Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0009501

Physical Location & Seq

Genomic Coordinates Reverse (-)

5761001 .. 5764108

Gene Structure 3108 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG080000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2037 bp

ATGGACTGGGCTGCAAGTAACGCCTTCAAAAATTTCAAAGATGTGGAACCCAAGTCCATGATGGAAATGGGAATCATTCCGCACATTGATGCAGGTGATATTGGTTTGGGGTCCTCAGACAAGGGGAACGCTGCTACTCCTCCTTCAACAAAACCGAGAAAGAAGACCATGACGTCCGTTTATCTCAAGTTTTTCGAGACAGCTCCGGATGGAAAAAGCCGCCGGTGCAAGTTCTGTGGACAAAGCTATTCCATTGCTACTGCCACTGGCAATCTGGGGAGGCACCTAGGTAATCGGCATCCAGGGTATGATAAGTCGGGGGATGTTGTTACTGTTTCCAATCCTTCACCACAGCCCATCACTGTAGTCAGGAAGCATCAATCTCAAGCAAAAGCATCTCAAGTGGATTATGAACATTTAAATTGGCTGCTCGTTAAATGGCTTGCTTTAGCTTCGCTCCCTCCTTCAACCTTGGAAGAAATGTGGCTCGCCAACTCTTTTAAGTTTTTGAACCCGTCAATACAGCTCTGGCCGACTGAGGATTACAAGAAAATATTTCGTGATGTTCTCAGGAGTATGCAGGAAGTAGTGAGAGCATCTATGGAAAACGTTTCTTCAAAGCTCTCAATCACACTTGACTTTTGGACTTCTTATGAAAGGATTTTTTATATGAGTGTCACCTGTCACTGGATTGACGACAACTGGTCTTTCCAAAAGGCAATGCTTGATGTTTGTCACATTCCTTTCCCTTGTGGGGTTGTCGAGATCTACAACTCTCTAGTGAAGGTTCTTAGGTTGTACAACATTGAGACTAGAATACTCTCCTGCACCCATGATAACAGTCAAAGTGCCTTACAGAACTTGGATGGTCAGAATGTGGGGCACTTCTGTTATATCCCCTGTTCTGCTCACACTTTGAGCTTGATCATAGATGATGGATTGAGAACCATAGAACAAGTAATCGCTAAGATCAGAGAGTTTGTATTATGTTTAAATGCATCATCAGAGATCTCAGAGGAATTTACTCAATTGACTGCAGCTTACCACGAAGGCACTTGGAAAATTCCACTTGATGCCTCTACACGGTGGAGTGGCAACTATCAGATGCTTGATATTGTATGCAAGGCTTCTAAGTCCATGGATGCTGTTATCAGGAAGTATGAGATACTAGGCAATAGAATGCTGCTGAGCTCTGTGGAGAAGAATGCAGTCAATAATGTGCATCGATATCTAGAACCCTTCTACAAAACCACAAACAACATGTGCACAAACAAGGTGCCCACAGTGGGGCTGGTTCTCTTCTTCATGGATCACATTTCTGAGACGATTGCTAATTGCAGAGATTCTCACCTTTATCCAGAGTTGAAGAATGCTGCTGAAGACATGGCTAAAAAGGTTAGAAACTACAATAGCCAGGTCTGCAACATATTTACCTACATGACAGCAATTCTTGATCCTCGAATTAAAGGAGAGCTAATTCCTGAGAGCCTTAATTCAGACAATTTTCTTGAGGAAGCGAGAACCCATTTCATTAGAAACTATTCTATCAATCATTTCCCATCCATGACTGGTGGATACAGCAATCAAGAAATAGAGGAGGGAGGTAATGTCTCTTTTGCTGAGGAAATTGCCCGAAAGAAAAGAAGGGCAAACACGAACAATTCCAGTGATGAGCTCACTCAATATCTGTCAGAGCCTCCAGCTCCATTAGCAACAGATGTTCTCGAGTGGTGGAAGGTCAATAGTATGCGCTACCCGCGACTTTCTGTAATGGCTCGGGATTTCTTGGCTGTGCAGGCAAATTCAGTGGCACCAGAAGAACTGTTCTGTGGCAAAGGTGCTGAAATTGATAAGCAGCGATTCTGCATGCCACATGATAGCACACAAGCTCTCCTTTGTATAAGGTCATGGTTACAAAGCGGGATGAAGTTGAAGTACAAGACAACCGAAATAGATTTTGAGCGTCTGATGGAATTGGCAACTAGTGCTGATAATCATAGTAGTAATGCTGGTTCGGAGAAGAAACAAAGACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4413 Dimer_Tnp_hAT zf-BED

Protein Analysis

678

Amino Acids

76.95

Weight (kDa)

6.81

Isoelectric Point (pI)

43.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
hAT-like_RNase-H	PF14372	422 - 503	2.7e-12	hAT-like transposase, RNase-H fold
Dimer_Tnp_hAT	PF05699	558 - 638	1.2e-23	hAT family C-terminal dimerisation region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18560
fragaria_vesca	FvH4_5g12801 FvH4_5g12801 FvH4_5g12801 FvH4_5g12801 FvH4_5g12801
malus_domestica	MD06G1210000.v1.1 MD14G1220900.v1.1
prunus_persica	Prupe.5G216200_v2.0.a1 Prupe.5G216200_v2.0.a1
pyrus_communis	pycom06g18760 pycom06g18770 pycom14g18280
rosa_chinensis	RchiOBHm_Chr7g0184431
rosa_multiflora	Rmu_sc0038166.1_g000001 Rmu_sc0039138.1_g000001
rosa_roxburghii	Rroxscaffold_3G00269620
rosa_samantha	Rh7AG080000 Rh7BG067200 Rh7CG067500 Rh7DG067200
rosa_wichuraiana	Rw7G005530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	83
AasI	GACNNNNNNGTC	1 cut(s)	172
AatII	GACGTC	1 cut(s)	176
Acc36I	ACCTGC	1 cut(s)	83
AccB1I	GGYRCC	3 cut(s)	282, 1276, 1810
AccII	CGCG	1 cut(s)	1759
AccIII	TCCGGA	1 cut(s)	205
AciI	CCGC	4 cut(s)	80, 220, 1757, 1920
AclI	AACGTT	1 cut(s)	609
AclWI	GGATC	2 cut(s)	1317, 1448
AcoI	YGGCCR	1 cut(s)	530
AcsI	RAATTY	4 cut(s)	31, 1019, 1062, 1801
AcuI	CTGAAG	1 cut(s)	1398
AcyI	GRCGYC	1 cut(s)	173
AfaI	GTAC	2 cut(s)	800, 1937
AfiI	CCNNNNNNNGG	5 cut(s)	687, 754, 1083, 1286, 1287
AflIII	ACRYGT	1 cut(s)	1260
AgsI	TTSAA	8 cut(s)	28, 37, 147, 468, 511, 618, 1366, 1933
AhdI	GACNNNNNGTC	1 cut(s)	703
AhlI	ACTAGT	1 cut(s)	1982
AjnI	CCWGG	2 cut(s)	301, 1413
Alw21I	GWGCWC	3 cut(s)	1193, 1268, 1677
Alw26I	GTCTC	4 cut(s)	191, 803, 1316, 1615
Alw44I	GTGCAC	1 cut(s)	1264
AlwI	GGATC	2 cut(s)	1317, 1448
Ama87I	CYCGRG	2 cut(s)	1724, 1776
Aor13HI	TCCGGA	1 cut(s)	205
AoxI	GGCC	1 cut(s)	530
ApaLI	GTGCAC	1 cut(s)	1264
ApeKI	GCWGC	7 cut(s)	11, 131, 427, 1037, 1183, 1373, 1855
ApoI	RAATTY	4 cut(s)	31, 1019, 1062, 1801
Asp700I	GAANNNNTTC	1 cut(s)	1540
AspA2I	CCTAGG	1 cut(s)	286
AspLEI	GCGC	1 cut(s)	1752
AspS9I	GGNCC	1 cut(s)	111
AsuHPI	GGTGA	4 cut(s)	107, 339, 670, 1340
AvaI	CYCGRG	2 cut(s)	1724, 1776
AvaII	GGWCC	1 cut(s)	111
AvrII	CCTAGG	1 cut(s)	286
BaeGI	GKGCMC	3 cut(s)	885, 1268, 1281
BanI	GGYRCC	3 cut(s)	282, 1276, 1810
BanII	GRGCYC	2 cut(s)	1193, 1677
BarI	GAAGNNNNNNTAC	2 cut(s)	1919, 1951
BbsI	GAAGAC	2 cut(s)	170, 1386
Bbv12I	GWGCWC	3 cut(s)	1193, 1268, 1677
BbvCI	CCTCAGC	1 cut(s)	1620
BbvI	GCAGC	6 cut(s)	118, 414, 1049, 1170, 1360, 1867
BccI	CCATC	7 cut(s)	55, 203, 365, 860, 929, 1567, 1963
BciT130I	CCWGG	2 cut(s)	303, 1415
BciVI	GTATCC	1 cut(s)	1568
BclI	TGATCA	1 cut(s)	924
BcoDI	GTCTC	4 cut(s)	191, 803, 1316, 1615
BcuI	ACTAGT	1 cut(s)	1982
BfaI	CTAG	6 cut(s)	287, 779, 813, 1169, 1232, 1983
BfmI	CTRYAG	2 cut(s)	363, 1035
BfuAI	ACCTGC	1 cut(s)	83
BfuI	GTATCC	1 cut(s)	1568
BglII	AGATCT	2 cut(s)	765, 1008
BisI	GCNGC	8 cut(s)	12, 132, 220, 428, 1038, 1184, 1374, 1856
BlnI	CCTAGG	1 cut(s)	286
BlpI	GCTNAGC	1 cut(s)	1187
BlsI	GCNGC	8 cut(s)	13, 133, 221, 429, 1039, 1185, 1375, 1857
Bme1390I	CCNGG	2 cut(s)	303, 1415
Bme18I	GGWCC	1 cut(s)	111
BmeRI	GACNNNNNGTC	1 cut(s)	703
BmeT110I	CYCGRG	2 cut(s)	1724, 1776
BmgT120I	GGNCC	1 cut(s)	111
BmiI	GGNNCC	5 cut(s)	48, 112, 284, 1278, 1812
BmrFI	CCNGG	2 cut(s)	303, 1415
BmrI	ACTGGG	1 cut(s)	16
BmuI	ACTGGG	1 cut(s)	16
BpiI	GAAGAC	2 cut(s)	170, 1386
BpmI	CTGGAG	1 cut(s)	1683
Bpu10I	CCTNAGC	1 cut(s)	1620
Bpu1102I	GCTNAGC	1 cut(s)	1187
BpuEI	CTTGAG	4 cut(s)	170, 369, 384, 1529
Bsa29I	ATCGAT	1 cut(s)	1225
BsaHI	GRCGYC	1 cut(s)	173
BsaJI	CCNNGG	4 cut(s)	286, 302, 471, 1137
BsaWI	WCCGGW	1 cut(s)	205
BsaXI	ACNNNNNCTCC	4 cut(s)	1593, 1623, 1875, 1905
Bsc4I	CCNNNNNNNGG	5 cut(s)	687, 754, 1083, 1286, 1287
Bse118I	RCCGGY	1 cut(s)	222
Bse1I	ACTGG	6 cut(s)	11, 271, 692, 707, 1573, 1665
Bse3DI	GCAATG	2 cut(s)	252, 726
BseAI	TCCGGA	1 cut(s)	205
BseBI	CCWGG	2 cut(s)	303, 1415
BseCI	ATCGAT	1 cut(s)	1225
BseDI	CCNNGG	4 cut(s)	286, 302, 471, 1137
BseGI	GGATG	7 cut(s)	214, 298, 328, 871, 1147, 1559, 1929
BseLI	CCNNNNNNNGG	5 cut(s)	687, 754, 1083, 1286, 1287
BseMI	GCAATG	2 cut(s)	252, 726
BseMII	CTCAG	8 cut(s)	129, 528, 583, 1026, 1178, 1311, 1473, 1611
BseNI	ACTGG	6 cut(s)	11, 271, 692, 707, 1573, 1665
BseRI	GAGGAG	2 cut(s)	129, 1610
BseSI	GKGCMC	3 cut(s)	885, 1268, 1281
BseXI	GCAGC	6 cut(s)	118, 414, 1049, 1170, 1360, 1867
BsgI	GTGCAG	2 cut(s)	811, 1814
Bsh1236I	CGCG	1 cut(s)	1759
BshFI	GGCC	1 cut(s)	532
BshNI	GGYRCC	3 cut(s)	282, 1276, 1810
BshVI	ATCGAT	1 cut(s)	1225
BsiHKAI	GWGCWC	3 cut(s)	1193, 1268, 1677
BsiHKCI	CYCGRG	2 cut(s)	1724, 1776
BsiSI	CCGG	2 cut(s)	206, 223
BslI	CCNNNNNNNGG	5 cut(s)	687, 754, 1083, 1286, 1287
BsmAI	GTCTC	4 cut(s)	191, 803, 1316, 1615
BsmBI	CGTCTC	1 cut(s)	1316
BsmI	GAATGC	3 cut(s)	1185, 1210, 1375
BsnI	GGCC	1 cut(s)	532
BsoBI	CYCGRG	2 cut(s)	1724, 1776
Bsp1286I	GDGCHC	5 cut(s)	885, 1193, 1268, 1281, 1677
Bsp13I	TCCGGA	1 cut(s)	205
Bsp1407I	TGTACA	1 cut(s)	798
Bsp143I	GATC	6 cut(s)	765, 924, 969, 1008, 1309, 1453
Bsp1720I	GCTNAGC	1 cut(s)	1187
Bsp19I	CCATGG	1 cut(s)	1137
BspACI	CCGC	4 cut(s)	80, 220, 1757, 1920
BspANI	GGCC	1 cut(s)	532
BspCNI	CTCAG	8 cut(s)	128, 529, 582, 1025, 1179, 1312, 1474, 1612
BspDI	ATCGAT	1 cut(s)	1225
BspEI	TCCGGA	1 cut(s)	205
BspFNI	CGCG	1 cut(s)	1759
BspLI	GGNNCC	5 cut(s)	48, 112, 284, 1278, 1812
BspMAI	CTGCAG	1 cut(s)	1039
BspMI	ACCTGC	1 cut(s)	83
BspPI	GGATC	2 cut(s)	1317, 1448
BspT107I	GGYRCC	3 cut(s)	282, 1276, 1810
BsrDI	GCAATG	2 cut(s)	252, 726
BsrFI	RCCGGY	1 cut(s)	222
BsrGI	TGTACA	1 cut(s)	798
BsrI	ACTGG	6 cut(s)	11, 271, 692, 707, 1573, 1665
BssAI	RCCGGY	1 cut(s)	222
BssECI	CCNNGG	4 cut(s)	286, 302, 471, 1137
BssMI	GATC	6 cut(s)	765, 924, 969, 1008, 1309, 1453
BssNI	GRCGYC	1 cut(s)	173
BssT1I	CCWWGG	3 cut(s)	286, 471, 1137
Bst2UI	CCWGG	2 cut(s)	303, 1415
Bst4CI	ACNGT	6 cut(s)	334, 364, 842, 1086, 1285, 1824
Bst6I	CTCTTC	1 cut(s)	1304
BstACI	GRCGYC	1 cut(s)	173
BstAPI	GCANNNNNTGC	1 cut(s)	1985
BstAUI	TGTACA	1 cut(s)	798
BstC8I	GCNNGC	4 cut(s)	444, 489, 1797, 1868
BstDSI	CCRYGG	1 cut(s)	1137
BstF5I	GGATG	7 cut(s)	214, 298, 328, 871, 1147, 1559, 1929
BstFNI	CGCG	1 cut(s)	1759
BstHHI	GCGC	1 cut(s)	1752
BstKTI	GATC	6 cut(s)	768, 927, 972, 1011, 1312, 1456
BstMAI	GTCTC	4 cut(s)	191, 803, 1316, 1615
BstMBI	GATC	6 cut(s)	765, 924, 969, 1008, 1309, 1453
BstMWI	GCNNNNNNNGC	7 cut(s)	20, 225, 1419, 1709, 1756, 1796, 1985
BstNI	CCWGG	2 cut(s)	303, 1415
BstNSI	RCATGY	2 cut(s)	1264, 1870
BstSCI	CCNGG	2 cut(s)	301, 1413
BstSFI	CTRYAG	2 cut(s)	363, 1035
BstSLI	GKGCMC	3 cut(s)	885, 1268, 1281
BstUI	CGCG	1 cut(s)	1759
BstV1I	GCAGC	6 cut(s)	118, 414, 1049, 1170, 1360, 1867
BstV2I	GAAGAC	2 cut(s)	170, 1386
BstX2I	RGATCY	2 cut(s)	765, 1008
BstYI	RGATCY	2 cut(s)	765, 1008
Bsu15I	ATCGAT	1 cut(s)	1225
BsuI	GTATCC	1 cut(s)	1568
BsuRI	GGCC	1 cut(s)	532
BsuTUI	ATCGAT	1 cut(s)	1225
BtgI	CCRYGG	1 cut(s)	1137
BtsCI	GGATG	7 cut(s)	214, 298, 328, 871, 1147, 1559, 1929
BtsIMutI	CAGTG	6 cut(s)	264, 360, 685, 1290, 1672, 1812
BveI	ACCTGC	1 cut(s)	83
Cac8I	GCNNGC	4 cut(s)	444, 489, 1797, 1868
CfoI	GCGC	1 cut(s)	1752
Cfr10I	RCCGGY	1 cut(s)	222
Cfr13I	GGNCC	1 cut(s)	111
ClaI	ATCGAT	1 cut(s)	1225
CseI	GACGC	1 cut(s)	1952
Csp6I	GTAC	2 cut(s)	799, 1936
CspCI	CAANNNNNGTGG	4 cut(s)	217, 252, 1788, 1823
CviQI	GTAC	2 cut(s)	799, 1936
DpnI	GATC	6 cut(s)	767, 926, 971, 1010, 1311, 1455
DpnII	GATC	6 cut(s)	765, 924, 969, 1008, 1309, 1453
DraI	TTTAAA	2 cut(s)	420, 993
DrdI	GACNNNNNNGTC	1 cut(s)	172
DriI	GACNNNNNGTC	1 cut(s)	703
DseDI	GACNNNNNNGTC	1 cut(s)	172
EaeI	YGGCCR	1 cut(s)	530
Eam1104I	CTCTTC	1 cut(s)	1304
Eam1105I	GACNNNNNGTC	1 cut(s)	703
EarI	CTCTTC	1 cut(s)	1304
Ecl136II	GAGCTC	2 cut(s)	1191, 1675
Eco130I	CCWWGG	3 cut(s)	286, 471, 1137
Eco24I	GRGCYC	2 cut(s)	1193, 1677
Eco32I	GATATC	1 cut(s)	1229
Eco47I	GGWCC	1 cut(s)	111
Eco53kI	GAGCTC	2 cut(s)	1191, 1675
Eco57I	CTGAAG	1 cut(s)	1398
Eco88I	CYCGRG	2 cut(s)	1724, 1776
EcoICRI	GAGCTC	2 cut(s)	1191, 1675
EcoO109I	RGGNCCY	1 cut(s)	111
EcoRII	CCWGG	2 cut(s)	301, 1413
EcoRV	GATATC	1 cut(s)	1229
EcoT14I	CCWWGG	3 cut(s)	286, 471, 1137
EcoT22I	ATGCAT	1 cut(s)	1000
EcoT38I	GRGCYC	2 cut(s)	1193, 1677
ErhI	CCWWGG	3 cut(s)	286, 471, 1137
Esp3I	CGTCTC	1 cut(s)	1316
FalI	AAGNNNNNCTT	2 cut(s)	1878, 1910
FauI	CCCGC	2 cut(s)	1764, 1913
FbaI	TGATCA	1 cut(s)	924
Fnu4HI	GCNGC	8 cut(s)	12, 132, 220, 428, 1038, 1184, 1374, 1856
FokI	GGATG	7 cut(s)	221, 285, 335, 878, 1154, 1546, 1936
FriOI	GRGCYC	2 cut(s)	1193, 1677
Fsp4HI	GCNGC	8 cut(s)	12, 132, 220, 428, 1038, 1184, 1374, 1856
FspBI	CTAG	6 cut(s)	287, 779, 813, 1169, 1232, 1983
GlaI	GCGC	1 cut(s)	1751
GluI	GCNGC	8 cut(s)	12, 132, 220, 428, 1038, 1184, 1374, 1856
GsuI	CTGGAG	1 cut(s)	1683
HaeIII	GGCC	1 cut(s)	532
HapII	CCGG	2 cut(s)	206, 223
HgaI	GACGC	1 cut(s)	1952
HhaI	GCGC	1 cut(s)	1752
Hin1I	GRCGYC	1 cut(s)	173
Hin6I	GCGC	1 cut(s)	1750
HinP1I	GCGC	1 cut(s)	1750
HinfI	GANTC	3 cut(s)	72, 1343, 1860
HpaII	CCGG	2 cut(s)	206, 223
HphI	GGTGA	4 cut(s)	107, 339, 670, 1340
Hpy166II	GTNNAC	2 cut(s)	239, 1266
Hpy8I	GTNNAC	2 cut(s)	239, 1266
HpyAV	CCTTC	9 cut(s)	34, 153, 354, 474, 778, 1043, 1249, 1638, 1729
HpyCH4III	ACNGT	6 cut(s)	334, 364, 842, 1086, 1285, 1824
HpyCH4IV	ACGT	2 cut(s)	173, 609
HpyF10VI	GCNNNNNNNGC	7 cut(s)	20, 225, 1419, 1709, 1756, 1796, 1985
HpySE526I	ACGT	2 cut(s)	173, 609
Hsp92I	GRCGYC	1 cut(s)	173
HspAI	GCGC	1 cut(s)	1750
Kpn2I	TCCGGA	1 cut(s)	205
Ksp22I	TGATCA	1 cut(s)	924
Kzo9I	GATC	6 cut(s)	765, 924, 969, 1008, 1309, 1453
LmnI	GCTCC	3 cut(s)	208, 462, 1708
Lsp1109I	GCAGC	6 cut(s)	118, 414, 1049, 1170, 1360, 1867
MaeI	CTAG	6 cut(s)	287, 779, 813, 1169, 1232, 1983
MaeII	ACGT	2 cut(s)	173, 609
MaeIII	GTNAC	6 cut(s)	17, 328, 676, 683, 734, 1911
MalI	GATC	6 cut(s)	767, 926, 971, 1010, 1311, 1455
MboI	GATC	6 cut(s)	765, 924, 969, 1008, 1309, 1453
MfeI	CAATTG	1 cut(s)	1028
MflI	RGATCY	2 cut(s)	765, 1008
MhlI	GDGCHC	5 cut(s)	885, 1193, 1268, 1281, 1677
Mph1103I	ATGCAT	1 cut(s)	1000
MroI	TCCGGA	1 cut(s)	205
MroXI	GAANNNNTTC	1 cut(s)	1540
MseI	TTAA	6 cut(s)	419, 435, 501, 992, 1464, 1491
MslI	CAYNNNNRTG	1 cut(s)	87
MspI	CCGG	2 cut(s)	206, 223
MspR9I	CCNGG	2 cut(s)	303, 1415
MunI	CAATTG	1 cut(s)	1028
Mva1269I	GAATGC	3 cut(s)	1185, 1210, 1375
MvaI	CCWGG	2 cut(s)	303, 1415
MvnI	CGCG	1 cut(s)	1759
MwoI	GCNNNNNNNGC	7 cut(s)	20, 225, 1419, 1709, 1756, 1796, 1985
NcoI	CCATGG	1 cut(s)	1137
NdeII	GATC	6 cut(s)	765, 924, 969, 1008, 1309, 1453
NlaIV	GGNNCC	5 cut(s)	48, 112, 284, 1278, 1812
NmuCI	GTSAC	3 cut(s)	676, 683, 734
NsiI	ATGCAT	1 cut(s)	1000
NspI	RCATGY	2 cut(s)	1264, 1870
PaeI	GCATGC	1 cut(s)	1870
PaeR7I	CTCGAG	1 cut(s)	1724
PaqCI	CACCTGC	1 cut(s)	83
PciI	ACATGT	1 cut(s)	1260
PctI	GAATGC	3 cut(s)	1185, 1210, 1375
PdmI	GAANNNNTTC	1 cut(s)	1540
PfeI	GAWTC	3 cut(s)	72, 1343, 1860
PkrI	GCNGC	8 cut(s)	13, 133, 221, 429, 1039, 1185, 1375, 1857
PpuMI	RGGWCCY	1 cut(s)	111
PscI	ACATGT	1 cut(s)	1260
Psp124BI	GAGCTC	2 cut(s)	1193, 1677
Psp1406I	AACGTT	1 cut(s)	609
Psp5II	RGGWCCY	1 cut(s)	111
Psp6I	CCWGG	2 cut(s)	301, 1413
PspGI	CCWGG	2 cut(s)	301, 1413
PspN4I	GGNNCC	5 cut(s)	48, 112, 284, 1278, 1812
PspPI	GGNCC	1 cut(s)	111
PspPPI	RGGWCCY	1 cut(s)	111
PsrI	GAACNNNNNNTAC	2 cut(s)	1996, 2028
PstI	CTGCAG	1 cut(s)	1039
PsuI	RGATCY	2 cut(s)	765, 1008
RsaI	GTAC	2 cut(s)	800, 1937
RsaNI	GTAC	2 cut(s)	799, 1936
RseI	CAYNNNNRTG	1 cut(s)	87
SacI	GAGCTC	2 cut(s)	1193, 1677
SaqAI	TTAA	6 cut(s)	419, 435, 501, 992, 1464, 1491
SatI	GCNGC	8 cut(s)	12, 132, 220, 428, 1038, 1184, 1374, 1856
Sau3AI	GATC	6 cut(s)	765, 924, 969, 1008, 1309, 1453
Sau96I	GGNCC	1 cut(s)	111
ScrFI	CCNGG	2 cut(s)	303, 1415
SduI	GDGCHC	5 cut(s)	885, 1193, 1268, 1281, 1677
SfcI	CTRYAG	2 cut(s)	363, 1035
Sfr274I	CTCGAG	1 cut(s)	1724
SgrAI	CRCCGGYG	1 cut(s)	222
SinI	GGWCC	1 cut(s)	111
SlaI	CTCGAG	1 cut(s)	1724
SmiI	ATTTAAAT	1 cut(s)	420
SmiMI	CAYNNNNRTG	1 cut(s)	87
SmlI	CTYRAG	5 cut(s)	185, 384, 399, 1508, 1724
SmoI	CTYRAG	5 cut(s)	185, 384, 399, 1508, 1724
SpeI	ACTAGT	1 cut(s)	1982
SphI	GCATGC	1 cut(s)	1870
SsiI	CCGC	4 cut(s)	80, 220, 1757, 1920
SspI	AATATT	1 cut(s)	555
SspMI	CTAG	6 cut(s)	287, 779, 813, 1169, 1232, 1983
SstI	GAGCTC	2 cut(s)	1193, 1677
StyD4I	CCNGG	2 cut(s)	301, 1413
StyI	CCWWGG	3 cut(s)	286, 471, 1137
SwaI	ATTTAAAT	1 cut(s)	420
TaaI	ACNGT	6 cut(s)	334, 364, 842, 1086, 1285, 1824
TaiI	ACGT	2 cut(s)	176, 612
TaqI	TCGA	5 cut(s)	195, 762, 1225, 1459, 1725
TatI	WGTACW	2 cut(s)	798, 1935
TauI	GCSGC	1 cut(s)	222
TfiI	GAWTC	3 cut(s)	72, 1343, 1860
Tru1I	TTAA	6 cut(s)	419, 435, 501, 992, 1464, 1491
Tru9I	TTAA	6 cut(s)	419, 435, 501, 992, 1464, 1491
TscAI	CASTG	6 cut(s)	271, 367, 692, 1290, 1672, 1812
TseFI	GTSAC	3 cut(s)	676, 683, 734
TseI	GCWGC	7 cut(s)	11, 131, 427, 1037, 1183, 1373, 1855
Tsp45I	GTSAC	3 cut(s)	676, 683, 734
TspDTI	ATGAA	5 cut(s)	426, 669, 1294, 1519, 1940
TspGWI	ACGGA	1 cut(s)	166
TspRI	CASTG	6 cut(s)	271, 367, 692, 1290, 1672, 1812
VneI	GTGCAC	1 cut(s)	1264
VpaK11BI	GGWCC	1 cut(s)	111
XapI	RAATTY	4 cut(s)	31, 1019, 1062, 1801
XbaI	TCTAGA	1 cut(s)	1231
XceI	RCATGY	2 cut(s)	1264, 1870
XcmI	CCANNNNNNNNNTGG	4 cut(s)	58, 64, 271, 1288
XhoI	CTCGAG	1 cut(s)	1724
XmaJI	CCTAGG	1 cut(s)	286
XmnI	GAANNNNTTC	1 cut(s)	1540
XspI	CTAG	6 cut(s)	287, 779, 813, 1169, 1232, 1983
ZraI	GACGTC	1 cut(s)	174
Zsp2I	ATGCAT	1 cut(s)	1000

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.