Rroxscaffold_6G00390830

L-2-hydroxyglutarate dehydrogenase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Forward (+)
6634918 .. 6646746
11829 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00390830.1

Sequence Viewer

Length: 1284 bp
ATGCTGAAAACAACACTCAAGAGATTGGAGACGAACTTGTCATGGTCGGTTTTGAAGAGTGTGTGGTGGAGTCGTAATTATTGTATGAGCGGTGGAATCCCGAGAGAGAGAGTAGAGTGCGTGGTGATAGGAGCAGGTGTAGTGGGATTATCAGTGGCTAGAGAGCTTGCTTTAAGAGGTCGACAGGTCTTAGTCTTAGACTCTGCTCCCACCTTCGGCACTGCCACCAGTTCCCGCAACAGCGAAGTTATCCATGCCGGCATCTACTACCCTCCTAATTCTCTCAAGGCAATCTTTTGTGTAAGAGGAAGAGACTTGCTGTACAAATATTGCTCTCAGCGCCAAATTCCTCACAAACAAATTGGTAAACTCATTGTTGCCACGGGATCTTCTGAGATTCAAAAGTTGCATTATTTAATGGATTGTGGGATTAAAAATGGGGTCGATGGTCTGGTAATGATGGAGGGTTCCGAAGCCATGAGAATAGAACCCGAATTAAGATGCTTGAAAGCCTTACTATCACCAGTTTCTGGGATTGTCGATACACATTCTTTGATGCTGTCTTTGGTGGGTGAAGCTGAGAATTGTGGCACAATCTTCTGCTATAACACTACTGTTATTGGTGGCCACATAGAACAAAATCAATTGTGCCTTCATATTTCTCAAACCAAACATCTTGAAATGTGCAATGGAAATTCTCCCCTGCAACCAGAGATAGTACTCATTCCTAAGTTTGTAGTGAACTCTGCTGGCTTGAGTGCCCCTGCCCTTGCTAAGCGATTTGATGGCCTCCAAATTGCAGTTATTCCCACTGCTCGTTATGCTCGTGGGTGCTACTTCACTCTATCCAATACTGGAATCTGTCCTTTCAAACATTTGATATATCCTATACCAGAGGACGGTGGCCTTGGAGTGCATGTTACTTTGGATTTAAATGGTCAGGTCAAGTTTGGTCCGAATGTGGAATGGATTGATGGAGTTGATGACATTTCAAGCTTCCTGAATAAGTTTGACTATTCCGTATGTAAGAGTCACATGAAGCATTTTTACCCTGAGATAAAGAAGTACTACCCGAATCTAAAAGATGAATCCCTCGAGCCGGGTTATGCAGGGATTAGACCGAAGCTTTCAGGTCCTAGACAGTCTCCAGTTGATTTTGTGATACAGGGAGAGGATATTCATGGGATAACTGGTCTTGTCAACCTTTTTGGAATCGAGTCACCTGGTTTAACTTCAAGCATGGCGATTGCCGAGCACATAGCCACCAAATTCTTCAGATGTTAA

Protein Analysis

427

Amino Acids

46.96

Weight (kDa)

8.31

Isoelectric Point (pI)

40.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DAO PF01266 40 - 421 1.1e-51 FAD dependent oxidoreductase
NAD_binding_8 PF13450 42 - 80 9.5e-07 NAD(P)-binding Rossmann-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 125
AasI GACNNNNNNGTC 1 cut(s) 37
Acc36I ACCTGC 1 cut(s) 125
AccB7I CCANNNNNTGG 1 cut(s) 530
AccBSI CCGCTC 1 cut(s) 90
AccI GTMKAC 1 cut(s) 181
AciI CCGC 2 cut(s) 90, 235
AclWI GGATC 1 cut(s) 394
AcoI YGGCCR 1 cut(s) 625
AcsI RAATTY 3 cut(s) 345, 694, 1268
AcuI CTGAAG 1 cut(s) 1258
AfaI GTAC 3 cut(s) 323, 720, 1067
AfiI CCNNNNNNNGG 4 cut(s) 215, 530, 899, 1099
AgsI TTSAA 7 cut(s) 55, 401, 508, 680, 871, 993, 1236
AjnI CCWGG 1 cut(s) 1222
AluBI AGCT 4 cut(s) 166, 578, 996, 1126
AluI AGCT 4 cut(s) 166, 578, 996, 1126
Alw21I GWGCWC 1 cut(s) 1257
Alw26I GTCTC 3 cut(s) 23, 306, 1149
AlwI GGATC 1 cut(s) 394
AlwNI CAGNNNCTG 1 cut(s) 530
Ama87I CYCGRG 2 cut(s) 100, 1094
AoxI GGCC 3 cut(s) 625, 787, 904
ApoI RAATTY 3 cut(s) 345, 694, 1268
AspLEI GCGC 1 cut(s) 342
AspS9I GGNCC 2 cut(s) 953, 1133
AsuC2I CCSGG 1 cut(s) 1101
AsuHPI GGTGA 4 cut(s) 136, 513, 584, 1212
AvaI CYCGRG 2 cut(s) 100, 1094
AvaII GGWCC 2 cut(s) 953, 1133
BaeGI GKGCMC 1 cut(s) 763
BalI TGGCCA 1 cut(s) 627
BarI GAAGNNNNNNTAC 2 cut(s) 1031, 1063
BauI CACGAG 1 cut(s) 825
Bbv12I GWGCWC 1 cut(s) 1257
BccI CCATC 4 cut(s) 440, 454, 779, 968
BciT130I CCWGG 1 cut(s) 1224
BcnI CCSGG 1 cut(s) 1101
BcoDI GTCTC 3 cut(s) 23, 306, 1149
BfaI CTAG 2 cut(s) 159, 1137
BfoI RGCGCY 1 cut(s) 343
BfuAI ACCTGC 1 cut(s) 125
BlpI GCTNAGC 1 cut(s) 774
BmcAI AGTACT 2 cut(s) 720, 1067
Bme1390I CCNGG 2 cut(s) 1101, 1224
Bme18I GGWCC 2 cut(s) 953, 1133
BmeT110I CYCGRG 2 cut(s) 100, 1094
BmgT120I GGNCC 2 cut(s) 953, 1133
BmiI GGNNCC 1 cut(s) 469
BmrFI CCNGG 2 cut(s) 1101, 1224
BmsI GCATC 3 cut(s) 270, 491, 546
BpmI CTGGAG 1 cut(s) 1131
Bpu1102I GCTNAGC 1 cut(s) 774
BpuEI CTTGAG 2 cut(s) 269, 775
BpuMI CCSGG 1 cut(s) 1101
BsaJI CCNNGG 2 cut(s) 381, 907
BsaXI ACNNNNNCTCC 4 cut(s) 123, 153, 903, 933
Bsc4I CCNNNNNNNGG 4 cut(s) 215, 530, 899, 1099
Bse118I RCCGGY 1 cut(s) 257
Bse1I ACTGG 5 cut(s) 228, 524, 859, 1148, 1195
Bse3DI GCAATG 1 cut(s) 694
BseBI CCWGG 1 cut(s) 1224
BseDI CCNNGG 2 cut(s) 381, 907
BseLI CCNNNNNNNGG 4 cut(s) 215, 530, 899, 1099
BseMI GCAATG 1 cut(s) 694
BseMII CTCAG 4 cut(s) 350, 384, 570, 1044
BseNI ACTGG 5 cut(s) 228, 524, 859, 1148, 1195
BseSI GKGCMC 1 cut(s) 763
BshFI GGCC 3 cut(s) 627, 789, 906
BsiHKAI GWGCWC 1 cut(s) 1257
BsiHKCI CYCGRG 2 cut(s) 100, 1094
BsiSI CCGG 2 cut(s) 258, 1100
BslI CCNNNNNNNGG 4 cut(s) 215, 530, 899, 1099
BsmAI GTCTC 3 cut(s) 23, 306, 1149
BsmBI CGTCTC 1 cut(s) 23
BsnI GGCC 3 cut(s) 627, 789, 906
BsoBI CYCGRG 2 cut(s) 100, 1094
Bsp1286I GDGCHC 2 cut(s) 763, 1257
Bsp1407I TGTACA 1 cut(s) 321
Bsp143I GATC 1 cut(s) 386
Bsp1720I GCTNAGC 1 cut(s) 774
BspACI CCGC 2 cut(s) 90, 235
BspANI GGCC 3 cut(s) 627, 789, 906
BspCNI CTCAG 4 cut(s) 349, 385, 571, 1045
BspLI GGNNCC 1 cut(s) 469
BspMI ACCTGC 1 cut(s) 125
BspPI GGATC 1 cut(s) 394
BsrBI CCGCTC 1 cut(s) 90
BsrDI GCAATG 1 cut(s) 694
BsrFI RCCGGY 1 cut(s) 257
BsrGI TGTACA 1 cut(s) 321
BsrI ACTGG 5 cut(s) 228, 524, 859, 1148, 1195
BssAI RCCGGY 1 cut(s) 257
BssECI CCNNGG 2 cut(s) 381, 907
BssMI GATC 1 cut(s) 386
BssSI CACGAG 1 cut(s) 825
BssT1I CCWWGG 1 cut(s) 907
Bst2BI CACGAG 1 cut(s) 825
Bst2UI CCWGG 1 cut(s) 1224
Bst4CI ACNGT 3 cut(s) 616, 902, 1143
Bst6I CTCTTC 2 cut(s) 50, 304
BstAUI TGTACA 1 cut(s) 321
BstC8I GCNNGC 3 cut(s) 168, 259, 751
BstDEI CTNAG 8 cut(s) 190, 196, 336, 393, 579, 729, 774, 1053
BstDSI CCRYGG 1 cut(s) 381
BstH2I RGCGCY 1 cut(s) 343
BstHHI GCGC 1 cut(s) 342
BstKTI GATC 1 cut(s) 389
BstMAI GTCTC 3 cut(s) 23, 306, 1149
BstMBI GATC 1 cut(s) 386
BstMWI GCNNNNNNNGC 2 cut(s) 339, 821
BstNI CCWGG 1 cut(s) 1224
BstNSI RCATGY 1 cut(s) 920
BstSCI CCNGG 2 cut(s) 1099, 1222
BstSLI GKGCMC 1 cut(s) 763
BstX2I RGATCY 1 cut(s) 386
BstYI RGATCY 1 cut(s) 386
BsuRI GGCC 3 cut(s) 627, 789, 906
BtgI CCRYGG 1 cut(s) 381
BtsI GCAGTG 2 cut(s) 219, 810
BtsIMutI CAGTG 3 cut(s) 159, 219, 810
BveI ACCTGC 1 cut(s) 125
Cac8I GCNNGC 3 cut(s) 168, 259, 751
CaiI CAGNNNCTG 1 cut(s) 530
CfoI GCGC 1 cut(s) 342
Cfr10I RCCGGY 1 cut(s) 257
Cfr13I GGNCC 2 cut(s) 953, 1133
CsiI ACCWGGT 1 cut(s) 1222
Csp6I GTAC 3 cut(s) 322, 719, 1066
CviAII CATG 7 cut(s) 42, 254, 478, 917, 1036, 1181, 1240
CviQI GTAC 3 cut(s) 322, 719, 1066
DdeI CTNAG 8 cut(s) 190, 196, 336, 393, 579, 729, 774, 1053
DpnI GATC 1 cut(s) 388
DpnII GATC 1 cut(s) 386
DraI TTTAAA 1 cut(s) 933
DrdI GACNNNNNNGTC 1 cut(s) 37
DseDI GACNNNNNNGTC 1 cut(s) 37
EaeI YGGCCR 1 cut(s) 625
Eam1104I CTCTTC 2 cut(s) 50, 304
EarI CTCTTC 2 cut(s) 50, 304
Eco130I CCWWGG 1 cut(s) 907
Eco47I GGWCC 2 cut(s) 953, 1133
Eco57I CTGAAG 1 cut(s) 1258
Eco88I CYCGRG 2 cut(s) 100, 1094
EcoO109I RGGNCCY 1 cut(s) 1133
EcoRII CCWGG 1 cut(s) 1222
EcoT14I CCWWGG 1 cut(s) 907
ErhI CCWWGG 1 cut(s) 907
Esp3I CGTCTC 1 cut(s) 23
FaeI CATG 7 cut(s) 45, 257, 481, 920, 1039, 1184, 1243
FalI AAGNNNNNCTT 2 cut(s) 278, 310
FatI CATG 7 cut(s) 41, 253, 477, 916, 1035, 1180, 1239
FauI CCCGC 1 cut(s) 242
FblI GTMKAC 1 cut(s) 181
FspBI CTAG 2 cut(s) 159, 1137
GlaI GCGC 1 cut(s) 341
GsuI CTGGAG 1 cut(s) 1131
HaeII RGCGCY 1 cut(s) 343
HaeIII GGCC 3 cut(s) 627, 789, 906
HapII CCGG 2 cut(s) 258, 1100
HhaI GCGC 1 cut(s) 342
Hin1II CATG 7 cut(s) 45, 257, 481, 920, 1039, 1184, 1243
Hin6I GCGC 1 cut(s) 340
HinP1I GCGC 1 cut(s) 340
HincII GTYRAC 2 cut(s) 182, 1201
HindII GTYRAC 2 cut(s) 182, 1201
HindIII AAGCTT 2 cut(s) 994, 1124
HpaII CCGG 2 cut(s) 258, 1100
HphI GGTGA 4 cut(s) 136, 513, 584, 1212
Hpy166II GTNNAC 4 cut(s) 182, 368, 742, 1201
Hpy188I TCNGA 4 cut(s) 394, 472, 957, 1277
Hpy188III TCNNGA 4 cut(s) 19, 100, 677, 1000
Hpy8I GTNNAC 4 cut(s) 182, 368, 742, 1201
HpyAV CCTTC 2 cut(s) 223, 662
HpyCH4III ACNGT 3 cut(s) 616, 902, 1143
HpyCH4V TGCA 6 cut(s) 409, 687, 706, 800, 916, 1109
HpyF10VI GCNNNNNNNGC 2 cut(s) 339, 821
HpyF3I CTNAG 8 cut(s) 190, 196, 336, 393, 579, 729, 774, 1053
Hsp92II CATG 7 cut(s) 45, 257, 481, 920, 1039, 1184, 1243
HspAI GCGC 1 cut(s) 340
KroI GCCGGC 1 cut(s) 257
KroNI GCCGGC 1 cut(s) 259
Kzo9I GATC 1 cut(s) 386
LmnI GCTCC 2 cut(s) 131, 211
LweI GCATC 3 cut(s) 270, 491, 546
MabI ACCWGGT 1 cut(s) 1222
MaeI CTAG 2 cut(s) 159, 1137
MaeIII GTNAC 3 cut(s) 919, 1031, 1218
MalI GATC 1 cut(s) 388
MbiI CCGCTC 1 cut(s) 90
MboI GATC 1 cut(s) 386
MboII GAAGA 5 cut(s) 67, 321, 381, 589, 1264
MfeI CAATTG 1 cut(s) 644
MflI RGATCY 1 cut(s) 386
MhlI GDGCHC 2 cut(s) 763, 1257
MlsI TGGCCA 1 cut(s) 627
MluNI TGGCCA 1 cut(s) 627
MlyI GAGTC 4 cut(s) 79, 194, 1039, 1226
MnlI CCTC 9 cut(s) 170, 282, 299, 360, 457, 800, 889, 1103, 1165
Mox20I TGGCCA 1 cut(s) 627
MroNI GCCGGC 1 cut(s) 257
MscI TGGCCA 1 cut(s) 627
MseI TTAA 7 cut(s) 173, 416, 432, 497, 932, 1229, 1282
Msp20I TGGCCA 1 cut(s) 627
MspI CCGG 2 cut(s) 258, 1100
MspR9I CCNGG 2 cut(s) 1101, 1224
MunI CAATTG 1 cut(s) 644
MvaI CCWGG 1 cut(s) 1224
MwoI GCNNNNNNNGC 2 cut(s) 339, 821
NaeI GCCGGC 1 cut(s) 259
NciI CCSGG 1 cut(s) 1101
NdeII GATC 1 cut(s) 386
NgoMIV GCCGGC 1 cut(s) 257
NlaIII CATG 7 cut(s) 45, 257, 481, 920, 1039, 1184, 1243
NlaIV GGNNCC 1 cut(s) 469
NmeAIII GCCGAG 1 cut(s) 1276
NmuCI GTSAC 2 cut(s) 1031, 1218
NspI RCATGY 1 cut(s) 920
PaeR7I CTCGAG 1 cut(s) 1094
PaqCI CACCTGC 1 cut(s) 125
PcsI WCGNNNNNNNCGW 1 cut(s) 823
PdiI GCCGGC 1 cut(s) 259
PfeI GAWTC 6 cut(s) 96, 397, 858, 1075, 1088, 1212
PflMI CCANNNNNTGG 1 cut(s) 530
PleI GAGTC 4 cut(s) 78, 194, 1038, 1225
PpsI GAGTC 4 cut(s) 78, 194, 1038, 1225
PpuMI RGGWCCY 1 cut(s) 1133
Psp5II RGGWCCY 1 cut(s) 1133
Psp6I CCWGG 1 cut(s) 1222
PspGI CCWGG 1 cut(s) 1222
PspN4I GGNNCC 1 cut(s) 469
PspPI GGNCC 2 cut(s) 953, 1133
PspPPI RGGWCCY 1 cut(s) 1133
PspXI VCTCGAGB 1 cut(s) 1094
PstNI CAGNNNCTG 1 cut(s) 530
PsuI RGATCY 1 cut(s) 386
RsaI GTAC 3 cut(s) 323, 720, 1067
RsaNI GTAC 3 cut(s) 322, 719, 1066
SalI GTCGAC 1 cut(s) 180
SaqAI TTAA 7 cut(s) 173, 416, 432, 497, 932, 1229, 1282
Sau3AI GATC 1 cut(s) 386
Sau96I GGNCC 2 cut(s) 953, 1133
ScaI AGTACT 2 cut(s) 720, 1067
SchI GAGTC 4 cut(s) 79, 194, 1039, 1226
ScrFI CCNGG 2 cut(s) 1101, 1224
SduI GDGCHC 2 cut(s) 763, 1257
SexAI ACCWGGT 1 cut(s) 1222
SfaNI GCATC 3 cut(s) 270, 491, 546
Sfr274I CTCGAG 1 cut(s) 1094
SinI GGWCC 2 cut(s) 953, 1133
SlaI CTCGAG 1 cut(s) 1094
SmiI ATTTAAAT 1 cut(s) 933
SmlI CTYRAG 4 cut(s) 17, 284, 754, 1094
SmoI CTYRAG 4 cut(s) 17, 284, 754, 1094
SsiI CCGC 2 cut(s) 90, 235
SspI AATATT 1 cut(s) 329
SspMI CTAG 2 cut(s) 159, 1137
StyD4I CCNGG 2 cut(s) 1099, 1222
StyI CCWWGG 1 cut(s) 907
SwaI ATTTAAAT 1 cut(s) 933
TaaI ACNGT 3 cut(s) 616, 902, 1143
TaqI TCGA 5 cut(s) 181, 444, 540, 1095, 1215
TaqII GACCGA 1 cut(s) 1135
TatI WGTACW 3 cut(s) 321, 718, 1065
TfiI GAWTC 6 cut(s) 96, 397, 858, 1075, 1088, 1212
Tru1I TTAA 7 cut(s) 173, 416, 432, 497, 932, 1229, 1282
Tru9I TTAA 7 cut(s) 173, 416, 432, 497, 932, 1229, 1282
TscAI CASTG 3 cut(s) 159, 226, 817
TseFI GTSAC 2 cut(s) 1031, 1218
Tsp45I GTSAC 2 cut(s) 1031, 1218
TspDTI ATGAA 4 cut(s) 644, 1052, 1101, 1169
TspGWI ACGGA 1 cut(s) 1009
TspRI CASTG 3 cut(s) 159, 226, 817
Van91I CCANNNNNTGG 1 cut(s) 530
VpaK11BI GGWCC 2 cut(s) 953, 1133
XapI RAATTY 3 cut(s) 345, 694, 1268
XceI RCATGY 1 cut(s) 920
XhoI CTCGAG 1 cut(s) 1094
XmiI GTMKAC 1 cut(s) 181
XspI CTAG 2 cut(s) 159, 1137
ZrmI AGTACT 2 cut(s) 720, 1067
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.