Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000971

Physical Location & Seq

Genomic Coordinates Reverse (-)

26515714 .. 26518845

Gene Structure 3132 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0269400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1608 bp

ATGGTGCGCTATCAGCGGTGTCATCAGTGGAAAAAAGGTGAAAAGCATATAGACGAAGATGAAGAGTCTCAGACGTTTCTGATGGAGTTTGCAAACTCTGGTTATTACAAAAGATCAAGCCCCAAGCTTCTCTATCTTCTCTTCATCTCTCTTCTTTCTTGCAGCTTCATATTAGCCCCTCACCTTTTCAGTTCCAGCACCACTTTCTCTCTCTTATATTCAACTCTGATAGAAGATGAAGGGCTTGCTGGTGATATGAATATAAATGCTCCCCTGTGTTCTTCGATCTCTGATGGAGCTATATGTTGTGATCGTAGCAGTATTCGTTCAGATATTTGTATCATGAAAGGGGATGTGAGAACCCAGTCTACTTCCTTTTCGATCTTTGTCTATGGATCTGAAGACAGAAGTAGCTCCAAAAGTCTGTTTTCAGGTATTGTTGAGGAAAATGAGGAACTCCAACACGAAAGGATCAAACCATACACCCGGAAATGGGAAACTAGTGTGATGAACACCATTGATGAATTACACCTCATTGCAAAGAAAGACAGTACTCTAGACCTGTACCAACAACAGTGTGATGTCCAACATGATGTTCCAGCTGTGTTTTTCTCGACTGGGGGCTATACTGGTAATGTTTATCATGAATTCAATGATGGGATTCTGCCATTGTACATTACGTCCCAGCATTTCGACAAAAAGGTTGTGTTTGTCATTCAGGATTATCATAATTGGTGGGTCATGAAATATGGAGACATTCTTTCACAGCTATCAGATTATCCACCTATAGACTTCAGTGGAGATAAGAGAACTCATTGCTTCCCTGAGGCCATTGTTGGTCTGAGAATTCATGACGAGCTTTCTGTTGATTCTTCACTGATGGAGAGGAATAAGGACATTGTTGATTTCCGGGATGTCCTAGACAGAGCTTACTGGCCTCGAATTAGAGGTCTAATTCAAGATGAGGAACGAGAAGCGCAGGAGAAGCTTTCAGTGTCTCCCACATTTGAAAGCTCCTTAGAAATCAAAAAAGAAGTGGAAGAAGATCAACTTTTGAAGAAGCCTAAACTGCTAATCATATCTCGGAATGGATCAAGAGCGATAACTAATGAAAATTTATTGGTGAAGATGGCTGAGAAAATCGGTTTTGAAGTTGAGGTTTTGAGACCAGACCCCACGACAGAGTTAGCAAAGATTTATCGGGCACTTAATGCGAGTGATGTCATGATTGGAGTTCATGGTGCTGCTATGACTCATTTTCTCTTCATGAAGCCGCACTCTGTTTTCATCCAAGTTATTCCTCTCGGAACTGAATGGGCAGCAGAAGAGTATTATGGAGAACCTGCAAAGAAGCTTGGCTTGAAATACATTGGCTATCAAATTCTCGCAAGAGAGAGCTCTTTGTATGGCAAATATGATAGAGATGATCCTGTTCTTCGAGATCCACAGAGCGTAAACAAAAAGGGATGGGAATACACAAAGAAGATCTATCTTGATGGCCAAACTGTGAGATTAGACCTTGGGAGATTTCGGAAACGTTTGGTTCGTGCTTATGATTACATGTTGAGTAGAATGAACCAGCGTCCCCATCTGCAATATTCACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003973 GO:0005488 GO:0008150 GO:0008152 GO:0016491 GO:0016614 GO:0016899 GO:0036094 GO:0043167 GO:0043168 GO:0047545 GO:0048037 GO:0050660 GO:0050662 GO:0055114 GO:0071949 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DAO

Protein Analysis

535

Amino Acids

61.81

Weight (kDa)

5.82

Isoelectric Point (pI)

41.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_61	PF04577	347 - 430	1.1e-13	Glycosyltransferase 61

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000971)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56840
fragaria_vesca	FvH4_1g29380 FvH4_1g29380 FvH4_1g29380 FvH4_1g29380 FvH4_1g29380 FvH4_1g29380 FvH4_1g29380 FvH4_1g29380
malus_domestica	MD14G1091600.v1.1 MD14G1100100.v1.1
prunus_persica	Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1 Prupe.7G023400_v2.0.a1
pyrus_communis	pycom14g09020
rosa_chinensis	RchiOBHm_Chr3g0495031
rosa_laevigata	RLG00000022654
rosa_multiflora	Rmu_ssc0000058.1_g000010
rosa_roxburghii	Rroxscaffold_6G00390830
rosa_rugosa	Rorug03G0269400
rosa_samantha	Rh3AG318400 Rh3BG353500 Rh3CG350400 Rh3DG352800
rosa_wichuraiana	Rw0G014470 Rw0G015070 Rw3G027760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1351
AccI	GTMKAC	1 cut(s)	368
AciI	CCGC	2 cut(s)	16, 1274
AclI	AACGTT	1 cut(s)	1537
AclWI	GGATC	5 cut(s)	403, 479, 1099, 1421, 1436
AcoI	YGGCCR	1 cut(s)	1498
AcsI	RAATTY	4 cut(s)	647, 846, 1114, 1380
AcuI	CTGAAG	2 cut(s)	420, 778
AfaI	GTAC	3 cut(s)	553, 566, 674
AfiI	CCNNNNNNNGG	2 cut(s)	492, 493
AflIII	ACRYGT	1 cut(s)	1560
AgsI	TTSAA	7 cut(s)	222, 652, 959, 1010, 1057, 1151, 1363
AhlI	ACTAGT	1 cut(s)	500
AjuI	GAANNNNNNNTTGG	2 cut(s)	579, 611
Alw21I	GWGCWC	1 cut(s)	1400
Alw26I	GTCTC	4 cut(s)	72, 747, 1002, 1159
AlwI	GGATC	5 cut(s)	403, 479, 1099, 1421, 1436
AoxI	GGCC	3 cut(s)	828, 935, 1498
ApeKI	GCWGC	3 cut(s)	162, 1244, 1319
ApoI	RAATTY	4 cut(s)	647, 846, 1114, 1380
ArsI	GACNNNNNNTTYG	2 cut(s)	934, 966
AspLEI	GCGC	2 cut(s)	9, 979
AsuC2I	CCSGG	2 cut(s)	487, 911
AsuHPI	GGTGA	4 cut(s)	50, 173, 263, 1135
AxyI	CCTNAGG	1 cut(s)	825
BaeGI	GKGCMC	1 cut(s)	1207
BalI	TGGCCA	1 cut(s)	1500
BanII	GRGCYC	1 cut(s)	1400
BbsI	GAAGAC	1 cut(s)	408
Bbv12I	GWGCWC	1 cut(s)	1400
BbvI	GCAGC	3 cut(s)	174, 1231, 1331
BccI	CCATC	8 cut(s)	76, 287, 650, 874, 1123, 1461, 1490, 1596
BcnI	CCSGG	2 cut(s)	487, 911
BcoDI	GTCTC	4 cut(s)	72, 747, 1002, 1159
BcuI	ACTAGT	1 cut(s)	500
BfaI	CTAG	3 cut(s)	501, 557, 920
BfmI	CTRYAG	1 cut(s)	786
BfuAI	ACCTGC	1 cut(s)	1351
BglII	AGATCT	1 cut(s)	1485
BisI	GCNGC	4 cut(s)	163, 1245, 1274, 1320
BlsI	GCNGC	4 cut(s)	164, 1246, 1275, 1321
BmcAI	AGTACT	1 cut(s)	553
Bme1390I	CCNGG	2 cut(s)	487, 911
BmrFI	CCNGG	2 cut(s)	487, 911
BmrI	ACTGGG	2 cut(s)	358, 627
BmuI	ACTGGG	2 cut(s)	358, 627
BpiI	GAAGAC	1 cut(s)	408
BpuMI	CCSGG	2 cut(s)	487, 911
BsaI	GGTCTC	1 cut(s)	1159
BsaJI	CCNNGG	1 cut(s)	1519
Bsc4I	CCNNNNNNNGG	2 cut(s)	492, 493
Bse1I	ACTGG	4 cut(s)	364, 622, 634, 938
Bse21I	CCTNAGG	1 cut(s)	825
Bse3DI	GCAATG	2 cut(s)	534, 814
BseDI	CCNNGG	1 cut(s)	1519
BseGI	GGATG	4 cut(s)	358, 919, 1287, 1472
BseLI	CCNNNNNNNGG	2 cut(s)	492, 493
BseMI	GCAATG	2 cut(s)	534, 814
BseMII	CTCAG	4 cut(s)	83, 816, 833, 1125
BseNI	ACTGG	4 cut(s)	364, 622, 634, 938
BseSI	GKGCMC	1 cut(s)	1207
BseXI	GCAGC	3 cut(s)	174, 1231, 1331
BseYI	CCCAGC	1 cut(s)	684
BshFI	GGCC	3 cut(s)	830, 937, 1500
BsiHKAI	GWGCWC	1 cut(s)	1400
BsiSI	CCGG	2 cut(s)	487, 910
BslFI	GGGAC	2 cut(s)	667, 1569
BslI	CCNNNNNNNGG	2 cut(s)	492, 493
BsmAI	GTCTC	4 cut(s)	72, 747, 1002, 1159
BsmFI	GGGAC	2 cut(s)	667, 1569
BsnI	GGCC	3 cut(s)	830, 937, 1500
Bso31I	GGTCTC	1 cut(s)	1159
Bsp1286I	GDGCHC	2 cut(s)	1207, 1400
Bsp1407I	TGTACA	1 cut(s)	672
BspACI	CCGC	2 cut(s)	16, 1274
BspANI	GGCC	3 cut(s)	830, 937, 1500
BspCNI	CTCAG	4 cut(s)	82, 817, 834, 1126
BspHI	TCATGA	6 cut(s)	342, 643, 741, 850, 1224, 1266
BspMI	ACCTGC	1 cut(s)	1351
BspPI	GGATC	5 cut(s)	403, 479, 1099, 1421, 1436
BspTNI	GGTCTC	1 cut(s)	1159
BsrDI	GCAATG	2 cut(s)	534, 814
BsrGI	TGTACA	1 cut(s)	672
BsrI	ACTGG	4 cut(s)	364, 622, 634, 938
BssECI	CCNNGG	1 cut(s)	1519
BssT1I	CCWWGG	1 cut(s)	1519
Bst4CI	ACNGT	4 cut(s)	551, 576, 1507, 1605
Bst6I	CTCTTC	5 cut(s)	57, 146, 156, 1268, 1320
BstAPI	GCANNNNNTGC	1 cut(s)	1211
BstAUI	TGTACA	1 cut(s)	672
BstC8I	GCNNGC	1 cut(s)	246
BstDEI	CTNAG	5 cut(s)	69, 825, 842, 1018, 1134
BstF5I	GGATG	4 cut(s)	358, 919, 1287, 1472
BstHHI	GCGC	2 cut(s)	9, 979
BstMAI	GTCTC	4 cut(s)	72, 747, 1002, 1159
BstMWI	GCNNNNNNNGC	4 cut(s)	13, 985, 1069, 1211
BstNSI	RCATGY	1 cut(s)	1564
BstSCI	CCNGG	2 cut(s)	485, 909
BstSFI	CTRYAG	1 cut(s)	786
BstSLI	GKGCMC	1 cut(s)	1207
BstV1I	GCAGC	3 cut(s)	174, 1231, 1331
BstV2I	GAAGAC	1 cut(s)	408
BstX2I	RGATCY	3 cut(s)	395, 1441, 1485
BstYI	RGATCY	3 cut(s)	395, 1441, 1485
Bsu36I	CCTNAGG	1 cut(s)	825
BsuRI	GGCC	3 cut(s)	830, 937, 1500
BtsCI	GGATG	4 cut(s)	358, 919, 1287, 1472
BtsIMutI	CAGTG	5 cut(s)	32, 581, 802, 875, 999
BveI	ACCTGC	1 cut(s)	1351
Cac8I	GCNNGC	1 cut(s)	246
CciI	TCATGA	6 cut(s)	342, 643, 741, 850, 1224, 1266
CfoI	GCGC	2 cut(s)	9, 979
CseI	GACGC	1 cut(s)	1571
Csp6I	GTAC	3 cut(s)	552, 565, 673
CviAII	CATG	9 cut(s)	343, 590, 644, 742, 851, 1225, 1238, 1267, 1561
CviQI	GTAC	3 cut(s)	552, 565, 673
DdeI	CTNAG	5 cut(s)	69, 825, 842, 1018, 1134
EaeI	YGGCCR	1 cut(s)	1498
Eam1104I	CTCTTC	5 cut(s)	57, 146, 156, 1268, 1320
EarI	CTCTTC	5 cut(s)	57, 146, 156, 1268, 1320
Ecl136II	GAGCTC	1 cut(s)	1398
Eco130I	CCWWGG	1 cut(s)	1519
Eco24I	GRGCYC	1 cut(s)	1400
Eco31I	GGTCTC	1 cut(s)	1159
Eco53kI	GAGCTC	1 cut(s)	1398
Eco57I	CTGAAG	2 cut(s)	420, 778
Eco81I	CCTNAGG	1 cut(s)	825
EcoICRI	GAGCTC	1 cut(s)	1398
EcoRI	GAATTC	2 cut(s)	647, 846
EcoT14I	CCWWGG	1 cut(s)	1519
EcoT38I	GRGCYC	1 cut(s)	1400
ErhI	CCWWGG	1 cut(s)	1519
FaeI	CATG	9 cut(s)	346, 593, 647, 745, 854, 1228, 1241, 1270, 1564
FalI	AAGNNNNNCTT	4 cut(s)	1035, 1067, 1343, 1375
FaqI	GGGAC	2 cut(s)	667, 1569
FatI	CATG	9 cut(s)	342, 589, 643, 741, 850, 1224, 1237, 1266, 1560
FblI	GTMKAC	1 cut(s)	368
Fnu4HI	GCNGC	4 cut(s)	163, 1245, 1274, 1320
FokI	GGATG	4 cut(s)	365, 926, 1274, 1479
FriOI	GRGCYC	1 cut(s)	1400
Fsp4HI	GCNGC	4 cut(s)	163, 1245, 1274, 1320
FspBI	CTAG	3 cut(s)	501, 557, 920
GlaI	GCGC	2 cut(s)	8, 978
GluI	GCNGC	4 cut(s)	163, 1245, 1274, 1320
GsaI	CCCAGC	1 cut(s)	688
HaeIII	GGCC	3 cut(s)	830, 937, 1500
HapII	CCGG	2 cut(s)	487, 910
HgaI	GACGC	1 cut(s)	1571
HhaI	GCGC	2 cut(s)	9, 979
Hin1II	CATG	9 cut(s)	346, 593, 647, 745, 854, 1228, 1241, 1270, 1564
Hin6I	GCGC	2 cut(s)	7, 977
HinP1I	GCGC	2 cut(s)	7, 977
HindIII	AAGCTT	3 cut(s)	125, 986, 1352
HinfI	GANTC	4 cut(s)	65, 661, 869, 1252
HpaII	CCGG	2 cut(s)	487, 910
HphI	GGTGA	4 cut(s)	50, 173, 263, 1135
Hpy166II	GTNNAC	2 cut(s)	369, 1456
Hpy8I	GTNNAC	2 cut(s)	369, 1456
HpyAV	CCTTC	1 cut(s)	233
HpyCH4III	ACNGT	4 cut(s)	551, 576, 1507, 1605
HpyCH4IV	ACGT	3 cut(s)	74, 680, 1537
HpyCH4V	TGCA	5 cut(s)	92, 162, 539, 1346, 1594
HpyF10VI	GCNNNNNNNGC	4 cut(s)	13, 985, 1069, 1211
HpyF3I	CTNAG	5 cut(s)	69, 825, 842, 1018, 1134
HpySE526I	ACGT	3 cut(s)	74, 680, 1537
Hsp92II	CATG	9 cut(s)	346, 593, 647, 745, 854, 1228, 1241, 1270, 1564
HspAI	GCGC	2 cut(s)	7, 977
LmnI	GCTCC	4 cut(s)	274, 296, 419, 1019
Lsp1109I	GCAGC	3 cut(s)	174, 1231, 1331
MaeI	CTAG	3 cut(s)	501, 557, 920
MaeII	ACGT	3 cut(s)	74, 680, 1537
MflI	RGATCY	3 cut(s)	395, 1441, 1485
MhlI	GDGCHC	2 cut(s)	1207, 1400
MlsI	TGGCCA	1 cut(s)	1500
MluCI	AATT	8 cut(s)	524, 647, 730, 846, 942, 954, 1114, 1380
MluNI	TGGCCA	1 cut(s)	1500
MlyI	GAGTC	2 cut(s)	74, 1246
MmeI	TCCRAC	2 cut(s)	484, 610
Mox20I	TGGCCA	1 cut(s)	1500
MscI	TGGCCA	1 cut(s)	1500
MseI	TTAA	1 cut(s)	1209
Msp20I	TGGCCA	1 cut(s)	1500
MspA1I	CMGCKG	2 cut(s)	16, 602
MspI	CCGG	2 cut(s)	487, 910
MspR9I	CCNGG	2 cut(s)	487, 911
MwoI	GCNNNNNNNGC	4 cut(s)	13, 985, 1069, 1211
NciI	CCSGG	2 cut(s)	487, 911
NlaIII	CATG	9 cut(s)	346, 593, 647, 745, 854, 1228, 1241, 1270, 1564
NspI	RCATGY	1 cut(s)	1564
PagI	TCATGA	6 cut(s)	342, 643, 741, 850, 1224, 1266
PciI	ACATGT	1 cut(s)	1560
PcsI	WCGNNNNNNNCGW	1 cut(s)	1543
PfeI	GAWTC	2 cut(s)	661, 869
PfoI	TCCNGGA	1 cut(s)	909
PkrI	GCNGC	4 cut(s)	164, 1246, 1275, 1321
PleI	GAGTC	2 cut(s)	73, 1246
PpsI	GAGTC	2 cut(s)	73, 1246
PscI	ACATGT	1 cut(s)	1560
Psp124BI	GAGCTC	1 cut(s)	1400
Psp1406I	AACGTT	1 cut(s)	1537
PspFI	CCCAGC	1 cut(s)	684
PsrI	GAACNNNNNNTAC	2 cut(s)	352, 384
PsuI	RGATCY	3 cut(s)	395, 1441, 1485
PvuII	CAGCTG	1 cut(s)	602
RsaI	GTAC	3 cut(s)	553, 566, 674
RsaNI	GTAC	3 cut(s)	552, 565, 673
SacI	GAGCTC	1 cut(s)	1400
SaqAI	TTAA	1 cut(s)	1209
SatI	GCNGC	4 cut(s)	163, 1245, 1274, 1320
ScaI	AGTACT	1 cut(s)	553
SchI	GAGTC	2 cut(s)	74, 1246
ScrFI	CCNGG	2 cut(s)	487, 911
SduI	GDGCHC	2 cut(s)	1207, 1400
SfcI	CTRYAG	1 cut(s)	786
SpeI	ACTAGT	1 cut(s)	500
Sse9I	AATT	8 cut(s)	524, 647, 730, 846, 942, 954, 1114, 1380
SsiI	CCGC	2 cut(s)	16, 1274
SspI	AATATT	1 cut(s)	1598
SspMI	CTAG	3 cut(s)	501, 557, 920
SstI	GAGCTC	1 cut(s)	1400
StyD4I	CCNGG	2 cut(s)	485, 909
StyI	CCWWGG	1 cut(s)	1519
TaaI	ACNGT	4 cut(s)	551, 576, 1507, 1605
TaiI	ACGT	3 cut(s)	77, 683, 1540
TaqI	TCGA	6 cut(s)	284, 380, 614, 693, 940, 1438
TasI	AATT	8 cut(s)	524, 647, 730, 846, 942, 954, 1114, 1380
TatI	WGTACW	2 cut(s)	551, 672
TauI	GCSGC	1 cut(s)	1276
TfiI	GAWTC	2 cut(s)	661, 869
Tru1I	TTAA	1 cut(s)	1209
Tru9I	TTAA	1 cut(s)	1209
TscAI	CASTG	5 cut(s)	32, 581, 802, 882, 999
TseI	GCWGC	3 cut(s)	162, 1244, 1319
TspRI	CASTG	5 cut(s)	32, 581, 802, 882, 999
XapI	RAATTY	4 cut(s)	647, 846, 1114, 1380
XbaI	TCTAGA	1 cut(s)	556
XceI	RCATGY	1 cut(s)	1564
XmiI	GTMKAC	1 cut(s)	368
XspI	CTAG	3 cut(s)	501, 557, 920
ZrmI	AGTACT	1 cut(s)	553

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.