Rw0G014470

L-2-hydroxyglutarate dehydrogenase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00648
Physical Location & Seq
Forward (+)
25631 .. 28480
2850 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G014470.1

Sequence Viewer

Length: 1230 bp
ATGCTGAAAACAACACTAAAGAGATTGGAGAGGAACTCGGTTTTGAAGAGTGTGTGGAGTCGTAATTATTGTATGAGCAGTGGAATCCCGAGAGAGAGAGTAGAGTGCGTGGTGATAGGAGCAGGTGTAGTGGGATTATCAGTGGCTAGAGAGCTTGCTTTAAGAGGTCGACAGGTCTTAGTCCTAGACTCTGCTCCCACCTTCGGCACTGCCACCAGTTCCCGCAACAGCGAAGTTATCCATGCCGGCATCTACTACCCTCCTAAAGGAAGAGACTTGCTGTACAAATATTGCTCTCAGCGCCAAATTCCTCACAAACAAATTGGTAAACTCATTGTTGCCACTGGATCGTCTGAGATTCAAAAGTTGCATAATTTACTGGATCGTGGGATAAAAAATGGAGTCGATGGTCTGGTGATGATGGAGGGTTCCGAAGCCATGAGAATGGAACCCGAATTAAGATGCTTGAAAGCCTTACTATCACCAGTTTCTGGGATTGTCGATACACATTCTTTGATGCTGTCTTTGGTGGGTGAAGCTGAGAATTGTGGCACAATCTTCTGCTATAACACTACTGTTATTGGTGGCCACATAGAACAAAATCAATTGTGCCTTCATATTTCTCAAACCAAACATCTTGAAATGTGCAATGGAAATTCTCCCCTGCAACCAGAGATAGTACTCATTCCTAAGGTCGTAGTGAACTCTGCTGGCTTGAGTGCCCCTGCCCTTGCTAAGCGATTTGATGGCCTCCAAAGTGCAGTTATTCCCACTGCTCATTATGCTCGTGGGTGCTACTTCACTCTATCCAATACTGGAATCTGTCCTTTCAAACATTTGATATATCCTATACCAGAGGACGGTGGCCTTGGAGTGCATGTTACTTTGGATTTAAATGGTCAGGTCAAGTTTGGTCCGAATGTGGATTGGATTGATGGAATTGATGACATTTCAAGCTTCCTGAATAAGTTTGACTATTCCGTATGTACGAGTCACATGAAGCATTTTTACCCTGAGATAAAGAAGTACTACCCGAATCTAACAGATGAATCCCTCGAGCCAGGTTATGCAGGGATTAGACCGAAGCTTTCAGGTCCTGGACAGTCTCCAGTTGATTTTGTGATACAGCATGATTTGAATCTTCTTATTCCATGGACAAAGTCAGGTTTGTTCAGTTCAGTATTAACTCAAGTTACCGACTTGGCCCAATCTTTCACAGTTAACTTCTGA

Protein Analysis

409

Amino Acids

44.89

Weight (kDa)

7.96

Isoelectric Point (pI)

40.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DAO PF01266 36 - 370 5.8e-43 FAD dependent oxidoreductase
NAD_binding_8 PF13450 38 - 76 1e-06 NAD(P)-binding Rossmann-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 113
Acc36I ACCTGC 1 cut(s) 113
AccB7I CCANNNNNTGG 1 cut(s) 491
AccI GTMKAC 1 cut(s) 169
AciI CCGC 1 cut(s) 223
AclWI GGATC 2 cut(s) 355, 390
AcoI YGGCCR 1 cut(s) 586
AcsI RAATTY 2 cut(s) 306, 655
AfaI GTAC 4 cut(s) 284, 681, 988, 1028
AfiI CCNNNNNNNGG 4 cut(s) 203, 266, 491, 860
AgsI TTSAA 7 cut(s) 46, 362, 469, 641, 832, 954, 1138
AjnI CCWGG 2 cut(s) 1060, 1096
AluBI AGCT 4 cut(s) 154, 539, 957, 1087
AluI AGCT 4 cut(s) 154, 539, 957, 1087
Alw26I GTCTC 2 cut(s) 267, 1110
AlwI GGATC 2 cut(s) 355, 390
AlwNI CAGNNNCTG 2 cut(s) 491, 1097
Ama87I CYCGRG 2 cut(s) 88, 1055
AoxI GGCC 4 cut(s) 586, 748, 865, 1203
ApoI RAATTY 2 cut(s) 306, 655
AspLEI GCGC 1 cut(s) 303
AspS9I GGNCC 3 cut(s) 914, 1094, 1204
AsuHPI GGTGA 4 cut(s) 124, 427, 474, 545
AvaI CYCGRG 2 cut(s) 88, 1055
AvaII GGWCC 2 cut(s) 914, 1094
AxyI CCTNAGG 1 cut(s) 690
BaeGI GKGCMC 1 cut(s) 724
BalI TGGCCA 1 cut(s) 588
BarI GAAGNNNNNNTAC 2 cut(s) 992, 1024
BauI CACGAG 1 cut(s) 786
BccI CCATC 4 cut(s) 401, 415, 740, 929
BciT130I CCWGG 2 cut(s) 1062, 1098
BcoDI GTCTC 2 cut(s) 267, 1110
BfaI CTAG 2 cut(s) 147, 185
BfoI RGCGCY 1 cut(s) 304
BfuAI ACCTGC 1 cut(s) 113
BlpI GCTNAGC 1 cut(s) 735
BmcAI AGTACT 2 cut(s) 681, 1028
Bme1390I CCNGG 2 cut(s) 1062, 1098
Bme18I GGWCC 2 cut(s) 914, 1094
BmeT110I CYCGRG 2 cut(s) 88, 1055
BmgT120I GGNCC 3 cut(s) 914, 1094, 1204
BmiI GGNNCC 2 cut(s) 430, 450
BmrFI CCNGG 2 cut(s) 1062, 1098
BmsI GCATC 3 cut(s) 258, 452, 507
BplI GAGNNNNNCTC 2 cut(s) 20, 52
BpmI CTGGAG 1 cut(s) 1092
Bpu1102I GCTNAGC 1 cut(s) 735
BpuEI CTTGAG 2 cut(s) 736, 1173
BsaBI GATNNNNATC 1 cut(s) 1137
BsaJI CCNNGG 2 cut(s) 868, 1151
BsaXI ACNNNNNCTCC 4 cut(s) 111, 141, 864, 894
Bsc4I CCNNNNNNNGG 4 cut(s) 203, 266, 491, 860
Bse118I RCCGGY 1 cut(s) 245
Bse1I ACTGG 6 cut(s) 216, 349, 384, 485, 820, 1109
Bse21I CCTNAGG 1 cut(s) 690
Bse3DI GCAATG 1 cut(s) 655
Bse8I GATNNNNATC 1 cut(s) 1137
BseBI CCWGG 2 cut(s) 1062, 1098
BseDI CCNNGG 2 cut(s) 868, 1151
BseJI GATNNNNATC 1 cut(s) 1137
BseLI CCNNNNNNNGG 4 cut(s) 203, 266, 491, 860
BseMI GCAATG 1 cut(s) 655
BseMII CTCAG 4 cut(s) 311, 345, 531, 1005
BseNI ACTGG 6 cut(s) 216, 349, 384, 485, 820, 1109
BseSI GKGCMC 1 cut(s) 724
BsgI GTGCAG 1 cut(s) 780
BshFI GGCC 4 cut(s) 588, 750, 867, 1205
BsiHKCI CYCGRG 2 cut(s) 88, 1055
BsiSI CCGG 1 cut(s) 246
BslI CCNNNNNNNGG 4 cut(s) 203, 266, 491, 860
BsmAI GTCTC 2 cut(s) 267, 1110
BsnI GGCC 4 cut(s) 588, 750, 867, 1205
BsoBI CYCGRG 2 cut(s) 88, 1055
Bsp1286I GDGCHC 1 cut(s) 724
Bsp1407I TGTACA 1 cut(s) 282
Bsp143I GATC 2 cut(s) 347, 382
Bsp1720I GCTNAGC 1 cut(s) 735
Bsp19I CCATGG 1 cut(s) 1151
BspACI CCGC 1 cut(s) 223
BspANI GGCC 4 cut(s) 588, 750, 867, 1205
BspCNI CTCAG 4 cut(s) 310, 346, 532, 1006
BspLI GGNNCC 2 cut(s) 430, 450
BspMI ACCTGC 1 cut(s) 113
BspPI GGATC 2 cut(s) 355, 390
BsrDI GCAATG 1 cut(s) 655
BsrFI RCCGGY 1 cut(s) 245
BsrGI TGTACA 1 cut(s) 282
BsrI ACTGG 6 cut(s) 216, 349, 384, 485, 820, 1109
BssAI RCCGGY 1 cut(s) 245
BssECI CCNNGG 2 cut(s) 868, 1151
BssMI GATC 2 cut(s) 347, 382
BssSI CACGAG 1 cut(s) 786
BssT1I CCWWGG 2 cut(s) 868, 1151
Bst2BI CACGAG 1 cut(s) 786
Bst2UI CCWGG 2 cut(s) 1062, 1098
Bst4CI ACNGT 4 cut(s) 577, 863, 1104, 1219
Bst6I CTCTTC 2 cut(s) 41, 265
BstAUI TGTACA 1 cut(s) 282
BstC8I GCNNGC 3 cut(s) 156, 247, 712
BstDEI CTNAG 7 cut(s) 178, 297, 354, 540, 690, 735, 1014
BstDSI CCRYGG 1 cut(s) 1151
BstENI CCTNNNNNAGG 1 cut(s) 264
BstH2I RGCGCY 1 cut(s) 304
BstHHI GCGC 1 cut(s) 303
BstKTI GATC 2 cut(s) 350, 385
BstMAI GTCTC 2 cut(s) 267, 1110
BstMBI GATC 2 cut(s) 347, 382
BstMWI GCNNNNNNNGC 2 cut(s) 300, 782
BstNI CCWGG 2 cut(s) 1062, 1098
BstNSI RCATGY 1 cut(s) 881
BstSCI CCNGG 2 cut(s) 1060, 1096
BstSLI GKGCMC 1 cut(s) 724
BstXI CCANNNNNNTGG 1 cut(s) 445
Bsu36I CCTNAGG 1 cut(s) 690
BsuRI GGCC 4 cut(s) 588, 750, 867, 1205
BtgI CCRYGG 1 cut(s) 1151
BtsI GCAGTG 3 cut(s) 85, 207, 771
BtsIMutI CAGTG 5 cut(s) 85, 147, 207, 342, 771
BveI ACCTGC 1 cut(s) 113
Cac8I GCNNGC 3 cut(s) 156, 247, 712
CaiI CAGNNNCTG 2 cut(s) 491, 1097
CfoI GCGC 1 cut(s) 303
Cfr10I RCCGGY 1 cut(s) 245
Cfr13I GGNCC 3 cut(s) 914, 1094, 1204
Csp6I GTAC 4 cut(s) 283, 680, 987, 1027
CviAII CATG 6 cut(s) 242, 439, 878, 997, 1130, 1152
CviQI GTAC 4 cut(s) 283, 680, 987, 1027
DdeI CTNAG 7 cut(s) 178, 297, 354, 540, 690, 735, 1014
DpnI GATC 2 cut(s) 349, 384
DpnII GATC 2 cut(s) 347, 382
DraI TTTAAA 1 cut(s) 894
EaeI YGGCCR 1 cut(s) 586
Eam1104I CTCTTC 2 cut(s) 41, 265
EarI CTCTTC 2 cut(s) 41, 265
Eco130I CCWWGG 2 cut(s) 868, 1151
Eco47I GGWCC 2 cut(s) 914, 1094
Eco81I CCTNAGG 1 cut(s) 690
Eco88I CYCGRG 2 cut(s) 88, 1055
EcoNI CCTNNNNNAGG 1 cut(s) 264
EcoO109I RGGNCCY 1 cut(s) 1094
EcoRII CCWGG 2 cut(s) 1060, 1096
EcoT14I CCWWGG 2 cut(s) 868, 1151
ErhI CCWWGG 2 cut(s) 868, 1151
FaeI CATG 6 cut(s) 245, 442, 881, 1000, 1133, 1155
FatI CATG 6 cut(s) 241, 438, 877, 996, 1129, 1151
FauI CCCGC 1 cut(s) 230
FblI GTMKAC 1 cut(s) 169
FspBI CTAG 2 cut(s) 147, 185
GlaI GCGC 1 cut(s) 302
GsuI CTGGAG 1 cut(s) 1092
HaeII RGCGCY 1 cut(s) 304
HaeIII GGCC 4 cut(s) 588, 750, 867, 1205
HapII CCGG 1 cut(s) 246
HhaI GCGC 1 cut(s) 303
Hin1II CATG 6 cut(s) 245, 442, 881, 1000, 1133, 1155
Hin6I GCGC 1 cut(s) 301
HinP1I GCGC 1 cut(s) 301
HincII GTYRAC 2 cut(s) 170, 1222
HindII GTYRAC 2 cut(s) 170, 1222
HindIII AAGCTT 2 cut(s) 955, 1085
HpaI GTTAAC 1 cut(s) 1222
HpaII CCGG 1 cut(s) 246
HphI GGTGA 4 cut(s) 124, 427, 474, 545
Hpy166II GTNNAC 4 cut(s) 170, 329, 703, 1222
Hpy188I TCNGA 4 cut(s) 355, 433, 918, 1229
Hpy188III TCNNGA 3 cut(s) 88, 638, 961
Hpy8I GTNNAC 4 cut(s) 170, 329, 703, 1222
HpyAV CCTTC 2 cut(s) 211, 623
HpyCH4III ACNGT 4 cut(s) 577, 863, 1104, 1219
HpyCH4V TGCA 6 cut(s) 370, 648, 667, 761, 877, 1070
HpyF10VI GCNNNNNNNGC 2 cut(s) 300, 782
HpyF3I CTNAG 7 cut(s) 178, 297, 354, 540, 690, 735, 1014
Hsp92II CATG 6 cut(s) 245, 442, 881, 1000, 1133, 1155
HspAI GCGC 1 cut(s) 301
KroI GCCGGC 1 cut(s) 245
KroNI GCCGGC 1 cut(s) 247
KspAI GTTAAC 1 cut(s) 1222
Kzo9I GATC 2 cut(s) 347, 382
LmnI GCTCC 2 cut(s) 119, 199
LweI GCATC 3 cut(s) 258, 452, 507
MaeI CTAG 2 cut(s) 147, 185
MaeIII GTNAC 3 cut(s) 880, 992, 1192
MalI GATC 2 cut(s) 349, 384
MboI GATC 2 cut(s) 347, 382
MboII GAAGA 4 cut(s) 58, 282, 550, 1133
MfeI CAATTG 1 cut(s) 605
MhlI GDGCHC 1 cut(s) 724
MlsI TGGCCA 1 cut(s) 588
MluCI AATT 9 cut(s) 64, 306, 321, 373, 455, 544, 605, 655, 939
MluNI TGGCCA 1 cut(s) 588
MlyI GAGTC 4 cut(s) 67, 182, 411, 1000
MnlI CCTC 8 cut(s) 24, 158, 270, 321, 418, 761, 850, 1064
Mox20I TGGCCA 1 cut(s) 588
MroNI GCCGGC 1 cut(s) 245
MscI TGGCCA 1 cut(s) 588
MseI TTAA 5 cut(s) 161, 458, 893, 1184, 1221
MslI CAYNNNNRTG 1 cut(s) 443
Msp20I TGGCCA 1 cut(s) 588
MspI CCGG 1 cut(s) 246
MspR9I CCNGG 2 cut(s) 1062, 1098
MunI CAATTG 1 cut(s) 605
MvaI CCWGG 2 cut(s) 1062, 1098
MwoI GCNNNNNNNGC 2 cut(s) 300, 782
NaeI GCCGGC 1 cut(s) 247
NcoI CCATGG 1 cut(s) 1151
NdeII GATC 2 cut(s) 347, 382
NgoMIV GCCGGC 1 cut(s) 245
NlaIII CATG 6 cut(s) 245, 442, 881, 1000, 1133, 1155
NlaIV GGNNCC 2 cut(s) 430, 450
NmuCI GTSAC 1 cut(s) 992
NspI RCATGY 1 cut(s) 881
PaeR7I CTCGAG 1 cut(s) 1055
PaqCI CACCTGC 1 cut(s) 113
PdiI GCCGGC 1 cut(s) 247
PfeI GAWTC 6 cut(s) 84, 358, 819, 1036, 1049, 1138
PflFI GACNNNGTC 1 cut(s) 1159
PflMI CCANNNNNTGG 1 cut(s) 491
PfoI TCCNGGA 1 cut(s) 1096
PleI GAGTC 4 cut(s) 66, 182, 410, 999
PpsI GAGTC 4 cut(s) 66, 182, 410, 999
PpuMI RGGWCCY 1 cut(s) 1094
Psp5II RGGWCCY 1 cut(s) 1094
Psp6I CCWGG 2 cut(s) 1060, 1096
PspGI CCWGG 2 cut(s) 1060, 1096
PspN4I GGNNCC 2 cut(s) 430, 450
PspPI GGNCC 3 cut(s) 914, 1094, 1204
PspPPI RGGWCCY 1 cut(s) 1094
PspXI VCTCGAGB 1 cut(s) 1055
PstNI CAGNNNCTG 2 cut(s) 491, 1097
PsyI GACNNNGTC 1 cut(s) 1159
RsaI GTAC 4 cut(s) 284, 681, 988, 1028
RsaNI GTAC 4 cut(s) 283, 680, 987, 1027
RseI CAYNNNNRTG 1 cut(s) 443
SalI GTCGAC 1 cut(s) 168
SaqAI TTAA 5 cut(s) 161, 458, 893, 1184, 1221
Sau3AI GATC 2 cut(s) 347, 382
Sau96I GGNCC 3 cut(s) 914, 1094, 1204
ScaI AGTACT 2 cut(s) 681, 1028
SchI GAGTC 4 cut(s) 67, 182, 411, 1000
ScrFI CCNGG 2 cut(s) 1062, 1098
SduI GDGCHC 1 cut(s) 724
SfaNI GCATC 3 cut(s) 258, 452, 507
Sfr274I CTCGAG 1 cut(s) 1055
SinI GGWCC 2 cut(s) 914, 1094
SlaI CTCGAG 1 cut(s) 1055
SmiI ATTTAAAT 1 cut(s) 894
SmiMI CAYNNNNRTG 1 cut(s) 443
SmlI CTYRAG 3 cut(s) 715, 1055, 1188
SmoI CTYRAG 3 cut(s) 715, 1055, 1188
Sse9I AATT 9 cut(s) 64, 306, 321, 373, 455, 544, 605, 655, 939
SsiI CCGC 1 cut(s) 223
SspI AATATT 1 cut(s) 290
SspMI CTAG 2 cut(s) 147, 185
StyD4I CCNGG 2 cut(s) 1060, 1096
StyI CCWWGG 2 cut(s) 868, 1151
SwaI ATTTAAAT 1 cut(s) 894
TaaI ACNGT 4 cut(s) 577, 863, 1104, 1219
TaqI TCGA 4 cut(s) 169, 405, 501, 1056
TaqII GACCGA 1 cut(s) 1096
TasI AATT 9 cut(s) 64, 306, 321, 373, 455, 544, 605, 655, 939
TatI WGTACW 3 cut(s) 282, 679, 1026
TfiI GAWTC 6 cut(s) 84, 358, 819, 1036, 1049, 1138
Tru1I TTAA 5 cut(s) 161, 458, 893, 1184, 1221
Tru9I TTAA 5 cut(s) 161, 458, 893, 1184, 1221
TscAI CASTG 5 cut(s) 85, 147, 214, 349, 778
TseFI GTSAC 1 cut(s) 992
Tsp45I GTSAC 1 cut(s) 992
TspDTI ATGAA 3 cut(s) 605, 1013, 1062
TspGWI ACGGA 1 cut(s) 970
TspRI CASTG 5 cut(s) 85, 147, 214, 349, 778
Tth111I GACNNNGTC 1 cut(s) 1159
Van91I CCANNNNNTGG 1 cut(s) 491
VpaK11BI GGWCC 2 cut(s) 914, 1094
XagI CCTNNNNNAGG 1 cut(s) 264
XapI RAATTY 2 cut(s) 306, 655
XceI RCATGY 1 cut(s) 881
XhoI CTCGAG 1 cut(s) 1055
XmiI GTMKAC 1 cut(s) 169
XspI CTAG 2 cut(s) 147, 185
ZrmI AGTACT 2 cut(s) 681, 1028
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.