Rmu_sc0039138.1_g000001

BED zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0039138.1
OG0009501
Physical Location & Seq
Forward (+)
31 .. 724
694 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0039138.1_g000001.1.cds

Sequence Viewer

Length: 448 bp
atggactgggctgcaagtaacgccttcaaaaatttcaaagatgtggaacccaagtccatgatggaaatgggaatcattccgcacattgatgcaggtgatattggtttggggtcctcagacaaggggaacgctgctactcctccttcaacaaaaccgagaaagaagaccatgacgtccgtttatctcaagtttttcgagacagctccggatggaaaaagccgccggtgcaagttctgtggacaaagctattccattgctactgccactggcaatctggggaggcacctaggtaatcggcatccagggtatgataagtcgggggatgttgttactgtttccaatccttcaccgcagcccatcactgtaatcaggaagcatcaatctcaagcaaaagcatctcaagtggattatgaacatttaaattggctgctcgttaaatggcttgctt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4413 Dimer_Tnp_hAT zf-BED

Protein Analysis

149

Amino Acids

16.36

Weight (kDa)

9.52

Isoelectric Point (pI)

28.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 83
AasI GACNNNNNNGTC 1 cut(s) 172
AatII GACGTC 1 cut(s) 176
Acc36I ACCTGC 1 cut(s) 83
AccB1I GGYRCC 1 cut(s) 282
AccIII TCCGGA 1 cut(s) 205
AciI CCGC 3 cut(s) 80, 220, 350
AcsI RAATTY 1 cut(s) 31
AcyI GRCGYC 1 cut(s) 173
AgsI TTSAA 3 cut(s) 28, 37, 147
AjnI CCWGG 1 cut(s) 301
AluBI AGCT 2 cut(s) 203, 246
AluI AGCT 2 cut(s) 203, 246
Alw26I GTCTC 1 cut(s) 191
Aor13HI TCCGGA 1 cut(s) 205
ApeKI GCWGC 4 cut(s) 11, 131, 352, 427
ApoI RAATTY 1 cut(s) 31
AspA2I CCTAGG 1 cut(s) 286
AspS9I GGNCC 1 cut(s) 111
AsuHPI GGTGA 2 cut(s) 107, 339
AvaII GGWCC 1 cut(s) 111
AvrII CCTAGG 1 cut(s) 286
BanI GGYRCC 1 cut(s) 282
BbsI GAAGAC 1 cut(s) 170
BbvI GCAGC 3 cut(s) 118, 364, 414
BccI CCATC 3 cut(s) 55, 203, 365
BciT130I CCWGG 1 cut(s) 303
BcoDI GTCTC 1 cut(s) 191
BfaI CTAG 1 cut(s) 287
BfuAI ACCTGC 1 cut(s) 83
BisI GCNGC 5 cut(s) 12, 132, 220, 353, 428
BlnI CCTAGG 1 cut(s) 286
BlsI GCNGC 5 cut(s) 13, 133, 221, 354, 429
Bme1390I CCNGG 1 cut(s) 303
Bme18I GGWCC 1 cut(s) 111
BmgT120I GGNCC 1 cut(s) 111
BmiI GGNNCC 3 cut(s) 48, 112, 284
BmrFI CCNGG 1 cut(s) 303
BmrI ACTGGG 1 cut(s) 16
BmsI GCATC 4 cut(s) 79, 307, 385, 404
BmuI ACTGGG 1 cut(s) 16
BpiI GAAGAC 1 cut(s) 170
BpuEI CTTGAG 3 cut(s) 170, 369, 384
BsaHI GRCGYC 1 cut(s) 173
BsaJI CCNNGG 2 cut(s) 286, 302
BsaWI WCCGGW 1 cut(s) 205
Bse118I RCCGGY 1 cut(s) 222
Bse1I ACTGG 2 cut(s) 11, 271
Bse3DI GCAATG 1 cut(s) 252
BseAI TCCGGA 1 cut(s) 205
BseBI CCWGG 1 cut(s) 303
BseDI CCNNGG 2 cut(s) 286, 302
BseGI GGATG 3 cut(s) 214, 298, 328
BseMI GCAATG 1 cut(s) 252
BseMII CTCAG 1 cut(s) 129
BseNI ACTGG 2 cut(s) 11, 271
BseRI GAGGAG 1 cut(s) 129
BseXI GCAGC 3 cut(s) 118, 364, 414
BshNI GGYRCC 1 cut(s) 282
BsiSI CCGG 2 cut(s) 206, 223
BsmAI GTCTC 1 cut(s) 191
Bsp13I TCCGGA 1 cut(s) 205
BspACI CCGC 3 cut(s) 80, 220, 350
BspCNI CTCAG 1 cut(s) 128
BspEI TCCGGA 1 cut(s) 205
BspLI GGNNCC 3 cut(s) 48, 112, 284
BspMI ACCTGC 1 cut(s) 83
BspT107I GGYRCC 1 cut(s) 282
BsrDI GCAATG 1 cut(s) 252
BsrFI RCCGGY 1 cut(s) 222
BsrI ACTGG 2 cut(s) 11, 271
BssAI RCCGGY 1 cut(s) 222
BssECI CCNNGG 2 cut(s) 286, 302
BssNI GRCGYC 1 cut(s) 173
BssT1I CCWWGG 1 cut(s) 286
Bst2UI CCWGG 1 cut(s) 303
Bst4CI ACNGT 2 cut(s) 334, 364
BstACI GRCGYC 1 cut(s) 173
BstC8I GCNNGC 1 cut(s) 444
BstDEI CTNAG 1 cut(s) 115
BstF5I GGATG 3 cut(s) 214, 298, 328
BstMAI GTCTC 1 cut(s) 191
BstMWI GCNNNNNNNGC 2 cut(s) 20, 225
BstNI CCWGG 1 cut(s) 303
BstSCI CCNGG 1 cut(s) 301
BstV1I GCAGC 3 cut(s) 118, 364, 414
BstV2I GAAGAC 1 cut(s) 170
BtsCI GGATG 3 cut(s) 214, 298, 328
BtsIMutI CAGTG 2 cut(s) 264, 360
BveI ACCTGC 1 cut(s) 83
Cac8I GCNNGC 1 cut(s) 444
Cfr10I RCCGGY 1 cut(s) 222
Cfr13I GGNCC 1 cut(s) 111
CspCI CAANNNNNGTGG 2 cut(s) 217, 252
CviAII CATG 2 cut(s) 58, 169
CviJI RGCY 7 cut(s) 11, 203, 219, 246, 355, 427, 442
CviKI_1 RGCY 7 cut(s) 11, 203, 219, 246, 355, 427, 442
DdeI CTNAG 1 cut(s) 115
DraI TTTAAA 1 cut(s) 420
DrdI GACNNNNNNGTC 1 cut(s) 172
DseDI GACNNNNNNGTC 1 cut(s) 172
Eco130I CCWWGG 1 cut(s) 286
Eco47I GGWCC 1 cut(s) 111
EcoO109I RGGNCCY 1 cut(s) 111
EcoRII CCWGG 1 cut(s) 301
EcoT14I CCWWGG 1 cut(s) 286
ErhI CCWWGG 1 cut(s) 286
FaeI CATG 2 cut(s) 61, 172
FaiI YATR 4 cut(s) 59, 170, 309, 411
FatI CATG 2 cut(s) 57, 168
Fnu4HI GCNGC 5 cut(s) 12, 132, 220, 353, 428
FokI GGATG 3 cut(s) 221, 285, 335
Fsp4HI GCNGC 5 cut(s) 12, 132, 220, 353, 428
FspBI CTAG 1 cut(s) 287
GluI GCNGC 5 cut(s) 12, 132, 220, 353, 428
HapII CCGG 2 cut(s) 206, 223
Hin1I GRCGYC 1 cut(s) 173
Hin1II CATG 2 cut(s) 61, 172
HinfI GANTC 1 cut(s) 72
HpaII CCGG 2 cut(s) 206, 223
HphI GGTGA 2 cut(s) 107, 339
Hpy166II GTNNAC 1 cut(s) 239
Hpy188I TCNGA 1 cut(s) 118
Hpy188III TCNNGA 3 cut(s) 196, 206, 370
Hpy8I GTNNAC 1 cut(s) 239
HpyAV CCTTC 3 cut(s) 34, 153, 354
HpyCH4III ACNGT 2 cut(s) 334, 364
HpyCH4IV ACGT 1 cut(s) 173
HpyCH4V TGCA 3 cut(s) 14, 92, 228
HpyF10VI GCNNNNNNNGC 2 cut(s) 20, 225
HpyF3I CTNAG 1 cut(s) 115
HpySE526I ACGT 1 cut(s) 173
Hsp92I GRCGYC 1 cut(s) 173
Hsp92II CATG 2 cut(s) 61, 172
Kpn2I TCCGGA 1 cut(s) 205
LmnI GCTCC 1 cut(s) 208
LpnPI CCDG 8 cut(s) 78, 219, 236, 252, 260, 288, 315, 355
Lsp1109I GCAGC 3 cut(s) 118, 364, 414
LweI GCATC 4 cut(s) 79, 307, 385, 404
MaeI CTAG 1 cut(s) 287
MaeII ACGT 1 cut(s) 173
MaeIII GTNAC 2 cut(s) 17, 328
MboII GAAGA 1 cut(s) 175
MluCI AATT 2 cut(s) 31, 421
MnlI CCTC 3 cut(s) 124, 150, 273
MroI TCCGGA 1 cut(s) 205
MseI TTAA 2 cut(s) 419, 435
MslI CAYNNNNRTG 1 cut(s) 87
MspI CCGG 2 cut(s) 206, 223
MspR9I CCNGG 1 cut(s) 303
MvaI CCWGG 1 cut(s) 303
MwoI GCNNNNNNNGC 2 cut(s) 20, 225
NlaIII CATG 2 cut(s) 61, 172
NlaIV GGNNCC 3 cut(s) 48, 112, 284
PaqCI CACCTGC 1 cut(s) 83
PfeI GAWTC 1 cut(s) 72
PkrI GCNGC 5 cut(s) 13, 133, 221, 354, 429
PpuMI RGGWCCY 1 cut(s) 111
Psp5II RGGWCCY 1 cut(s) 111
Psp6I CCWGG 1 cut(s) 301
PspGI CCWGG 1 cut(s) 301
PspN4I GGNNCC 3 cut(s) 48, 112, 284
PspPI GGNCC 1 cut(s) 111
PspPPI RGGWCCY 1 cut(s) 111
RseI CAYNNNNRTG 1 cut(s) 87
SaqAI TTAA 2 cut(s) 419, 435
SatI GCNGC 5 cut(s) 12, 132, 220, 353, 428
Sau96I GGNCC 1 cut(s) 111
ScrFI CCNGG 1 cut(s) 303
SetI ASST 6 cut(s) 97, 176, 205, 248, 288, 292
SfaNI GCATC 4 cut(s) 79, 307, 385, 404
SgrAI CRCCGGYG 1 cut(s) 222
SinI GGWCC 1 cut(s) 111
SmiI ATTTAAAT 1 cut(s) 420
SmiMI CAYNNNNRTG 1 cut(s) 87
SmlI CTYRAG 3 cut(s) 185, 384, 399
SmoI CTYRAG 3 cut(s) 185, 384, 399
Sse9I AATT 2 cut(s) 31, 421
SsiI CCGC 3 cut(s) 80, 220, 350
SspMI CTAG 1 cut(s) 287
StyD4I CCNGG 1 cut(s) 301
StyI CCWWGG 1 cut(s) 286
SwaI ATTTAAAT 1 cut(s) 420
TaaI ACNGT 2 cut(s) 334, 364
TaiI ACGT 1 cut(s) 176
TaqI TCGA 1 cut(s) 195
TasI AATT 2 cut(s) 31, 421
TauI GCSGC 1 cut(s) 222
TfiI GAWTC 1 cut(s) 72
Tru1I TTAA 2 cut(s) 419, 435
Tru9I TTAA 2 cut(s) 419, 435
TscAI CASTG 2 cut(s) 271, 367
TseI GCWGC 4 cut(s) 11, 131, 352, 427
TspDTI ATGAA 1 cut(s) 426
TspGWI ACGGA 1 cut(s) 166
TspRI CASTG 2 cut(s) 271, 367
VpaK11BI GGWCC 1 cut(s) 111
XapI RAATTY 1 cut(s) 31
XcmI CCANNNNNNNNNTGG 3 cut(s) 58, 64, 271
XmaJI CCTAGG 1 cut(s) 286
XspI CTAG 1 cut(s) 287
ZraI GACGTC 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.