Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0009501

Physical Location & Seq

Genomic Coordinates Forward (+)

4640301 .. 4643268

Gene Structure 2968 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G005530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2040 bp

ATGGACTGGGCTGCAAGTAACGCCTTCAAAAATTTCAAAGATGTGGAACCCAAGTCCATGATGGAAATGGGAATCATTCCGCACATTGATGCAGGTGATATTGGTTTGGGGTCCTCAGACAAGGGGAACGCTGCTACTCCTCCTCCTTCAACAAAACCGAGAAAGAAGACCATGACGTCCGTTTATCTCAAGTTTTTCGAGACAGCTCCGGATGGAAAAAGCCGCCGGTGCAAGTTCTGTGGACAAAGCTATTCCATTGCTACTGCCACTGGCAATCTGGGGAGGCACCTAGGTAATCGGCATCCAGGGTATGATAAGTCGGGGGATGTTGTTACTGTTTCCAATCCTTCACCACAGCCCATCACTGTAGTCAGGAAGCATCAATCTCAAGCAAAAGCATCTCAAGTGGATTATGAACATTTAAATTGGCTGCTCGTTAAATGGCTTGCTTTAGCTTCGCTCCCTCCTTCAACCTTGGAAGAAATGTGGCTCGCCAACTCTTTTAAGTTTTTGAACCCGTCAATACAGCTCTGGCCGACCGAGGATTACAAGAAAATATTTCGTGATGTTCTCAGGAGTATGCAGGAAGTAGTAAGAGCATCTATGGAAAACGTTTCTTCAAAGCTCTCAATCACACTTGACTTTTGGACTTCTTATGAAAGGATTTTTTATATGAGTGTCACCTGTCACTGGATTGACGACAACTGGTCTTTCCAAAAGGCAATGCTTGATGTTTGTCACATTCCTTTCCCTTGTGGGGTTGTCGAGATCTACAACTCTCTAGTGAAGGTTCTTAGGTTGTACAACATTGAGACTAGAATACTCTCCTGCACCCATGATAACAGTCAAAGTGCCTTACAGAACTTGGATGGTCAGAATGTGGGGCACTTCTGTTATATCCCCTGTTCTGCTCACACTTTGAGCTTGATCATAGATGATGGATTGAGAACCATAGAACAAGTGATCGCTAAGATCAGAGAGTTTGTATTATGTTTAAATGCATCATCAGAGATCTCAGAGGAATTTACTCAATTGACTGCAGCTTACCACGAAGGCACTTGGAAAATTCCACTTGATGCCTCAACACGGTGGAGTGGCAACTATCAGATGCTTGATATTGTATGCAAGGCTTCTAAGTCCATGGATGCTGTTATCAGGAAGTATGAGATACTAGGCAATAGAATGCTGCTGAGCTCTGTGGAGAAGAATGCAGTCAATAATGTGCATCGATATCTAGAACCCTTCTACAAAACCACAAACAACATGTGCACAAACAAGGTGCCCACAGTGGGGCTGGTTCTCTTCTTCATGGATCACATTTCTGAGACGATTGCTACTTGCAGAGATTCTCACCTTTATCCAGAGTTGAAGAATGCTGCTGAAGACATGGCTAAAAAGGTTAGAAACTACAATAGCCAGGTCTGCAACATATTTACCTACATGACAGCAATTCTTGATCCTCGAATTAAAGGAGAGCTAATTCCTGAGAGCCTTAATTCAGACAATTTTCTTGAGGAAGCGAGAACCCATTTCATTAGAAACTATTCTATCAATCATTTCCCATCCATGACCGGTGGATACAGCAATCAAGAAATAGAGGAGGGAGGTAATGTCTCTTTTGCTGAGGAAATTGCCCGAAAGAAAAGAAGGGCAAACACGAACAATTCCAGTGATGAGCTCACTCAATATCTGTCAGAGCCTCCAGCTCCATTAGCAACAGATGTTCTCGAGTGGTGGAAGGTCAATAGTATGCGCTACCCGCGACTTTCTGTAATGGCTCGGGATTTCTTGGCTGTGCAGGCAAATTCAGTGGCACCAGAAGAACTGTTCTGTGGCAAAGGTGCTGAAATTGATAAGCAGCGATTCTGCATGCCACATGATACCACACAAGCTCTCCTTTGCATAAGGTCATGGTTACAAAGCGGGATGAAGTTGAAGTACAAGACAACCGAAATAGATTTTGAGCGTCTGATGGAATTGGCAACTAGTGCTGATAATCATAGTAGTAATGCTGGTTCGGAGAAGAAACAAAGACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4413 Dimer_Tnp_hAT zf-BED

Protein Analysis

679

Amino Acids

77.05

Weight (kDa)

6.81

Isoelectric Point (pI)

43.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
hAT-like_RNase-H	PF14372	423 - 504	4e-12	hAT-like transposase, RNase-H fold
Dimer_Tnp_hAT	PF05699	559 - 639	9.4e-24	hAT family C-terminal dimerisation region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18560
fragaria_vesca	FvH4_5g12801 FvH4_5g12801 FvH4_5g12801 FvH4_5g12801 FvH4_5g12801
malus_domestica	MD06G1210000.v1.1 MD14G1220900.v1.1
prunus_persica	Prupe.5G216200_v2.0.a1 Prupe.5G216200_v2.0.a1
pyrus_communis	pycom06g18760 pycom06g18770 pycom14g18280
rosa_chinensis	RchiOBHm_Chr7g0184431
rosa_multiflora	Rmu_sc0038166.1_g000001 Rmu_sc0039138.1_g000001
rosa_roxburghii	Rroxscaffold_3G00269620
rosa_samantha	Rh7AG080000 Rh7BG067200 Rh7CG067500 Rh7DG067200
rosa_wichuraiana	Rw7G005530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	83
AasI	GACNNNNNNGTC	1 cut(s)	175
AatII	GACGTC	1 cut(s)	179
Acc36I	ACCTGC	1 cut(s)	83
AccB1I	GGYRCC	3 cut(s)	285, 1279, 1813
AccII	CGCG	1 cut(s)	1762
AccIII	TCCGGA	1 cut(s)	208
AciI	CCGC	4 cut(s)	80, 223, 1760, 1923
AclI	AACGTT	1 cut(s)	612
AclWI	GGATC	2 cut(s)	1320, 1451
AcoI	YGGCCR	1 cut(s)	533
AcsI	RAATTY	4 cut(s)	31, 1022, 1065, 1804
AcuI	CTGAAG	1 cut(s)	1401
AcyI	GRCGYC	1 cut(s)	176
AfaI	GTAC	2 cut(s)	803, 1940
AfiI	CCNNNNNNNGG	5 cut(s)	690, 757, 1086, 1289, 1290
AflIII	ACRYGT	1 cut(s)	1263
AgeI	ACCGGT	1 cut(s)	1571
AgsI	TTSAA	8 cut(s)	28, 37, 150, 471, 514, 621, 1369, 1936
AhdI	GACNNNNNGTC	1 cut(s)	706
AhlI	ACTAGT	1 cut(s)	1985
AjnI	CCWGG	2 cut(s)	304, 1416
Alw21I	GWGCWC	3 cut(s)	1196, 1271, 1680
Alw26I	GTCTC	4 cut(s)	194, 806, 1319, 1618
Alw44I	GTGCAC	1 cut(s)	1267
AlwI	GGATC	2 cut(s)	1320, 1451
Ama87I	CYCGRG	2 cut(s)	1727, 1779
Aor13HI	TCCGGA	1 cut(s)	208
AoxI	GGCC	1 cut(s)	533
ApaLI	GTGCAC	1 cut(s)	1267
ApeKI	GCWGC	7 cut(s)	11, 131, 430, 1040, 1186, 1376, 1858
ApoI	RAATTY	4 cut(s)	31, 1022, 1065, 1804
AsiGI	ACCGGT	1 cut(s)	1571
Asp700I	GAANNNNTTC	1 cut(s)	1543
AspA2I	CCTAGG	1 cut(s)	289
AspLEI	GCGC	1 cut(s)	1755
AspS9I	GGNCC	1 cut(s)	111
AsuHPI	GGTGA	4 cut(s)	107, 342, 673, 1343
AvaI	CYCGRG	2 cut(s)	1727, 1779
AvaII	GGWCC	1 cut(s)	111
AvrII	CCTAGG	1 cut(s)	289
BaeGI	GKGCMC	3 cut(s)	888, 1271, 1284
BanI	GGYRCC	3 cut(s)	285, 1279, 1813
BanII	GRGCYC	2 cut(s)	1196, 1680
BarI	GAAGNNNNNNTAC	2 cut(s)	1922, 1954
BbsI	GAAGAC	2 cut(s)	173, 1389
Bbv12I	GWGCWC	3 cut(s)	1196, 1271, 1680
BbvCI	CCTCAGC	1 cut(s)	1623
BbvI	GCAGC	6 cut(s)	118, 417, 1052, 1173, 1363, 1870
BccI	CCATC	7 cut(s)	55, 206, 368, 863, 932, 1570, 1966
BciT130I	CCWGG	2 cut(s)	306, 1418
BciVI	GTATCC	1 cut(s)	1571
BclI	TGATCA	1 cut(s)	927
BcoDI	GTCTC	4 cut(s)	194, 806, 1319, 1618
BcuI	ACTAGT	1 cut(s)	1985
BfaI	CTAG	6 cut(s)	290, 782, 816, 1172, 1235, 1986
BfmI	CTRYAG	2 cut(s)	366, 1038
BfuAI	ACCTGC	1 cut(s)	83
BfuI	GTATCC	1 cut(s)	1571
BglII	AGATCT	2 cut(s)	768, 1011
BisI	GCNGC	8 cut(s)	12, 132, 223, 431, 1041, 1187, 1377, 1859
BlnI	CCTAGG	1 cut(s)	289
BlpI	GCTNAGC	1 cut(s)	1190
BlsI	GCNGC	8 cut(s)	13, 133, 224, 432, 1042, 1188, 1378, 1860
Bme1390I	CCNGG	2 cut(s)	306, 1418
Bme18I	GGWCC	1 cut(s)	111
BmeRI	GACNNNNNGTC	1 cut(s)	706
BmeT110I	CYCGRG	2 cut(s)	1727, 1779
BmgT120I	GGNCC	1 cut(s)	111
BmiI	GGNNCC	5 cut(s)	48, 112, 287, 1281, 1815
BmrFI	CCNGG	2 cut(s)	306, 1418
BmrI	ACTGGG	1 cut(s)	16
BmuI	ACTGGG	1 cut(s)	16
BpiI	GAAGAC	2 cut(s)	173, 1389
BpmI	CTGGAG	1 cut(s)	1686
Bpu10I	CCTNAGC	1 cut(s)	1623
Bpu1102I	GCTNAGC	1 cut(s)	1190
BpuEI	CTTGAG	4 cut(s)	173, 372, 387, 1532
Bsa29I	ATCGAT	1 cut(s)	1228
BsaHI	GRCGYC	1 cut(s)	176
BsaJI	CCNNGG	5 cut(s)	289, 305, 474, 540, 1140
BsaWI	WCCGGW	2 cut(s)	208, 1571
BsaXI	ACNNNNNCTCC	6 cut(s)	127, 157, 1596, 1626, 1878, 1908
Bsc4I	CCNNNNNNNGG	5 cut(s)	690, 757, 1086, 1289, 1290
Bse118I	RCCGGY	2 cut(s)	225, 1571
Bse1I	ACTGG	5 cut(s)	11, 274, 695, 710, 1668
Bse3DI	GCAATG	2 cut(s)	255, 729
BseAI	TCCGGA	1 cut(s)	208
BseBI	CCWGG	2 cut(s)	306, 1418
BseCI	ATCGAT	1 cut(s)	1228
BseDI	CCNNGG	5 cut(s)	289, 305, 474, 540, 1140
BseGI	GGATG	7 cut(s)	217, 301, 331, 874, 1150, 1562, 1932
BseLI	CCNNNNNNNGG	5 cut(s)	690, 757, 1086, 1289, 1290
BseMI	GCAATG	2 cut(s)	255, 729
BseMII	CTCAG	7 cut(s)	129, 586, 1029, 1181, 1314, 1476, 1614
BseNI	ACTGG	5 cut(s)	11, 274, 695, 710, 1668
BseRI	GAGGAG	3 cut(s)	129, 132, 1613
BseSI	GKGCMC	3 cut(s)	888, 1271, 1284
BseXI	GCAGC	6 cut(s)	118, 417, 1052, 1173, 1363, 1870
BsgI	GTGCAG	2 cut(s)	814, 1817
Bsh1236I	CGCG	1 cut(s)	1762
Bsh1285I	CGRYCG	1 cut(s)	540
BshFI	GGCC	1 cut(s)	535
BshNI	GGYRCC	3 cut(s)	285, 1279, 1813
BshTI	ACCGGT	1 cut(s)	1571
BshVI	ATCGAT	1 cut(s)	1228
BsiEI	CGRYCG	1 cut(s)	540
BsiHKAI	GWGCWC	3 cut(s)	1196, 1271, 1680
BsiHKCI	CYCGRG	2 cut(s)	1727, 1779
BsiSI	CCGG	3 cut(s)	209, 226, 1572
BslI	CCNNNNNNNGG	5 cut(s)	690, 757, 1086, 1289, 1290
BsmAI	GTCTC	4 cut(s)	194, 806, 1319, 1618
BsmBI	CGTCTC	1 cut(s)	1319
BsmI	GAATGC	3 cut(s)	1188, 1213, 1378
BsnI	GGCC	1 cut(s)	535
BsoBI	CYCGRG	2 cut(s)	1727, 1779
Bsp1286I	GDGCHC	5 cut(s)	888, 1196, 1271, 1284, 1680
Bsp13I	TCCGGA	1 cut(s)	208
Bsp1407I	TGTACA	1 cut(s)	801
Bsp143I	GATC	7 cut(s)	768, 927, 963, 972, 1011, 1312, 1456
Bsp1720I	GCTNAGC	1 cut(s)	1190
Bsp19I	CCATGG	1 cut(s)	1140
BspACI	CCGC	4 cut(s)	80, 223, 1760, 1923
BspANI	GGCC	1 cut(s)	535
BspCNI	CTCAG	7 cut(s)	128, 585, 1028, 1182, 1315, 1477, 1615
BspDI	ATCGAT	1 cut(s)	1228
BspEI	TCCGGA	1 cut(s)	208
BspFNI	CGCG	1 cut(s)	1762
BspLI	GGNNCC	5 cut(s)	48, 112, 287, 1281, 1815
BspMAI	CTGCAG	1 cut(s)	1042
BspMI	ACCTGC	1 cut(s)	83
BspPI	GGATC	2 cut(s)	1320, 1451
BspT107I	GGYRCC	3 cut(s)	285, 1279, 1813
BsrDI	GCAATG	2 cut(s)	255, 729
BsrFI	RCCGGY	2 cut(s)	225, 1571
BsrGI	TGTACA	1 cut(s)	801
BsrI	ACTGG	5 cut(s)	11, 274, 695, 710, 1668
BssAI	RCCGGY	2 cut(s)	225, 1571
BssECI	CCNNGG	5 cut(s)	289, 305, 474, 540, 1140
BssMI	GATC	7 cut(s)	768, 927, 963, 972, 1011, 1312, 1456
BssNI	GRCGYC	1 cut(s)	176
BssT1I	CCWWGG	3 cut(s)	289, 474, 1140
Bst2UI	CCWGG	2 cut(s)	306, 1418
Bst4CI	ACNGT	6 cut(s)	337, 367, 845, 1089, 1288, 1827
Bst6I	CTCTTC	1 cut(s)	1307
BstACI	GRCGYC	1 cut(s)	176
BstAPI	GCANNNNNTGC	1 cut(s)	1988
BstAUI	TGTACA	1 cut(s)	801
BstC8I	GCNNGC	4 cut(s)	447, 492, 1800, 1871
BstDSI	CCRYGG	1 cut(s)	1140
BstF5I	GGATG	7 cut(s)	217, 301, 331, 874, 1150, 1562, 1932
BstFNI	CGCG	1 cut(s)	1762
BstHHI	GCGC	1 cut(s)	1755
BstKTI	GATC	7 cut(s)	771, 930, 966, 975, 1014, 1315, 1459
BstMAI	GTCTC	4 cut(s)	194, 806, 1319, 1618
BstMBI	GATC	7 cut(s)	768, 927, 963, 972, 1011, 1312, 1456
BstMCI	CGRYCG	1 cut(s)	540
BstMWI	GCNNNNNNNGC	7 cut(s)	20, 228, 1422, 1712, 1759, 1799, 1988
BstNI	CCWGG	2 cut(s)	306, 1418
BstNSI	RCATGY	2 cut(s)	1267, 1873
BstSCI	CCNGG	2 cut(s)	304, 1416
BstSFI	CTRYAG	2 cut(s)	366, 1038
BstSLI	GKGCMC	3 cut(s)	888, 1271, 1284
BstUI	CGCG	1 cut(s)	1762
BstV1I	GCAGC	6 cut(s)	118, 417, 1052, 1173, 1363, 1870
BstV2I	GAAGAC	2 cut(s)	173, 1389
BstX2I	RGATCY	2 cut(s)	768, 1011
BstYI	RGATCY	2 cut(s)	768, 1011
Bsu15I	ATCGAT	1 cut(s)	1228
BsuI	GTATCC	1 cut(s)	1571
BsuRI	GGCC	1 cut(s)	535
BsuTUI	ATCGAT	1 cut(s)	1228
BtgI	CCRYGG	1 cut(s)	1140
BtsCI	GGATG	7 cut(s)	217, 301, 331, 874, 1150, 1562, 1932
BtsIMutI	CAGTG	6 cut(s)	267, 363, 688, 1293, 1675, 1815
BveI	ACCTGC	1 cut(s)	83
Cac8I	GCNNGC	4 cut(s)	447, 492, 1800, 1871
CfoI	GCGC	1 cut(s)	1755
Cfr10I	RCCGGY	2 cut(s)	225, 1571
Cfr13I	GGNCC	1 cut(s)	111
ClaI	ATCGAT	1 cut(s)	1228
CseI	GACGC	1 cut(s)	1955
Csp6I	GTAC	2 cut(s)	802, 1939
CspAI	ACCGGT	1 cut(s)	1571
CspCI	CAANNNNNGTGG	4 cut(s)	220, 255, 1791, 1826
CviQI	GTAC	2 cut(s)	802, 1939
DpnI	GATC	7 cut(s)	770, 929, 965, 974, 1013, 1314, 1458
DpnII	GATC	7 cut(s)	768, 927, 963, 972, 1011, 1312, 1456
DraI	TTTAAA	2 cut(s)	423, 996
DrdI	GACNNNNNNGTC	1 cut(s)	175
DriI	GACNNNNNGTC	1 cut(s)	706
DseDI	GACNNNNNNGTC	1 cut(s)	175
EaeI	YGGCCR	1 cut(s)	533
Eam1104I	CTCTTC	1 cut(s)	1307
Eam1105I	GACNNNNNGTC	1 cut(s)	706
EarI	CTCTTC	1 cut(s)	1307
Ecl136II	GAGCTC	2 cut(s)	1194, 1678
Eco130I	CCWWGG	3 cut(s)	289, 474, 1140
Eco24I	GRGCYC	2 cut(s)	1196, 1680
Eco32I	GATATC	1 cut(s)	1232
Eco47I	GGWCC	1 cut(s)	111
Eco53kI	GAGCTC	2 cut(s)	1194, 1678
Eco57I	CTGAAG	1 cut(s)	1401
Eco88I	CYCGRG	2 cut(s)	1727, 1779
EcoICRI	GAGCTC	2 cut(s)	1194, 1678
EcoO109I	RGGNCCY	1 cut(s)	111
EcoRII	CCWGG	2 cut(s)	304, 1416
EcoRV	GATATC	1 cut(s)	1232
EcoT14I	CCWWGG	3 cut(s)	289, 474, 1140
EcoT22I	ATGCAT	1 cut(s)	1003
EcoT38I	GRGCYC	2 cut(s)	1196, 1680
ErhI	CCWWGG	3 cut(s)	289, 474, 1140
Esp3I	CGTCTC	1 cut(s)	1319
FalI	AAGNNNNNCTT	2 cut(s)	1881, 1913
FauI	CCCGC	2 cut(s)	1767, 1916
FbaI	TGATCA	1 cut(s)	927
Fnu4HI	GCNGC	8 cut(s)	12, 132, 223, 431, 1041, 1187, 1377, 1859
FokI	GGATG	7 cut(s)	224, 288, 338, 881, 1157, 1549, 1939
FriOI	GRGCYC	2 cut(s)	1196, 1680
Fsp4HI	GCNGC	8 cut(s)	12, 132, 223, 431, 1041, 1187, 1377, 1859
FspBI	CTAG	6 cut(s)	290, 782, 816, 1172, 1235, 1986
GlaI	GCGC	1 cut(s)	1754
GluI	GCNGC	8 cut(s)	12, 132, 223, 431, 1041, 1187, 1377, 1859
GsuI	CTGGAG	1 cut(s)	1686
HaeIII	GGCC	1 cut(s)	535
HapII	CCGG	3 cut(s)	209, 226, 1572
HgaI	GACGC	1 cut(s)	1955
HhaI	GCGC	1 cut(s)	1755
Hin1I	GRCGYC	1 cut(s)	176
Hin6I	GCGC	1 cut(s)	1753
HinP1I	GCGC	1 cut(s)	1753
HinfI	GANTC	3 cut(s)	72, 1346, 1863
HpaII	CCGG	3 cut(s)	209, 226, 1572
HphI	GGTGA	4 cut(s)	107, 342, 673, 1343
Hpy166II	GTNNAC	2 cut(s)	242, 1269
Hpy8I	GTNNAC	2 cut(s)	242, 1269
HpyAV	CCTTC	9 cut(s)	34, 156, 357, 477, 781, 1046, 1252, 1641, 1732
HpyCH4III	ACNGT	6 cut(s)	337, 367, 845, 1089, 1288, 1827
HpyCH4IV	ACGT	2 cut(s)	176, 612
HpyF10VI	GCNNNNNNNGC	7 cut(s)	20, 228, 1422, 1712, 1759, 1799, 1988
HpySE526I	ACGT	2 cut(s)	176, 612
Hsp92I	GRCGYC	1 cut(s)	176
HspAI	GCGC	1 cut(s)	1753
Kpn2I	TCCGGA	1 cut(s)	208
Ksp22I	TGATCA	1 cut(s)	927
Kzo9I	GATC	7 cut(s)	768, 927, 963, 972, 1011, 1312, 1456
LmnI	GCTCC	3 cut(s)	211, 465, 1711
Lsp1109I	GCAGC	6 cut(s)	118, 417, 1052, 1173, 1363, 1870
MaeI	CTAG	6 cut(s)	290, 782, 816, 1172, 1235, 1986
MaeII	ACGT	2 cut(s)	176, 612
MaeIII	GTNAC	6 cut(s)	17, 331, 679, 686, 737, 1914
MalI	GATC	7 cut(s)	770, 929, 965, 974, 1013, 1314, 1458
MboI	GATC	7 cut(s)	768, 927, 963, 972, 1011, 1312, 1456
MfeI	CAATTG	1 cut(s)	1031
MflI	RGATCY	2 cut(s)	768, 1011
MhlI	GDGCHC	5 cut(s)	888, 1196, 1271, 1284, 1680
Mph1103I	ATGCAT	1 cut(s)	1003
MroI	TCCGGA	1 cut(s)	208
MroXI	GAANNNNTTC	1 cut(s)	1543
MseI	TTAA	6 cut(s)	422, 438, 504, 995, 1467, 1494
MslI	CAYNNNNRTG	1 cut(s)	87
MspI	CCGG	3 cut(s)	209, 226, 1572
MspR9I	CCNGG	2 cut(s)	306, 1418
MunI	CAATTG	1 cut(s)	1031
Mva1269I	GAATGC	3 cut(s)	1188, 1213, 1378
MvaI	CCWGG	2 cut(s)	306, 1418
MvnI	CGCG	1 cut(s)	1762
MwoI	GCNNNNNNNGC	7 cut(s)	20, 228, 1422, 1712, 1759, 1799, 1988
NcoI	CCATGG	1 cut(s)	1140
NdeII	GATC	7 cut(s)	768, 927, 963, 972, 1011, 1312, 1456
NlaIV	GGNNCC	5 cut(s)	48, 112, 287, 1281, 1815
NmuCI	GTSAC	3 cut(s)	679, 686, 737
NsiI	ATGCAT	1 cut(s)	1003
NspI	RCATGY	2 cut(s)	1267, 1873
PaeI	GCATGC	1 cut(s)	1873
PaeR7I	CTCGAG	1 cut(s)	1727
PaqCI	CACCTGC	1 cut(s)	83
PciI	ACATGT	1 cut(s)	1263
PctI	GAATGC	3 cut(s)	1188, 1213, 1378
PdmI	GAANNNNTTC	1 cut(s)	1543
PfeI	GAWTC	3 cut(s)	72, 1346, 1863
PinAI	ACCGGT	1 cut(s)	1571
PkrI	GCNGC	8 cut(s)	13, 133, 224, 432, 1042, 1188, 1378, 1860
PpuMI	RGGWCCY	1 cut(s)	111
PscI	ACATGT	1 cut(s)	1263
Psp124BI	GAGCTC	2 cut(s)	1196, 1680
Psp1406I	AACGTT	1 cut(s)	612
Psp5II	RGGWCCY	1 cut(s)	111
Psp6I	CCWGG	2 cut(s)	304, 1416
PspGI	CCWGG	2 cut(s)	304, 1416
PspN4I	GGNNCC	5 cut(s)	48, 112, 287, 1281, 1815
PspPI	GGNCC	1 cut(s)	111
PspPPI	RGGWCCY	1 cut(s)	111
PsrI	GAACNNNNNNTAC	2 cut(s)	1999, 2031
PstI	CTGCAG	1 cut(s)	1042
PsuI	RGATCY	2 cut(s)	768, 1011
RsaI	GTAC	2 cut(s)	803, 1940
RsaNI	GTAC	2 cut(s)	802, 1939
RseI	CAYNNNNRTG	1 cut(s)	87
SacI	GAGCTC	2 cut(s)	1196, 1680
SaqAI	TTAA	6 cut(s)	422, 438, 504, 995, 1467, 1494
SatI	GCNGC	8 cut(s)	12, 132, 223, 431, 1041, 1187, 1377, 1859
Sau3AI	GATC	7 cut(s)	768, 927, 963, 972, 1011, 1312, 1456
Sau96I	GGNCC	1 cut(s)	111
ScrFI	CCNGG	2 cut(s)	306, 1418
SduI	GDGCHC	5 cut(s)	888, 1196, 1271, 1284, 1680
SfcI	CTRYAG	2 cut(s)	366, 1038
Sfr274I	CTCGAG	1 cut(s)	1727
SgrAI	CRCCGGYG	1 cut(s)	225
SinI	GGWCC	1 cut(s)	111
SlaI	CTCGAG	1 cut(s)	1727
SmiI	ATTTAAAT	1 cut(s)	423
SmiMI	CAYNNNNRTG	1 cut(s)	87
SmlI	CTYRAG	5 cut(s)	188, 387, 402, 1511, 1727
SmoI	CTYRAG	5 cut(s)	188, 387, 402, 1511, 1727
SpeI	ACTAGT	1 cut(s)	1985
SphI	GCATGC	1 cut(s)	1873
SsiI	CCGC	4 cut(s)	80, 223, 1760, 1923
SspI	AATATT	1 cut(s)	558
SspMI	CTAG	6 cut(s)	290, 782, 816, 1172, 1235, 1986
SstI	GAGCTC	2 cut(s)	1196, 1680
StyD4I	CCNGG	2 cut(s)	304, 1416
StyI	CCWWGG	3 cut(s)	289, 474, 1140
SwaI	ATTTAAAT	1 cut(s)	423
TaaI	ACNGT	6 cut(s)	337, 367, 845, 1089, 1288, 1827
TaiI	ACGT	2 cut(s)	179, 615
TaqI	TCGA	5 cut(s)	198, 765, 1228, 1462, 1728
TaqII	GACCGA	1 cut(s)	554
TatI	WGTACW	2 cut(s)	801, 1938
TauI	GCSGC	1 cut(s)	225
TfiI	GAWTC	3 cut(s)	72, 1346, 1863
Tru1I	TTAA	6 cut(s)	422, 438, 504, 995, 1467, 1494
Tru9I	TTAA	6 cut(s)	422, 438, 504, 995, 1467, 1494
TscAI	CASTG	6 cut(s)	274, 370, 695, 1293, 1675, 1815
TseFI	GTSAC	3 cut(s)	679, 686, 737
TseI	GCWGC	7 cut(s)	11, 131, 430, 1040, 1186, 1376, 1858
Tsp45I	GTSAC	3 cut(s)	679, 686, 737
TspDTI	ATGAA	5 cut(s)	429, 672, 1297, 1522, 1943
TspGWI	ACGGA	1 cut(s)	169
TspRI	CASTG	6 cut(s)	274, 370, 695, 1293, 1675, 1815
VneI	GTGCAC	1 cut(s)	1267
VpaK11BI	GGWCC	1 cut(s)	111
XapI	RAATTY	4 cut(s)	31, 1022, 1065, 1804
XbaI	TCTAGA	1 cut(s)	1234
XceI	RCATGY	2 cut(s)	1267, 1873
XcmI	CCANNNNNNNNNTGG	4 cut(s)	58, 64, 274, 1291
XhoI	CTCGAG	1 cut(s)	1727
XmaJI	CCTAGG	1 cut(s)	289
XmnI	GAANNNNTTC	1 cut(s)	1543
XspI	CTAG	6 cut(s)	290, 782, 816, 1172, 1235, 1986
ZraI	GACGTC	1 cut(s)	177
Zsp2I	ATGCAT	1 cut(s)	1003

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.