)

8.16

Isoelectric Point (pI)

42.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAO	PF01266	36 - 417	5.8e-52	FAD dependent oxidoreductase
NAD_binding_8	PF13450	38 - 76	1.1e-06	NAD(P)-binding Rossmann-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000971)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56840
fragaria_vesca	FvH4_1g29380 FvH4_1g29380 FvH4_1g29380 FvH4_1g29380 FvH4_1g29380 FvH4_1g29380 FvH4_1g29380 FvH4_1g29380
malus_domestica	MD14G1091600.v1.1 MD14G1100100.v1.1
prunus_persica	Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1
pyrus_communis	pycom14g09020
rosa_chinensis	RchiOBHm_Chr3g0495031
rosa_laevigata	RLG00000022654
rosa_multiflora	Rmu_ssc0000058.1_g000010
rosa_roxburghii	Rroxscaffold_6G00390830
rosa_rugosa	Rorug03G0269400
rosa_samantha	Rh3AG318400 Rh3BG353500 Rh3CG350400 Rh3DG352800
rosa_wichuraiana	Rw0G014470 Rw0G015070 Rw3G027760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	113
Acc36I	ACCTGC	1 cut(s)	113
AccB7I	CCANNNNNTGG	1 cut(s)	518
AccI	GTMKAC	1 cut(s)	169
AciI	CCGC	2 cut(s)	223, 735
AclWI	GGATC	2 cut(s)	382, 417
AcoI	YGGCCR	2 cut(s)	144, 613
AcsI	RAATTY	3 cut(s)	333, 682, 1256
AcuI	CTGAAG	1 cut(s)	1246
AfaI	GTAC	4 cut(s)	311, 708, 1015, 1055
AfiI	CCNNNNNNNGG	3 cut(s)	203, 518, 887
AgsI	TTSAA	7 cut(s)	46, 389, 496, 668, 859, 981, 1224
AjnI	CCWGG	3 cut(s)	1087, 1123, 1210
AluBI	AGCT	4 cut(s)	154, 566, 984, 1114
AluI	AGCT	4 cut(s)	154, 566, 984, 1114
Alw21I	GWGCWC	1 cut(s)	1245
Alw26I	GTCTC	3 cut(s)	273, 294, 1137
AlwI	GGATC	2 cut(s)	382, 417
AlwNI	CAGNNNCTG	2 cut(s)	518, 1124
Ama87I	CYCGRG	2 cut(s)	88, 1082
AoxI	GGCC	4 cut(s)	144, 613, 775, 892
ApoI	RAATTY	3 cut(s)	333, 682, 1256
AspLEI	GCGC	1 cut(s)	330
AspS9I	GGNCC	2 cut(s)	941, 1121
AsuHPI	GGTGA	5 cut(s)	124, 454, 501, 572, 1200
AvaI	CYCGRG	2 cut(s)	88, 1082
AvaII	GGWCC	2 cut(s)	941, 1121
BaeGI	GKGCMC	1 cut(s)	751
BalI	TGGCCA	2 cut(s)	146, 615
BarI	GAAGNNNNNNTAC	2 cut(s)	1019, 1051
BauI	CACGAG	1 cut(s)	813
Bbv12I	GWGCWC	1 cut(s)	1245
BccI	CCATC	4 cut(s)	428, 442, 767, 956
BciT130I	CCWGG	3 cut(s)	1089, 1125, 1212
BcoDI	GTCTC	3 cut(s)	273, 294, 1137
BfaI	CTAG	1 cut(s)	185
BfoI	RGCGCY	1 cut(s)	331
BfuAI	ACCTGC	1 cut(s)	113
BlpI	GCTNAGC	1 cut(s)	762
BmcAI	AGTACT	2 cut(s)	708, 1055
Bme1390I	CCNGG	3 cut(s)	1089, 1125, 1212
Bme18I	GGWCC	2 cut(s)	941, 1121
BmeT110I	CYCGRG	2 cut(s)	88, 1082
BmgT120I	GGNCC	2 cut(s)	941, 1121
BmiI	GGNNCC	2 cut(s)	457, 477
BmrFI	CCNGG	3 cut(s)	1089, 1125, 1212
BmsI	GCATC	3 cut(s)	258, 479, 534
BplI	GAGNNNNNCTC	2 cut(s)	20, 52
BpmI	CTGGAG	1 cut(s)	1119
Bpu1102I	GCTNAGC	1 cut(s)	762
BpuEI	CTTGAG	2 cut(s)	257, 763
BsaJI	CCNNGG	1 cut(s)	895
BsaXI	ACNNNNNCTCC	4 cut(s)	111, 141, 891, 921
Bsc4I	CCNNNNNNNGG	3 cut(s)	203, 518, 887
Bse118I	RCCGGY	1 cut(s)	245
Bse1I	ACTGG	7 cut(s)	216, 376, 411, 512, 847, 1136, 1183
Bse3DI	GCAATG	1 cut(s)	682
BseBI	CCWGG	3 cut(s)	1089, 1125, 1212
BseDI	CCNNGG	1 cut(s)	895
BseLI	CCNNNNNNNGG	3 cut(s)	203, 518, 887
BseMI	GCAATG	1 cut(s)	682
BseMII	CTCAG	4 cut(s)	338, 372, 558, 1032
BseNI	ACTGG	7 cut(s)	216, 376, 411, 512, 847, 1136, 1183
BseSI	GKGCMC	1 cut(s)	751
BsgI	GTGCAG	1 cut(s)	807
BshFI	GGCC	4 cut(s)	146, 615, 777, 894
BsiHKAI	GWGCWC	1 cut(s)	1245
BsiHKCI	CYCGRG	2 cut(s)	88, 1082
BsiSI	CCGG	1 cut(s)	246
BslI	CCNNNNNNNGG	3 cut(s)	203, 518, 887
BsmAI	GTCTC	3 cut(s)	273, 294, 1137
BsnI	GGCC	4 cut(s)	146, 615, 777, 894
BsoBI	CYCGRG	2 cut(s)	88, 1082
Bsp1286I	GDGCHC	2 cut(s)	751, 1245
Bsp1407I	TGTACA	1 cut(s)	309
Bsp143I	GATC	2 cut(s)	374, 409
Bsp1720I	GCTNAGC	1 cut(s)	762
BspACI	CCGC	2 cut(s)	223, 735
BspANI	GGCC	4 cut(s)	146, 615, 777, 894
BspCNI	CTCAG	4 cut(s)	337, 373, 559, 1033
BspLI	GGNNCC	2 cut(s)	457, 477
BspMI	ACCTGC	1 cut(s)	113
BspPI	GGATC	2 cut(s)	382, 417
BsrDI	GCAATG	1 cut(s)	682
BsrFI	RCCGGY	1 cut(s)	245
BsrGI	TGTACA	1 cut(s)	309
BsrI	ACTGG	7 cut(s)	216, 376, 411, 512, 847, 1136, 1183
BssAI	RCCGGY	1 cut(s)	245
BssECI	CCNNGG	1 cut(s)	895
BssMI	GATC	2 cut(s)	374, 409
BssSI	CACGAG	1 cut(s)	813
BssT1I	CCWWGG	1 cut(s)	895
Bst2BI	CACGAG	1 cut(s)	813
Bst2UI	CCWGG	3 cut(s)	1089, 1125, 1212
Bst4CI	ACNGT	3 cut(s)	604, 890, 1131
Bst6I	CTCTTC	2 cut(s)	41, 292
BstAUI	TGTACA	1 cut(s)	309
BstC8I	GCNNGC	3 cut(s)	156, 247, 739
BstDEI	CTNAG	8 cut(s)	178, 264, 324, 381, 567, 717, 762, 1041
BstH2I	RGCGCY	1 cut(s)	331
BstHHI	GCGC	1 cut(s)	330
BstKTI	GATC	2 cut(s)	377, 412
BstMAI	GTCTC	3 cut(s)	273, 294, 1137
BstMBI	GATC	2 cut(s)	374, 409
BstMWI	GCNNNNNNNGC	2 cut(s)	327, 809
BstNI	CCWGG	3 cut(s)	1089, 1125, 1212
BstNSI	RCATGY	1 cut(s)	908
BstSCI	CCNGG	3 cut(s)	1087, 1123, 1210
BstSLI	GKGCMC	1 cut(s)	751
BstXI	CCANNNNNNTGG	1 cut(s)	472
BsuRI	GGCC	4 cut(s)	146, 615, 777, 894
BtsI	GCAGTG	3 cut(s)	85, 207, 798
BtsIMutI	CAGTG	5 cut(s)	85, 147, 207, 369, 798
BveI	ACCTGC	1 cut(s)	113
Cac8I	GCNNGC	3 cut(s)	156, 247, 739
CaiI	CAGNNNCTG	2 cut(s)	518, 1124
CfoI	GCGC	1 cut(s)	330
Cfr10I	RCCGGY	1 cut(s)	245
Cfr13I	GGNCC	2 cut(s)	941, 1121
CsiI	ACCWGGT	1 cut(s)	1210
Csp6I	GTAC	4 cut(s)	310, 707, 1014, 1054
CviAII	CATG	6 cut(s)	242, 466, 905, 1024, 1169, 1228
CviQI	GTAC	4 cut(s)	310, 707, 1014, 1054
DdeI	CTNAG	8 cut(s)	178, 264, 324, 381, 567, 717, 762, 1041
DpnI	GATC	2 cut(s)	376, 411
DpnII	GATC	2 cut(s)	374, 409
DraI	TTTAAA	1 cut(s)	921
EaeI	YGGCCR	2 cut(s)	144, 613
Eam1104I	CTCTTC	2 cut(s)	41, 292
EarI	CTCTTC	2 cut(s)	41, 292
Eco130I	CCWWGG	1 cut(s)	895
Eco47I	GGWCC	2 cut(s)	941, 1121
Eco57I	CTGAAG	1 cut(s)	1246
Eco88I	CYCGRG	2 cut(s)	88, 1082
EcoO109I	RGGNCCY	1 cut(s)	1121
EcoRII	CCWGG	3 cut(s)	1087, 1123, 1210
EcoT14I	CCWWGG	1 cut(s)	895
ErhI	CCWWGG	1 cut(s)	895
FaeI	CATG	6 cut(s)	245, 469, 908, 1027, 1172, 1231
FalI	AAGNNNNNCTT	2 cut(s)	266, 298
FatI	CATG	6 cut(s)	241, 465, 904, 1023, 1168, 1227
FauI	CCCGC	1 cut(s)	230
FblI	GTMKAC	1 cut(s)	169
FspBI	CTAG	1 cut(s)	185
GlaI	GCGC	1 cut(s)	329
GsuI	CTGGAG	1 cut(s)	1119
HaeII	RGCGCY	1 cut(s)	331
HaeIII	GGCC	4 cut(s)	146, 615, 777, 894
HapII	CCGG	1 cut(s)	246
HhaI	GCGC	1 cut(s)	330
Hin1II	CATG	6 cut(s)	245, 469, 908, 1027, 1172, 1231
Hin6I	GCGC	1 cut(s)	328
HinP1I	GCGC	1 cut(s)	328
HincII	GTYRAC	2 cut(s)	170, 1189
HindII	GTYRAC	2 cut(s)	170, 1189
HindIII	AAGCTT	2 cut(s)	982, 1112
HpaII	CCGG	1 cut(s)	246
HphI	GGTGA	5 cut(s)	124, 454, 501, 572, 1200
Hpy166II	GTNNAC	4 cut(s)	170, 356, 730, 1189
Hpy188I	TCNGA	4 cut(s)	382, 460, 945, 1265
Hpy188III	TCNNGA	4 cut(s)	19, 88, 665, 988
Hpy8I	GTNNAC	4 cut(s)	170, 356, 730, 1189
HpyAV	CCTTC	2 cut(s)	211, 650
HpyCH4III	ACNGT	3 cut(s)	604, 890, 1131
HpyCH4V	TGCA	6 cut(s)	397, 675, 694, 788, 904, 1097
HpyF10VI	GCNNNNNNNGC	2 cut(s)	327, 809
HpyF3I	CTNAG	8 cut(s)	178, 264, 324, 381, 567, 717, 762, 1041
Hsp92II	CATG	6 cut(s)	245, 469, 908, 1027, 1172, 1231
HspAI	GCGC	1 cut(s)	328
KroI	GCCGGC	1 cut(s)	245
KroNI	GCCGGC	1 cut(s)	247
Kzo9I	GATC	2 cut(s)	374, 409
LmnI	GCTCC	2 cut(s)	119, 199
LweI	GCATC	3 cut(s)	258, 479, 534
MabI	ACCWGGT	1 cut(s)	1210
MaeI	CTAG	1 cut(s)	185
MaeIII	GTNAC	3 cut(s)	907, 1019, 1206
MalI	GATC	2 cut(s)	376, 411
MboI	GATC	2 cut(s)	374, 409
MboII	GAAGA	4 cut(s)	58, 309, 577, 1252
MfeI	CAATTG	1 cut(s)	632
MhlI	GDGCHC	2 cut(s)	751, 1245
MlsI	TGGCCA	2 cut(s)	146, 615
MluNI	TGGCCA	2 cut(s)	146, 615
MlyI	GAGTC	4 cut(s)	67, 182, 1027, 1214
Mox20I	TGGCCA	2 cut(s)	146, 615
MroNI	GCCGGC	1 cut(s)	245
MscI	TGGCCA	2 cut(s)	146, 615
MseI	TTAA	5 cut(s)	161, 485, 920, 1217, 1270
MslI	CAYNNNNRTG	1 cut(s)	470
Msp20I	TGGCCA	2 cut(s)	146, 615
MspA1I	CMGCKG	1 cut(s)	737
MspI	CCGG	1 cut(s)	246
MspR9I	CCNGG	3 cut(s)	1089, 1125, 1212
MunI	CAATTG	1 cut(s)	632
MvaI	CCWGG	3 cut(s)	1089, 1125, 1212
MwoI	GCNNNNNNNGC	2 cut(s)	327, 809
NaeI	GCCGGC	1 cut(s)	247
NdeII	GATC	2 cut(s)	374, 409
NgoMIV	GCCGGC	1 cut(s)	245
NlaIII	CATG	6 cut(s)	245, 469, 908, 1027, 1172, 1231
NlaIV	GGNNCC	2 cut(s)	457, 477
NmeAIII	GCCGAG	1 cut(s)	1264
NmuCI	GTSAC	2 cut(s)	1019, 1206
NspI	RCATGY	1 cut(s)	908
PaeR7I	CTCGAG	1 cut(s)	1082
PaqCI	CACCTGC	1 cut(s)	113
PdiI	GCCGGC	1 cut(s)	247
PfeI	GAWTC	6 cut(s)	84, 385, 846, 1063, 1076, 1200
PflMI	CCANNNNNTGG	1 cut(s)	518
PfoI	TCCNGGA	1 cut(s)	1123
PleI	GAGTC	4 cut(s)	66, 182, 1026, 1213
PpsI	GAGTC	4 cut(s)	66, 182, 1026, 1213
PpuMI	RGGWCCY	1 cut(s)	1121
Psp5II	RGGWCCY	1 cut(s)	1121
Psp6I	CCWGG	3 cut(s)	1087, 1123, 1210
PspGI	CCWGG	3 cut(s)	1087, 1123, 1210
PspN4I	GGNNCC	2 cut(s)	457, 477
PspPI	GGNCC	2 cut(s)	941, 1121
PspPPI	RGGWCCY	1 cut(s)	1121
PspXI	VCTCGAGB	1 cut(s)	1082
PstNI	CAGNNNCTG	2 cut(s)	518, 1124
RsaI	GTAC	4 cut(s)	311, 708, 1015, 1055
RsaNI	GTAC	4 cut(s)	310, 707, 1014, 1054
RseI	CAYNNNNRTG	1 cut(s)	470
SalI	GTCGAC	1 cut(s)	168
SaqAI	TTAA	5 cut(s)	161, 485, 920, 1217, 1270
Sau3AI	GATC	2 cut(s)	374, 409
Sau96I	GGNCC	2 cut(s)	941, 1121
ScaI	AGTACT	2 cut(s)	708, 1055
SchI	GAGTC	4 cut(s)	67, 182, 1027, 1214
ScrFI	CCNGG	3 cut(s)	1089, 1125, 1212
SduI	GDGCHC	2 cut(s)	751, 1245
SexAI	ACCWGGT	1 cut(s)	1210
SfaNI	GCATC	3 cut(s)	258, 479, 534
Sfr274I	CTCGAG	1 cut(s)	1082
SinI	GGWCC	2 cut(s)	941, 1121
SlaI	CTCGAG	1 cut(s)	1082
SmiI	ATTTAAAT	1 cut(s)	921
SmiMI	CAYNNNNRTG	1 cut(s)	470
SmlI	CTYRAG	4 cut(s)	17, 272, 742, 1082
SmoI	CTYRAG	4 cut(s)	17, 272, 742, 1082
SsiI	CCGC	2 cut(s)	223, 735
SspI	AATATT	1 cut(s)	317
SspMI	CTAG	1 cut(s)	185
StyD4I	CCNGG	3 cut(s)	1087, 1123, 1210
StyI	CCWWGG	1 cut(s)	895
SwaI	ATTTAAAT	1 cut(s)	921
TaaI	ACNGT	3 cut(s)	604, 890, 1131
TaqI	TCGA	5 cut(s)	169, 432, 528, 1083, 1203
TaqII	GACCGA	1 cut(s)	1123
TatI	WGTACW	3 cut(s)	309, 706, 1053
TfiI	GAWTC	6 cut(s)	84, 385, 846, 1063, 1076, 1200
Tru1I	TTAA	5 cut(s)	161, 485, 920, 1217, 1270
Tru9I	TTAA	5 cut(s)	161, 485, 920, 1217, 1270
TscAI	CASTG	5 cut(s)	85, 147, 214, 376, 805
TseFI	GTSAC	2 cut(s)	1019, 1206
Tsp45I	GTSAC	2 cut(s)	1019, 1206
TspDTI	ATGAA	4 cut(s)	632, 1040, 1089, 1157
TspGWI	ACGGA	1 cut(s)	997
TspRI	CASTG	5 cut(s)	85, 147, 214, 376, 805
Van91I	CCANNNNNTGG	1 cut(s)	518
VpaK11BI	GGWCC	2 cut(s)	941, 1121
XapI	RAATTY	3 cut(s)	333, 682, 1256
XceI	RCATGY	1 cut(s)	908
XhoI	CTCGAG	1 cut(s)	1082
XmiI	GTMKAC	1 cut(s)	169
XspI	CTAG	1 cut(s)	185
ZrmI	AGTACT	2 cut(s)	708, 1055

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.