RLG00000004070

FAD-dependent monooxygenase required for the C5-ring hydroxylation during ubiquinone biosynthesis. Catalyzes the hydroxylation of 3-polyprenyl-4-hydroxybenzoic acid to 3- polyprenyl-4,5-dihydroxybenzoic acid. The electrons required for the hydroxylation reaction may be funneled indirectly from NADPH via a ferredoxin ferredoxin reductase system to COQ6

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
55850061 .. 55854333
4273 bp
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UTR
Exon/CDS
Intron
RLM00000004070

Sequence Viewer

Length: 1530 bp
ATGAACAGCTTGATCAGAAGAAAGCTCGTCGAAAATGCATACAGATTGAAACTTTCACACAAGGGTTTCTGTACTGGTGCAGCTGCTAAAGTTTCCAGCTCCAATGGTGCCCAACCAAGCAATGATCATGTGGGGCAGCAGAAATCTTCAAATAAAAGCGAACCGTATGACATTGCTATTGTTGGAGGAGGCATGGTTGGCATGGCCCTAGCTTGTTCCTTGGCTAGAATGCCGATGACAAAGCACCTGAAGGTGGCCATTATTGATAGCAATCCTGCATTATCTAATGGACTCTCAATCAAGAAAGAAGACCCCCCTGATGCAAGGGTCAGTACAGTAACACCTGCAACCATATCTCTCTTCAAAGATATTGGCGCTTGGAAATATGTTGAACAGCATCGACATGCATATTTTGATCAAATGCAGGTTTGGGACTATACTGGCTTAGGATATACGAGATATGATGCTAGAGATGTACATAAAGAATATCTGGGGTGTGTAGTGGAGAATAAAGTGCTGCAGAGTTCTCTTTTGTCATGCATGCAGGATACAGATTTCCAGAAGACTATTTACCCTTCCAGATTATCCTCAATGCCTTTAAATCCAAGCATTCTATCTGTGGGGATGAACAGCACATCATCTGGGTTGAATGAGCGTGGAAACTTAGCAAAACTGGATCTAAGTGATGGCAATAGTTTATATGCAAAGTTGGTGGTGGGAGCTGATGGGTCCAAGTCACGTGTTAGGGAGTTGGCAGGATTTAAGACGACTGGATGGAAGTACTCACAGAATGCAATCATTTGCACAGTAGAGCATCATGCAGAAAATCGATGTGCATGGCAAAGATTTCTACCTACCGGACCAATTGCACTTTTGCCTGTTGGTGATAATTTTAGTAACATTGTTTGGACAATGAACCCGGAAGAAGCAACTGACCGTAAATCAATGGTCGAGGATGATTTTGTGAAAGCTGTAAATTATGCTCTTGATTATGGATTTGGCCCTCATCCTAAGTTGAGCAACTTCGGAAGTGGAGGCATTTTTTCTTGGTTTAAGACAGACACAACTATTTCTGCCAATGAGTGCTTCAAAGTTCCACCGAAAGTGATGAAGTTGGCATCTGAAAGAATGGTGTTTCCCTTGTCTTTGATGCATGCCAATAACTATGTGTCAAAGCATGTGGTTCTAATTGGCGATGCAGCACACACTGTTCACCCTTTGGCTGGGCAAGGAGTTAATCTGGGTTTTGGAGATGCATTTGCTCTTTCAAGAATCATTTCTGAGGGCATTGCAGTGGGAACAGGTATTTCTGAGGTCAATTTGTTGAAGAAATATGAAGCAGAGAGGAGAACGGCTAATGTCACAATGATGGCAATCCTAGATGGTTTCCAAAGGGCTTACTCAGTTGATTTTGGACCTTTAAATGTTCTACGCGCTGCTGCATTCCACGGAGCACAGTACATTCCACCCCTTAAAAGGAGTATAATCTCATATGCATCAGGGGATCAGAGATTGCCAATATTCGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

510

Amino Acids

55.66

Weight (kDa)

9.0

Isoelectric Point (pI)

30.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 57 - 324 4.8e-07 FAD binding domain
FAD_binding_3 PF01494 377 - 452 1.1e-12 FAD binding domain
SE PF08491 378 - 483 1.5e-06 Squalene epoxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011500)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 352
Acc36I ACCTGC 2 cut(s) 352, 415
AccB1I GGYRCC 1 cut(s) 107
AccII CGCG 1 cut(s) 1434
AclWI GGATC 2 cut(s) 684, 1512
AcoI YGGCCR 1 cut(s) 255
AcuI CTGAAG 1 cut(s) 269
AcvI CACGTG 1 cut(s) 740
AfaI GTAC 5 cut(s) 73, 334, 477, 782, 1460
AfiI CCNNNNNNNGG 3 cut(s) 253, 1223, 1476
AflIII ACRYGT 1 cut(s) 739
AgsI TTSAA 8 cut(s) 49, 150, 364, 392, 649, 1090, 1269, 1327
AjuI GAANNNNNNNTTGG 2 cut(s) 1070, 1102
AluBI AGCT 7 cut(s) 9, 25, 83, 99, 212, 722, 971
AluI AGCT 7 cut(s) 9, 25, 83, 99, 212, 722, 971
Alw21I GWGCWC 1 cut(s) 1456
AlwI GGATC 2 cut(s) 684, 1512
AoxI GGCC 3 cut(s) 204, 255, 1000
ApeKI GCWGC 7 cut(s) 80, 83, 136, 517, 1199, 1436, 1439
Asp700I GAANNNNTTC 1 cut(s) 1276
AspLEI GCGC 2 cut(s) 377, 1436
AspS9I GGNCC 5 cut(s) 205, 729, 860, 1001, 1415
AsuC2I CCSGG 1 cut(s) 920
AsuHPI GGTGA 2 cut(s) 896, 1205
AvaII GGWCC 3 cut(s) 729, 860, 1415
BaeGI GKGCMC 1 cut(s) 112
BalI TGGCCA 1 cut(s) 257
BanI GGYRCC 1 cut(s) 107
BarI GAAGNNNNNNTAC 2 cut(s) 554, 586
BbrPI CACGTG 1 cut(s) 740
BbsI GAAGAC 2 cut(s) 315, 569
Bbv12I GWGCWC 1 cut(s) 1456
BbvI GCAGC 7 cut(s) 70, 92, 148, 504, 1211, 1423, 1426
BccI CCATC 5 cut(s) 680, 719, 768, 1363, 1376
BceAI ACGGC 1 cut(s) 1368
BciVI GTATCC 1 cut(s) 541
BclI TGATCA 3 cut(s) 12, 124, 415
BcnI CCSGG 1 cut(s) 920
BfaI CTAG 4 cut(s) 209, 225, 468, 1379
BfmI CTRYAG 1 cut(s) 518
BfoI RGCGCY 1 cut(s) 378
BfuAI ACCTGC 2 cut(s) 352, 415
BfuI GTATCC 1 cut(s) 541
BisI GCNGC 7 cut(s) 81, 84, 137, 518, 1200, 1437, 1440
BlsI GCNGC 7 cut(s) 82, 85, 138, 519, 1201, 1438, 1441
BmcAI AGTACT 1 cut(s) 782
Bme1390I CCNGG 1 cut(s) 920
Bme18I GGWCC 3 cut(s) 729, 860, 1415
BmgT120I GGNCC 5 cut(s) 205, 729, 860, 1001, 1415
BmiI GGNNCC 2 cut(s) 109, 730
BmrFI CCNGG 1 cut(s) 920
BmsI GCATC 9 cut(s) 310, 406, 454, 823, 1127, 1140, 1186, 1243, 1505
BpiI GAAGAC 2 cut(s) 315, 569
Bpu10I CCTNAGC 1 cut(s) 445
BpuMI CCSGG 1 cut(s) 920
Bsa29I ATCGAT 1 cut(s) 829
BsaAI YACGTR 1 cut(s) 740
BsaBI GATNNNNATC 2 cut(s) 270, 1373
BsaJI CCNNGG 2 cut(s) 219, 1447
BsaWI WCCGGW 1 cut(s) 857
BsaXI ACNNNNNCTCC 2 cut(s) 180, 210
Bsc4I CCNNNNNNNGG 3 cut(s) 253, 1223, 1476
Bse1I ACTGG 4 cut(s) 79, 445, 678, 775
Bse3DI GCAATG 3 cut(s) 127, 171, 1287
Bse8I GATNNNNATC 2 cut(s) 270, 1373
BseCI ATCGAT 1 cut(s) 829
BseDI CCNNGG 2 cut(s) 219, 1447
BseGI GGATG 4 cut(s) 630, 779, 961, 1006
BseJI GATNNNNATC 2 cut(s) 270, 1373
BseLI CCNNNNNNNGG 3 cut(s) 253, 1223, 1476
BseMI GCAATG 3 cut(s) 127, 171, 1287
BseMII CTCAG 3 cut(s) 1272, 1302, 1416
BseNI ACTGG 4 cut(s) 79, 445, 678, 775
BseRI GAGGAG 2 cut(s) 201, 1360
BseSI GKGCMC 1 cut(s) 112
BseXI GCAGC 7 cut(s) 70, 92, 148, 504, 1211, 1423, 1426
BseYI CCCAGC 1 cut(s) 1223
BsgI GTGCAG 1 cut(s) 99
Bsh1236I CGCG 1 cut(s) 1434
BshFI GGCC 3 cut(s) 206, 257, 1002
BshNI GGYRCC 1 cut(s) 107
BshVI ATCGAT 1 cut(s) 829
BsiHKAI GWGCWC 1 cut(s) 1456
BsiSI CCGG 2 cut(s) 858, 920
BslFI GGGAC 1 cut(s) 446
BslI CCNNNNNNNGG 3 cut(s) 253, 1223, 1476
BsmFI GGGAC 1 cut(s) 446
BsmI GAATGC 4 cut(s) 234, 609, 796, 1442
BsnI GGCC 3 cut(s) 206, 257, 1002
Bsp1286I GDGCHC 2 cut(s) 112, 1456
Bsp1407I TGTACA 1 cut(s) 475
Bsp143I GATC 5 cut(s) 12, 124, 415, 676, 1504
BspANI GGCC 3 cut(s) 206, 257, 1002
BspCNI CTCAG 3 cut(s) 1273, 1303, 1415
BspDI ATCGAT 1 cut(s) 829
BspFNI CGCG 1 cut(s) 1434
BspLI GGNNCC 2 cut(s) 109, 730
BspMAI CTGCAG 1 cut(s) 522
BspMI ACCTGC 2 cut(s) 352, 415
BspPI GGATC 2 cut(s) 684, 1512
BspT107I GGYRCC 1 cut(s) 107
BsrDI GCAATG 3 cut(s) 127, 171, 1287
BsrGI TGTACA 1 cut(s) 475
BsrI ACTGG 4 cut(s) 79, 445, 678, 775
BssECI CCNNGG 2 cut(s) 219, 1447
BssMI GATC 5 cut(s) 12, 124, 415, 676, 1504
BssT1I CCWWGG 1 cut(s) 219
Bst4CI ACNGT 6 cut(s) 165, 337, 808, 938, 1210, 1458
Bst6I CTCTTC 1 cut(s) 365
BstAUI TGTACA 1 cut(s) 475
BstBAI YACGTR 1 cut(s) 740
BstC8I GCNNGC 2 cut(s) 542, 1155
BstDEI CTNAG 7 cut(s) 445, 664, 680, 1011, 1281, 1311, 1402
BstDSI CCRYGG 1 cut(s) 1447
BstF5I GGATG 4 cut(s) 630, 779, 961, 1006
BstFNI CGCG 1 cut(s) 1434
BstH2I RGCGCY 1 cut(s) 378
BstHHI GCGC 2 cut(s) 377, 1436
BstKTI GATC 5 cut(s) 15, 127, 418, 679, 1507
BstMBI GATC 5 cut(s) 12, 124, 415, 676, 1504
BstMWI GCNNNNNNNGC 1 cut(s) 198
BstNSI RCATGY 4 cut(s) 407, 544, 1157, 1181
BstSCI CCNGG 1 cut(s) 918
BstSFI CTRYAG 1 cut(s) 518
BstSLI GKGCMC 1 cut(s) 112
BstUI CGCG 1 cut(s) 1434
BstV1I GCAGC 7 cut(s) 70, 92, 148, 504, 1211, 1423, 1426
BstV2I GAAGAC 2 cut(s) 315, 569
BstX2I RGATCY 1 cut(s) 676
BstYI RGATCY 1 cut(s) 676
Bsu15I ATCGAT 1 cut(s) 829
BsuI GTATCC 1 cut(s) 541
BsuRI GGCC 3 cut(s) 206, 257, 1002
BsuTUI ATCGAT 1 cut(s) 829
BtgI CCRYGG 1 cut(s) 1447
BtgZI GCGATG 1 cut(s) 1209
BtsCI GGATG 4 cut(s) 630, 779, 961, 1006
BtsI GCAGTG 1 cut(s) 1299
BtsIMutI CAGTG 2 cut(s) 1206, 1299
BveI ACCTGC 2 cut(s) 352, 415
Cac8I GCNNGC 2 cut(s) 542, 1155
CfoI GCGC 2 cut(s) 377, 1436
Cfr13I GGNCC 5 cut(s) 205, 729, 860, 1001, 1415
ClaI ATCGAT 1 cut(s) 829
Csp6I GTAC 5 cut(s) 72, 333, 476, 781, 1459
CspCI CAANNNNNGTGG 4 cut(s) 693, 728, 1161, 1196
CviQI GTAC 5 cut(s) 72, 333, 476, 781, 1459
DdeI CTNAG 7 cut(s) 445, 664, 680, 1011, 1281, 1311, 1402
DpnI GATC 5 cut(s) 14, 126, 417, 678, 1506
DpnII GATC 5 cut(s) 12, 124, 415, 676, 1504
DraI TTTAAA 2 cut(s) 600, 1422
EaeI YGGCCR 1 cut(s) 255
Eam1104I CTCTTC 1 cut(s) 365
EarI CTCTTC 1 cut(s) 365
Eco130I CCWWGG 1 cut(s) 219
Eco47I GGWCC 3 cut(s) 729, 860, 1415
Eco57I CTGAAG 1 cut(s) 269
Eco72I CACGTG 1 cut(s) 740
EcoT14I CCWWGG 1 cut(s) 219
EcoT22I ATGCAT 6 cut(s) 40, 409, 542, 1155, 1258, 1498
ErhI CCWWGG 1 cut(s) 219
FaqI GGGAC 1 cut(s) 446
FauNDI CATATG 1 cut(s) 1492
FbaI TGATCA 3 cut(s) 12, 124, 415
Fnu4HI GCNGC 7 cut(s) 81, 84, 137, 518, 1200, 1437, 1440
FokI GGATG 4 cut(s) 637, 786, 968, 993
Fsp4HI GCNGC 7 cut(s) 81, 84, 137, 518, 1200, 1437, 1440
FspBI CTAG 4 cut(s) 209, 225, 468, 1379
GlaI GCGC 2 cut(s) 376, 1435
GluI GCNGC 7 cut(s) 81, 84, 137, 518, 1200, 1437, 1440
GsaI CCCAGC 1 cut(s) 1227
HaeII RGCGCY 1 cut(s) 378
HaeIII GGCC 3 cut(s) 206, 257, 1002
HapII CCGG 2 cut(s) 858, 920
HhaI GCGC 2 cut(s) 377, 1436
Hin6I GCGC 2 cut(s) 375, 1434
HinP1I GCGC 2 cut(s) 375, 1434
HinfI GANTC 2 cut(s) 291, 1272
HpaII CCGG 2 cut(s) 858, 920
HphI GGTGA 2 cut(s) 896, 1205
Hpy166II GTNNAC 1 cut(s) 1213
Hpy188I TCNGA 6 cut(s) 17, 1028, 1123, 1282, 1312, 1509
Hpy188III TCNNGA 5 cut(s) 301, 559, 579, 986, 1269
Hpy8I GTNNAC 1 cut(s) 1213
Hpy99I CGWCG 1 cut(s) 32
HpyAV CCTTC 2 cut(s) 244, 585
HpyCH4III ACNGT 6 cut(s) 165, 337, 808, 938, 1210, 1458
HpyCH4IV ACGT 1 cut(s) 739
HpyF10VI GCNNNNNNNGC 1 cut(s) 198
HpyF3I CTNAG 7 cut(s) 445, 664, 680, 1011, 1281, 1311, 1402
HpySE526I ACGT 1 cut(s) 739
HspAI GCGC 2 cut(s) 375, 1434
Ksp22I TGATCA 3 cut(s) 12, 124, 415
Kzo9I GATC 5 cut(s) 12, 124, 415, 676, 1504
LmnI GCTCC 3 cut(s) 104, 719, 1451
Lsp1109I GCAGC 7 cut(s) 70, 92, 148, 504, 1211, 1423, 1426
LweI GCATC 9 cut(s) 310, 406, 454, 823, 1127, 1140, 1186, 1243, 1505
MaeI CTAG 4 cut(s) 209, 225, 468, 1379
MaeII ACGT 1 cut(s) 739
MaeIII GTNAC 4 cut(s) 337, 735, 896, 1360
MalI GATC 5 cut(s) 14, 126, 417, 678, 1506
MboI GATC 5 cut(s) 12, 124, 415, 676, 1504
MboII GAAGA 7 cut(s) 30, 138, 320, 352, 574, 935, 1339
MfeI CAATTG 1 cut(s) 864
MflI RGATCY 1 cut(s) 676
MhlI GDGCHC 2 cut(s) 112, 1456
MlsI TGGCCA 1 cut(s) 257
MluCI AATT 5 cut(s) 864, 889, 976, 1188, 1318
MluNI TGGCCA 1 cut(s) 257
MlyI GAGTC 1 cut(s) 285
MmeI TCCRAC 1 cut(s) 163
MnlI CCTC 9 cut(s) 179, 182, 598, 946, 1014, 1028, 1276, 1306, 1338
Mox20I TGGCCA 1 cut(s) 257
Mph1103I ATGCAT 6 cut(s) 40, 409, 542, 1155, 1258, 1498
MroXI GAANNNNTTC 1 cut(s) 1276
MscI TGGCCA 1 cut(s) 257
MseI TTAA 6 cut(s) 599, 762, 1053, 1236, 1421, 1473
MslI CAYNNNNRTG 3 cut(s) 402, 1292, 1367
Msp20I TGGCCA 1 cut(s) 257
MspA1I CMGCKG 1 cut(s) 83
MspI CCGG 2 cut(s) 858, 920
MspR9I CCNGG 1 cut(s) 920
MunI CAATTG 1 cut(s) 864
Mva1269I GAATGC 4 cut(s) 234, 609, 796, 1442
MvnI CGCG 1 cut(s) 1434
MwoI GCNNNNNNNGC 1 cut(s) 198
NciI CCSGG 1 cut(s) 920
NdeI CATATG 1 cut(s) 1492
NdeII GATC 5 cut(s) 12, 124, 415, 676, 1504
NlaIV GGNNCC 2 cut(s) 109, 730
NmuCI GTSAC 2 cut(s) 735, 1360
NsiI ATGCAT 6 cut(s) 40, 409, 542, 1155, 1258, 1498
NspI RCATGY 4 cut(s) 407, 544, 1157, 1181
PaeI GCATGC 2 cut(s) 544, 1157
PaqCI CACCTGC 1 cut(s) 352
PctI GAATGC 4 cut(s) 234, 609, 796, 1442
PdmI GAANNNNTTC 1 cut(s) 1276
PfeI GAWTC 1 cut(s) 1272
PkrI GCNGC 7 cut(s) 82, 85, 138, 519, 1201, 1438, 1441
PleI GAGTC 1 cut(s) 285
PmaCI CACGTG 1 cut(s) 740
PmlI CACGTG 1 cut(s) 740
PpsI GAGTC 1 cut(s) 285
Ppu21I YACGTR 1 cut(s) 740
PspCI CACGTG 1 cut(s) 740
PspFI CCCAGC 1 cut(s) 1223
PspN4I GGNNCC 2 cut(s) 109, 730
PspPI GGNCC 5 cut(s) 205, 729, 860, 1001, 1415
PstI CTGCAG 1 cut(s) 522
PsuI RGATCY 1 cut(s) 676
PvuII CAGCTG 1 cut(s) 83
RsaI GTAC 5 cut(s) 73, 334, 477, 782, 1460
RsaNI GTAC 5 cut(s) 72, 333, 476, 781, 1459
RseI CAYNNNNRTG 3 cut(s) 402, 1292, 1367
SaqAI TTAA 6 cut(s) 599, 762, 1053, 1236, 1421, 1473
SatI GCNGC 7 cut(s) 81, 84, 137, 518, 1200, 1437, 1440
Sau3AI GATC 5 cut(s) 12, 124, 415, 676, 1504
Sau96I GGNCC 5 cut(s) 205, 729, 860, 1001, 1415
ScaI AGTACT 1 cut(s) 782
SchI GAGTC 1 cut(s) 285
ScrFI CCNGG 1 cut(s) 920
SduI GDGCHC 2 cut(s) 112, 1456
SfaNI GCATC 9 cut(s) 310, 406, 454, 823, 1127, 1140, 1186, 1243, 1505
SfcI CTRYAG 1 cut(s) 518
SinI GGWCC 3 cut(s) 729, 860, 1415
SmiMI CAYNNNNRTG 3 cut(s) 402, 1292, 1367
SphI GCATGC 2 cut(s) 544, 1157
Sse9I AATT 5 cut(s) 864, 889, 976, 1188, 1318
SspI AATATT 1 cut(s) 1521
SspMI CTAG 4 cut(s) 209, 225, 468, 1379
StyD4I CCNGG 1 cut(s) 918
StyI CCWWGG 1 cut(s) 219
TaaI ACNGT 6 cut(s) 165, 337, 808, 938, 1210, 1458
TaiI ACGT 1 cut(s) 742
TaqI TCGA 4 cut(s) 30, 400, 829, 951
TasI AATT 5 cut(s) 864, 889, 976, 1188, 1318
TatI WGTACW 5 cut(s) 71, 332, 475, 780, 1458
TfiI GAWTC 1 cut(s) 1272
Tru1I TTAA 6 cut(s) 599, 762, 1053, 1236, 1421, 1473
Tru9I TTAA 6 cut(s) 599, 762, 1053, 1236, 1421, 1473
TscAI CASTG 2 cut(s) 1213, 1299
TseFI GTSAC 2 cut(s) 735, 1360
TseI GCWGC 7 cut(s) 80, 83, 136, 517, 1199, 1436, 1439
Tsp45I GTSAC 2 cut(s) 735, 1360
TspDTI ATGAA 5 cut(s) 17, 641, 929, 1124, 1350
TspGWI ACGGA 1 cut(s) 1464
TspRI CASTG 2 cut(s) 1213, 1299
VpaK11BI GGWCC 3 cut(s) 729, 860, 1415
XceI RCATGY 4 cut(s) 407, 544, 1157, 1181
XmnI GAANNNNTTC 1 cut(s) 1276
XspI CTAG 4 cut(s) 209, 225, 468, 1379
ZrmI AGTACT 1 cut(s) 782
Zsp2I ATGCAT 6 cut(s) 40, 409, 542, 1155, 1258, 1498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.