Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0009501

Physical Location & Seq

Genomic Coordinates Forward (+)

30268111 .. 30269162

Gene Structure 1052 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1220900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGCGATGATTCCAATCGTTGAGCCGGTGTATATCGGTTTGGTCTCCTCGGACCGGGGAAATTCTACCCCTTCAACCAAACCCAGAAAGAAGACTATGACATCGGTTTATCTCAAGTTTTTCGAGACGGCTTCTGACGAAAAAAGCCGCCGGTGCAAGTTTTGTGGACAAAGCTATTCCATTGCAACTGCCACTGGTAAACTTCTTTGTCCCCTCAATGTAGTTGCTTGTGGTAGTTCATTTTTCCTTGTCGTTGAAGGTAATCTGGGAAGGCATCTAAGTAATCGCCATCCCGGTTATGATACGTCCGGCGATGTTGTCACCAGTCCTGCACCACAACCCGCCACTGTATACCGGAAACCTCAACCTCAATCTCAATCAAAAGCATCACAAATGGATTACAAACCAGGAGTATGCAGGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4413 Dimer_Tnp_hAT zf-BED

Protein Analysis

142

Amino Acids

15.37

Weight (kDa)

9.61

Isoelectric Point (pI)

44.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18560
fragaria_vesca	FvH4_5g12801 FvH4_5g12801 FvH4_5g12801 FvH4_5g12801 FvH4_5g12801
malus_domestica	MD06G1210000.v1.1 MD14G1220900.v1.1
prunus_persica	Prupe.5G216200_v2.0.a1 Prupe.5G216200_v2.0.a1
pyrus_communis	pycom06g18760 pycom06g18770 pycom14g18280
rosa_chinensis	RchiOBHm_Chr7g0184431
rosa_multiflora	Rmu_sc0038166.1_g000001 Rmu_sc0039138.1_g000001
rosa_roxburghii	Rroxscaffold_3G00269620
rosa_samantha	Rh7AG080000 Rh7BG067200 Rh7CG067500 Rh7DG067200
rosa_wichuraiana	Rw7G005530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	351
AciI	CCGC	2 cut(s)	148, 342
AcsI	RAATTY	1 cut(s)	61
AfiI	CCNNNNNNNGG	1 cut(s)	54
AgsI	TTSAA	2 cut(s)	75, 257
AjnI	CCWGG	1 cut(s)	406
AluBI	AGCT	1 cut(s)	174
AluI	AGCT	1 cut(s)	174
Alw26I	GTCTC	2 cut(s)	49, 119
ApoI	RAATTY	1 cut(s)	61
AspS9I	GGNCC	1 cut(s)	52
AsuC2I	CCSGG	2 cut(s)	56, 294
AsuHPI	GGTGA	1 cut(s)	313
AvaII	GGWCC	1 cut(s)	52
BbsI	GAAGAC	1 cut(s)	98
BccI	CCATC	1 cut(s)	297
BceAI	ACGGC	1 cut(s)	144
BciT130I	CCWGG	1 cut(s)	408
BcnI	CCSGG	2 cut(s)	56, 294
BcoDI	GTCTC	2 cut(s)	49, 119
BisI	GCNGC	1 cut(s)	148
BlsI	GCNGC	1 cut(s)	149
Bme1390I	CCNGG	3 cut(s)	56, 294, 408
Bme18I	GGWCC	1 cut(s)	52
BmgT120I	GGNCC	1 cut(s)	52
BmrFI	CCNGG	3 cut(s)	56, 294, 408
BmsI	GCATC	2 cut(s)	283, 395
BpiI	GAAGAC	1 cut(s)	98
BpuEI	CTTGAG	1 cut(s)	98
BpuMI	CCSGG	2 cut(s)	56, 294
BsaBI	GATNNNNATC	1 cut(s)	14
BsaI	GGTCTC	1 cut(s)	49
BsaJI	CCNNGG	2 cut(s)	48, 55
BsaWI	WCCGGW	1 cut(s)	354
Bsc4I	CCNNNNNNNGG	1 cut(s)	54
Bse118I	RCCGGY	2 cut(s)	25, 150
Bse1I	ACTGG	2 cut(s)	199, 324
Bse3DI	GCAATG	1 cut(s)	180
Bse8I	GATNNNNATC	1 cut(s)	14
BseBI	CCWGG	1 cut(s)	408
BseDI	CCNNGG	2 cut(s)	48, 55
BseGI	GGATG	1 cut(s)	289
BseJI	GATNNNNATC	1 cut(s)	14
BseLI	CCNNNNNNNGG	1 cut(s)	54
BseMI	GCAATG	1 cut(s)	180
BseNI	ACTGG	2 cut(s)	199, 324
BseRI	GAGGAG	1 cut(s)	37
BsgI	GTGCAG	1 cut(s)	315
BsiSI	CCGG	6 cut(s)	26, 55, 151, 294, 309, 355
BslFI	GGGAC	1 cut(s)	195
BslI	CCNNNNNNNGG	1 cut(s)	54
BsmAI	GTCTC	2 cut(s)	49, 119
BsmBI	CGTCTC	1 cut(s)	119
BsmFI	GGGAC	1 cut(s)	195
Bso31I	GGTCTC	1 cut(s)	49
BspACI	CCGC	2 cut(s)	148, 342
BspTNI	GGTCTC	1 cut(s)	49
BsrDI	GCAATG	1 cut(s)	180
BsrFI	RCCGGY	2 cut(s)	25, 150
BsrI	ACTGG	2 cut(s)	199, 324
BssAI	RCCGGY	2 cut(s)	25, 150
BssECI	CCNNGG	2 cut(s)	48, 55
BssNAI	GTATAC	1 cut(s)	352
Bst1107I	GTATAC	1 cut(s)	352
Bst2UI	CCWGG	1 cut(s)	408
Bst4CI	ACNGT	1 cut(s)	349
BstDEI	CTNAG	1 cut(s)	278
BstF5I	GGATG	1 cut(s)	289
BstMAI	GTCTC	2 cut(s)	49, 119
BstMWI	GCNNNNNNNGC	1 cut(s)	153
BstNI	CCWGG	1 cut(s)	408
BstSCI	CCNGG	3 cut(s)	54, 292, 406
BstV2I	GAAGAC	1 cut(s)	98
BstZ17I	GTATAC	1 cut(s)	352
BtgZI	GCGATG	2 cut(s)	20, 327
BtsCI	GGATG	1 cut(s)	289
BtsIMutI	CAGTG	2 cut(s)	192, 345
Cfr10I	RCCGGY	2 cut(s)	25, 150
Cfr13I	GGNCC	1 cut(s)	52
CpoI	CGGWCCG	1 cut(s)	52
CspCI	CAANNNNNGTGG	2 cut(s)	145, 180
CspI	CGGWCCG	1 cut(s)	52
CviJI	RGCY	4 cut(s)	25, 131, 147, 174
CviKI_1	RGCY	4 cut(s)	25, 131, 147, 174
DdeI	CTNAG	1 cut(s)	278
Eco31I	GGTCTC	1 cut(s)	49
Eco47I	GGWCC	1 cut(s)	52
EcoRII	CCWGG	1 cut(s)	406
Esp3I	CGTCTC	1 cut(s)	119
FaiI	YATR	5 cut(s)	33, 98, 300, 352, 415
FaqI	GGGAC	1 cut(s)	195
FauI	CCCGC	1 cut(s)	349
FblI	GTMKAC	1 cut(s)	351
Fnu4HI	GCNGC	1 cut(s)	148
FokI	GGATG	1 cut(s)	276
Fsp4HI	GCNGC	1 cut(s)	148
GluI	GCNGC	1 cut(s)	148
HapII	CCGG	6 cut(s)	26, 55, 151, 294, 309, 355
HinfI	GANTC	1 cut(s)	10
HpaII	CCGG	6 cut(s)	26, 55, 151, 294, 309, 355
HphI	GGTGA	1 cut(s)	313
Hpy166II	GTNNAC	3 cut(s)	167, 200, 352
Hpy188I	TCNGA	2 cut(s)	52, 136
Hpy188III	TCNNGA	1 cut(s)	124
Hpy8I	GTNNAC	3 cut(s)	167, 200, 352
HpyAV	CCTTC	3 cut(s)	81, 251, 264
HpyCH4III	ACNGT	1 cut(s)	349
HpyCH4IV	ACGT	1 cut(s)	305
HpyCH4V	TGCA	4 cut(s)	156, 185, 332, 417
HpyF10VI	GCNNNNNNNGC	1 cut(s)	153
HpyF3I	CTNAG	1 cut(s)	278
HpySE526I	ACGT	1 cut(s)	305
LweI	GCATC	2 cut(s)	283, 395
MaeII	ACGT	1 cut(s)	305
MaeIII	GTNAC	1 cut(s)	319
MboII	GAAGA	1 cut(s)	103
MluCI	AATT	1 cut(s)	61
MnlI	CCTC	4 cut(s)	58, 224, 372, 378
MspI	CCGG	6 cut(s)	26, 55, 151, 294, 309, 355
MspR9I	CCNGG	3 cut(s)	56, 294, 408
MvaI	CCWGG	1 cut(s)	408
MwoI	GCNNNNNNNGC	1 cut(s)	153
NciI	CCSGG	2 cut(s)	56, 294
NmuCI	GTSAC	1 cut(s)	319
PfeI	GAWTC	1 cut(s)	10
PkrI	GCNGC	1 cut(s)	149
Psp6I	CCWGG	1 cut(s)	406
PspGI	CCWGG	1 cut(s)	406
PspPI	GGNCC	1 cut(s)	52
Rsr2I	CGGWCCG	1 cut(s)	52
RsrII	CGGWCCG	1 cut(s)	52
SatI	GCNGC	1 cut(s)	148
Sau96I	GGNCC	1 cut(s)	52
ScrFI	CCNGG	3 cut(s)	56, 294, 408
SetI	ASST	5 cut(s)	176, 262, 308, 364, 370
SfaNI	GCATC	2 cut(s)	283, 395
SgrAI	CRCCGGYG	1 cut(s)	150
SinI	GGWCC	1 cut(s)	52
SmlI	CTYRAG	1 cut(s)	113
SmoI	CTYRAG	1 cut(s)	113
Sse9I	AATT	1 cut(s)	61
SsiI	CCGC	2 cut(s)	148, 342
StyD4I	CCNGG	3 cut(s)	54, 292, 406
TaaI	ACNGT	1 cut(s)	349
TaiI	ACGT	1 cut(s)	308
TaqI	TCGA	1 cut(s)	123
TasI	AATT	1 cut(s)	61
TauI	GCSGC	1 cut(s)	150
TfiI	GAWTC	1 cut(s)	10
TscAI	CASTG	2 cut(s)	199, 352
TseFI	GTSAC	1 cut(s)	319
Tsp45I	GTSAC	1 cut(s)	319
TspDTI	ATGAA	1 cut(s)	228
TspRI	CASTG	2 cut(s)	199, 352
VpaK11BI	GGWCC	1 cut(s)	52
XapI	RAATTY	1 cut(s)	61
XmiI	GTMKAC	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.