MD14G1116500.v1.1

FAD-dependent monooxygenase required for the C5-ring hydroxylation during ubiquinone biosynthesis. Catalyzes the hydroxylation of 3-polyprenyl-4-hydroxybenzoic acid to 3- polyprenyl-4,5-dihydroxybenzoic acid. The electrons required for the hydroxylation reaction may be funneled indirectly from NADPH via a ferredoxin ferredoxin reductase system to COQ6

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
Physical Location & Seq
Forward (+)
18917208 .. 18922055
4848 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1116500.v1.1.491

Sequence Viewer

Length: 1407 bp
ATGGTGCCCAACCCAGCAATGATCATGTGGAGAGGCCAAATTTTTCGAATAAATGTGATCCCTACGACATTGCTATTATTGGAGGAGGGATGGTTGGCATGGCCCTTGCTTGTTCCTTGGGTAACAAAAATGCCATTGACAAAGCACTTGAAAGTTGCCATCATTGATAGCAATCCTGCAGTATCAAATGGACTTAGCATCAAGAAAGAAGACCCCCCTGATCCAAGGGCCAGTGCAGTAGCACCTGCAACCATATCTCTCTTCCAAGATATTGGTGCTTGGAAATATGTGGAACAGAACAGGCATGCGTATTTTGATCAAATGCAGGTTTGGGACTATACTGGCTTAGGTTATACAAGATACAATGCAAGAGATGTACATAAAGATTCTCTAGGGTGTGTAGTGGAGAATAAAGTACTGCACAGTTCCCTATTGTCATGTATGCAGAATACAGATTTCCAGAAGACTGTCTACCCTTCGAGATTGTCTACAATGACTTTACAGCCAAGAAACTTATCCATGGGGATGGAAAGCACATCATCTGGATTGAATGAGCAGGGGAACTTAGCGAAGCTTGATCTAATTGACGGCAACAGTCTGTATGCAAAGTTGGTGGTGGGAGCTGATGGGTCCAAGTCACGTGTTAGAGAGTTGGCAGGATTCAAGACAACCGGATGGAATTACTCGCAGAACGCAATCATTTGTACTGTTGAACATAGTGTAGAAAACCGATTTGCATGGCAACGCTTTCTACCTGCTGGGCCAATTGCACTTTTGCCAATAGGTGATAATTTCAGTAACATTGTTTGGACCATGAACCCGAACGAAGCAACTGACCGCAAGTTAAAGGCTGAGGATGAATTTTTGAAAGATGTCAATTATGCTCTGGATTATGGATTTGGCCCTCATCCTAAGTCAAGCACCTCGGGAGGTGGAAGCATATTTTCTTGGTTTAAAACAGACACGAATTTATCAGCCAATGACTGCTTCAAAGTTCCGCCAAAAGTGTTGAAGTTGGCATCTGAGAGAACGGTGTTTCCTTTGTCTTTGATGCATGCCAACGACTACGTGTCAAAGCATGTGGTTCTAATTGGCGATGCAGCACATACCGTTCACCCTTTGGCGGGCAAGGGGTTAATTTGGGGTTTGGAGACGCATTTGCTCTATCAAGAATCATTTGTATTGTTGTTGAAGAAATATGAAGCAGAGAGGAAATCGGCAAATGTCACAATGATGGCAATCCTGGACGGTTTCCAGAAGGCTTACTCTGTTGATTTCGGACCTTTAAATGTACTGCGGCCTGCAGCATTCAACGGAGCGCAGTACATTCCACCCCTTAAGAGGAGTATCATTTCATATGCCCTCAGGGGATCAAAGATTGCCAATTTTTTCTTGAGACGGACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

469

Amino Acids

52.22

Weight (kDa)

9.08

Isoelectric Point (pI)

27.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 71 - 291 5.4e-06 FAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011500)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 253
Acc36I ACCTGC 3 cut(s) 253, 316, 763
AccB1I GGYRCC 1 cut(s) 4
AccI GTMKAC 2 cut(s) 471, 488
AciI CCGC 4 cut(s) 838, 998, 1124, 1297
AclWI GGATC 3 cut(s) 52, 215, 1378
AcsI RAATTY 3 cut(s) 39, 860, 967
AcvI CACGTG 1 cut(s) 641
AfaI GTAC 5 cut(s) 378, 417, 706, 1293, 1325
AfiI CCNNNNNNNGG 3 cut(s) 1123, 1124, 1341
AflII CTTAAG 1 cut(s) 1337
AflIII ACRYGT 2 cut(s) 640, 1068
AgsI TTSAA 9 cut(s) 151, 550, 664, 713, 868, 991, 1012, 1192, 1312
AhdI GACNNNNNGTC 1 cut(s) 1069
AjnI CCWGG 1 cut(s) 1242
AjuI GAANNNNNNNTTGG 2 cut(s) 971, 1003
AloI GAACNNNNNNTCC 2 cut(s) 1021, 1053
AluBI AGCT 2 cut(s) 574, 623
AluI AGCT 2 cut(s) 574, 623
Alw26I GTCTC 2 cut(s) 1145, 1390
AlwI GGATC 3 cut(s) 52, 215, 1378
Ama87I CYCGRG 1 cut(s) 925
AoxI GGCC 6 cut(s) 34, 101, 228, 761, 901, 1298
ApeKI GCWGC 2 cut(s) 1100, 1304
ApoI RAATTY 3 cut(s) 39, 860, 967
AspLEI GCGC 1 cut(s) 1321
AspS9I GGNCC 7 cut(s) 102, 228, 630, 761, 810, 902, 1280
AsuHPI GGTGA 2 cut(s) 797, 1106
AsuII TTCGAA 1 cut(s) 46
AvaI CYCGRG 1 cut(s) 925
AvaII GGWCC 3 cut(s) 630, 810, 1280
AxyI CCTNAGG 1 cut(s) 1364
BaeGI GKGCMC 1 cut(s) 9
BanI GGYRCC 1 cut(s) 4
BarI GAAGNNNNNNTAC 2 cut(s) 455, 487
BbrPI CACGTG 1 cut(s) 641
BbsI GAAGAC 2 cut(s) 216, 470
BbvCI CCTCAGC 1 cut(s) 852
BbvI GCAGC 2 cut(s) 1112, 1316
BccI CCATC 6 cut(s) 84, 167, 520, 620, 669, 1228
BceAI ACGGC 1 cut(s) 604
BciT130I CCWGG 1 cut(s) 1244
BclI TGATCA 2 cut(s) 21, 316
BcoDI GTCTC 2 cut(s) 1145, 1390
BfaI CTAG 1 cut(s) 392
BfmI CTRYAG 2 cut(s) 177, 1302
BfrI CTTAAG 1 cut(s) 1337
BfuAI ACCTGC 3 cut(s) 253, 316, 763
BisI GCNGC 3 cut(s) 1101, 1298, 1305
BlsI GCNGC 3 cut(s) 1102, 1299, 1306
BmcAI AGTACT 1 cut(s) 417
Bme1390I CCNGG 1 cut(s) 1244
Bme18I GGWCC 3 cut(s) 630, 810, 1280
BmeRI GACNNNNNGTC 1 cut(s) 1069
BmeT110I CYCGRG 1 cut(s) 925
BmgT120I GGNCC 7 cut(s) 102, 228, 630, 761, 810, 902, 1280
BmiI GGNNCC 2 cut(s) 6, 631
BmrFI CCNGG 1 cut(s) 1244
BmsI GCATC 4 cut(s) 207, 1028, 1041, 1087
BpiI GAAGAC 2 cut(s) 216, 470
Bpu10I CCTNAGC 2 cut(s) 346, 852
Bpu14I TTCGAA 1 cut(s) 46
BsaAI YACGTR 2 cut(s) 641, 1069
BsaBI GATNNNNATC 2 cut(s) 171, 1238
BsaJI CCNNGG 4 cut(s) 116, 224, 519, 924
BsaWI WCCGGW 1 cut(s) 671
BsaXI ACNNNNNCTCC 2 cut(s) 77, 107
Bsc4I CCNNNNNNNGG 3 cut(s) 1123, 1124, 1341
Bse1I ACTGG 2 cut(s) 231, 346
Bse21I CCTNAGG 1 cut(s) 1364
Bse3DI GCAATG 2 cut(s) 24, 68
Bse8I GATNNNNATC 2 cut(s) 171, 1238
BseBI CCWGG 1 cut(s) 1244
BseDI CCNNGG 4 cut(s) 116, 224, 519, 924
BseGI GGATG 5 cut(s) 95, 531, 680, 862, 907
BseJI GATNNNNATC 2 cut(s) 171, 1238
BseLI CCNNNNNNNGG 3 cut(s) 1123, 1124, 1341
BseMI GCAATG 2 cut(s) 24, 68
BseMII CTCAG 3 cut(s) 843, 1014, 1378
BseNI ACTGG 2 cut(s) 231, 346
BseRI GAGGAG 2 cut(s) 98, 1357
BseSI GKGCMC 1 cut(s) 9
BseXI GCAGC 2 cut(s) 1112, 1316
BseYI CCCAGC 2 cut(s) 13, 758
BsgI GTGCAG 2 cut(s) 255, 404
BshFI GGCC 6 cut(s) 36, 103, 230, 763, 903, 1300
BshNI GGYRCC 1 cut(s) 4
BsiHKCI CYCGRG 1 cut(s) 925
BsiSI CCGG 1 cut(s) 672
BslFI GGGAC 1 cut(s) 347
BslI CCNNNNNNNGG 3 cut(s) 1123, 1124, 1341
BsmAI GTCTC 2 cut(s) 1145, 1390
BsmBI CGTCTC 2 cut(s) 1145, 1390
BsmFI GGGAC 1 cut(s) 347
BsmI GAATGC 1 cut(s) 1307
BsnI GGCC 6 cut(s) 36, 103, 230, 763, 903, 1300
BsoBI CYCGRG 1 cut(s) 925
Bsp119I TTCGAA 1 cut(s) 46
Bsp1286I GDGCHC 1 cut(s) 9
Bsp1407I TGTACA 1 cut(s) 376
Bsp143I GATC 6 cut(s) 21, 57, 220, 316, 577, 1370
Bsp19I CCATGG 1 cut(s) 519
BspACI CCGC 4 cut(s) 838, 998, 1124, 1297
BspANI GGCC 6 cut(s) 36, 103, 230, 763, 903, 1300
BspCNI CTCAG 3 cut(s) 844, 1015, 1377
BspLI GGNNCC 2 cut(s) 6, 631
BspMAI CTGCAG 2 cut(s) 181, 1306
BspMI ACCTGC 3 cut(s) 253, 316, 763
BspPI GGATC 3 cut(s) 52, 215, 1378
BspT104I TTCGAA 1 cut(s) 46
BspT107I GGYRCC 1 cut(s) 4
BspTI CTTAAG 1 cut(s) 1337
BsrDI GCAATG 2 cut(s) 24, 68
BsrGI TGTACA 1 cut(s) 376
BsrI ACTGG 2 cut(s) 231, 346
BssECI CCNNGG 4 cut(s) 116, 224, 519, 924
BssMI GATC 6 cut(s) 21, 57, 220, 316, 577, 1370
BssT1I CCWWGG 3 cut(s) 116, 224, 519
Bst2UI CCWGG 1 cut(s) 1244
Bst4CI ACNGT 7 cut(s) 425, 469, 596, 709, 1033, 1111, 1250
Bst6I CTCTTC 1 cut(s) 266
BstAFI CTTAAG 1 cut(s) 1337
BstAUI TGTACA 1 cut(s) 376
BstBAI YACGTR 2 cut(s) 641, 1069
BstBI TTCGAA 1 cut(s) 46
BstC8I GCNNGC 4 cut(s) 306, 1056, 1126, 1302
BstDEI CTNAG 7 cut(s) 194, 346, 565, 852, 912, 1023, 1364
BstDSI CCRYGG 1 cut(s) 519
BstF5I GGATG 5 cut(s) 95, 531, 680, 862, 907
BstHHI GCGC 1 cut(s) 1321
BstKTI GATC 6 cut(s) 24, 60, 223, 319, 580, 1373
BstMAI GTCTC 2 cut(s) 1145, 1390
BstMBI GATC 6 cut(s) 21, 57, 220, 316, 577, 1370
BstNI CCWGG 1 cut(s) 1244
BstNSI RCATGY 3 cut(s) 308, 1058, 1082
BstSCI CCNGG 1 cut(s) 1242
BstSFI CTRYAG 2 cut(s) 177, 1302
BstSLI GKGCMC 1 cut(s) 9
BstV1I GCAGC 2 cut(s) 1112, 1316
BstV2I GAAGAC 2 cut(s) 216, 470
BstXI CCANNNNNNTGG 2 cut(s) 272, 526
Bsu36I CCTNAGG 1 cut(s) 1364
BsuRI GGCC 6 cut(s) 36, 103, 230, 763, 903, 1300
BtgI CCRYGG 1 cut(s) 519
BtgZI GCGATG 1 cut(s) 1110
BtsCI GGATG 5 cut(s) 95, 531, 680, 862, 907
BtsIMutI CAGTG 1 cut(s) 238
BveI ACCTGC 3 cut(s) 253, 316, 763
Cac8I GCNNGC 4 cut(s) 306, 1056, 1126, 1302
CfoI GCGC 1 cut(s) 1321
Cfr13I GGNCC 7 cut(s) 102, 228, 630, 761, 810, 902, 1280
CseI GACGC 1 cut(s) 1162
Csp6I GTAC 5 cut(s) 377, 416, 705, 1292, 1324
CspCI CAANNNNNGTGG 4 cut(s) 594, 629, 1062, 1097
CviAII CATG 9 cut(s) 25, 99, 305, 438, 520, 738, 814, 1055, 1079
CviQI GTAC 5 cut(s) 377, 416, 705, 1292, 1324
DdeI CTNAG 7 cut(s) 194, 346, 565, 852, 912, 1023, 1364
DpnI GATC 6 cut(s) 23, 59, 222, 318, 579, 1372
DpnII GATC 6 cut(s) 21, 57, 220, 316, 577, 1370
DraI TTTAAA 2 cut(s) 955, 1287
DriI GACNNNNNGTC 1 cut(s) 1069
Eam1104I CTCTTC 1 cut(s) 266
Eam1105I GACNNNNNGTC 1 cut(s) 1069
EarI CTCTTC 1 cut(s) 266
EciI GGCGGA 1 cut(s) 987
Eco130I CCWWGG 3 cut(s) 116, 224, 519
Eco47I GGWCC 3 cut(s) 630, 810, 1280
Eco72I CACGTG 1 cut(s) 641
Eco81I CCTNAGG 1 cut(s) 1364
Eco88I CYCGRG 1 cut(s) 925
EcoRII CCWGG 1 cut(s) 1242
EcoT14I CCWWGG 3 cut(s) 116, 224, 519
EcoT22I ATGCAT 1 cut(s) 1056
ErhI CCWWGG 3 cut(s) 116, 224, 519
Esp3I CGTCTC 2 cut(s) 1145, 1390
FaeI CATG 9 cut(s) 28, 102, 308, 441, 523, 741, 817, 1058, 1082
FaqI GGGAC 1 cut(s) 347
FatI CATG 9 cut(s) 24, 98, 304, 437, 519, 737, 813, 1054, 1078
FauI CCCGC 1 cut(s) 1117
FauNDI CATATG 1 cut(s) 1357
FbaI TGATCA 2 cut(s) 21, 316
FblI GTMKAC 2 cut(s) 471, 488
Fnu4HI GCNGC 3 cut(s) 1101, 1298, 1305
FokI GGATG 5 cut(s) 102, 538, 687, 869, 894
Fsp4HI GCNGC 3 cut(s) 1101, 1298, 1305
FspBI CTAG 1 cut(s) 392
GlaI GCGC 1 cut(s) 1320
GluI GCNGC 3 cut(s) 1101, 1298, 1305
GsaI CCCAGC 2 cut(s) 17, 762
HaeIII GGCC 6 cut(s) 36, 103, 230, 763, 903, 1300
HapII CCGG 1 cut(s) 672
HgaI GACGC 1 cut(s) 1162
HhaI GCGC 1 cut(s) 1321
Hin1II CATG 9 cut(s) 28, 102, 308, 441, 523, 741, 817, 1058, 1082
Hin6I GCGC 1 cut(s) 1319
HinP1I GCGC 1 cut(s) 1319
HindIII AAGCTT 1 cut(s) 572
HinfI GANTC 3 cut(s) 386, 660, 1172
HpaII CCGG 1 cut(s) 672
HphI GGTGA 2 cut(s) 797, 1106
Hpy166II GTNNAC 3 cut(s) 472, 489, 1114
Hpy188I TCNGA 2 cut(s) 1024, 1280
Hpy8I GTNNAC 3 cut(s) 472, 489, 1114
HpyAV CCTTC 2 cut(s) 486, 1252
HpyCH4III ACNGT 7 cut(s) 425, 469, 596, 709, 1033, 1111, 1250
HpyCH4IV ACGT 3 cut(s) 640, 1068, 1403
HpyF3I CTNAG 7 cut(s) 194, 346, 565, 852, 912, 1023, 1364
HpySE526I ACGT 3 cut(s) 640, 1068, 1403
Hsp92II CATG 9 cut(s) 28, 102, 308, 441, 523, 741, 817, 1058, 1082
HspAI GCGC 1 cut(s) 1319
Ksp22I TGATCA 2 cut(s) 21, 316
Kzo9I GATC 6 cut(s) 21, 57, 220, 316, 577, 1370
LmnI GCTCC 2 cut(s) 620, 1316
Lsp1109I GCAGC 2 cut(s) 1112, 1316
LweI GCATC 4 cut(s) 207, 1028, 1041, 1087
MaeI CTAG 1 cut(s) 392
MaeII ACGT 3 cut(s) 640, 1068, 1403
MaeIII GTNAC 4 cut(s) 121, 636, 797, 1225
MalI GATC 6 cut(s) 23, 59, 222, 318, 579, 1372
MboI GATC 6 cut(s) 21, 57, 220, 316, 577, 1370
MboII GAAGA 4 cut(s) 221, 253, 475, 1204
MfeI CAATTG 1 cut(s) 765
MhlI GDGCHC 1 cut(s) 9
Mph1103I ATGCAT 1 cut(s) 1056
MseI TTAA 5 cut(s) 845, 954, 1136, 1286, 1338
MslI CAYNNNNRTG 2 cut(s) 524, 1232
MspCI CTTAAG 1 cut(s) 1337
MspI CCGG 1 cut(s) 672
MspR9I CCNGG 1 cut(s) 1244
MunI CAATTG 1 cut(s) 765
Mva1269I GAATGC 1 cut(s) 1307
MvaI CCWGG 1 cut(s) 1244
NcoI CCATGG 1 cut(s) 519
NdeI CATATG 1 cut(s) 1357
NdeII GATC 6 cut(s) 21, 57, 220, 316, 577, 1370
NlaIII CATG 9 cut(s) 28, 102, 308, 441, 523, 741, 817, 1058, 1082
NlaIV GGNNCC 2 cut(s) 6, 631
NmuCI GTSAC 2 cut(s) 636, 1225
NsiI ATGCAT 1 cut(s) 1056
NspI RCATGY 3 cut(s) 308, 1058, 1082
NspV TTCGAA 1 cut(s) 46
PaeI GCATGC 2 cut(s) 308, 1058
PaqCI CACCTGC 1 cut(s) 253
PctI GAATGC 1 cut(s) 1307
PfeI GAWTC 3 cut(s) 386, 660, 1172
PfoI TCCNGGA 1 cut(s) 1242
PkrI GCNGC 3 cut(s) 1102, 1299, 1306
PmaCI CACGTG 1 cut(s) 641
PmlI CACGTG 1 cut(s) 641
Ppu21I YACGTR 2 cut(s) 641, 1069
Psp6I CCWGG 1 cut(s) 1242
PspCI CACGTG 1 cut(s) 641
PspFI CCCAGC 2 cut(s) 13, 758
PspGI CCWGG 1 cut(s) 1242
PspN4I GGNNCC 2 cut(s) 6, 631
PspPI GGNCC 7 cut(s) 102, 228, 630, 761, 810, 902, 1280
PstI CTGCAG 2 cut(s) 181, 1306
RsaI GTAC 5 cut(s) 378, 417, 706, 1293, 1325
RsaNI GTAC 5 cut(s) 377, 416, 705, 1292, 1324
RseI CAYNNNNRTG 2 cut(s) 524, 1232
SaqAI TTAA 5 cut(s) 845, 954, 1136, 1286, 1338
SatI GCNGC 3 cut(s) 1101, 1298, 1305
Sau3AI GATC 6 cut(s) 21, 57, 220, 316, 577, 1370
Sau96I GGNCC 7 cut(s) 102, 228, 630, 761, 810, 902, 1280
ScaI AGTACT 1 cut(s) 417
ScrFI CCNGG 1 cut(s) 1244
SduI GDGCHC 1 cut(s) 9
SfaNI GCATC 4 cut(s) 207, 1028, 1041, 1087
SfcI CTRYAG 2 cut(s) 177, 1302
SfuI TTCGAA 1 cut(s) 46
SinI GGWCC 3 cut(s) 630, 810, 1280
SmiMI CAYNNNNRTG 2 cut(s) 524, 1232
SmlI CTYRAG 2 cut(s) 1337, 1393
SmoI CTYRAG 2 cut(s) 1337, 1393
SphI GCATGC 2 cut(s) 308, 1058
SsiI CCGC 4 cut(s) 838, 998, 1124, 1297
SspMI CTAG 1 cut(s) 392
StyD4I CCNGG 1 cut(s) 1242
StyI CCWWGG 3 cut(s) 116, 224, 519
TaaI ACNGT 7 cut(s) 425, 469, 596, 709, 1033, 1111, 1250
TaiI ACGT 3 cut(s) 643, 1071, 1406
TaqI TCGA 2 cut(s) 46, 479
TatI WGTACW 5 cut(s) 376, 415, 704, 1291, 1323
TauI GCSGC 1 cut(s) 1300
TfiI GAWTC 3 cut(s) 386, 660, 1172
Tru1I TTAA 5 cut(s) 845, 954, 1136, 1286, 1338
Tru9I TTAA 5 cut(s) 845, 954, 1136, 1286, 1338
TscAI CASTG 1 cut(s) 238
TseFI GTSAC 2 cut(s) 636, 1225
TseI GCWGC 2 cut(s) 1100, 1304
Tsp45I GTSAC 2 cut(s) 636, 1225
TspDTI ATGAA 4 cut(s) 830, 873, 1215, 1344
TspGWI ACGGA 1 cut(s) 1329
TspRI CASTG 1 cut(s) 238
Vha464I CTTAAG 1 cut(s) 1337
VpaK11BI GGWCC 3 cut(s) 630, 810, 1280
XapI RAATTY 3 cut(s) 39, 860, 967
XceI RCATGY 3 cut(s) 308, 1058, 1082
XmiI GTMKAC 2 cut(s) 471, 488
XspI CTAG 1 cut(s) 392
ZrmI AGTACT 1 cut(s) 417
Zsp2I ATGCAT 1 cut(s) 1056
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.