Rmu_sc0038166.1_g000001

BED zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0038166.1
OG0009501
Physical Location & Seq
Forward (+)
31 .. 716
686 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0038166.1_g000001.1.cds

Sequence Viewer

Length: 451 bp
atggactgggctgcaagtaacgccttcaaaaatttcaaagatgtggaacccaagtccatgatggaaatgggaatcattccgcacattgatgcaggtgatattggtttggggtcctcagacaaggggaacgctgctactcctcctccttcaacaaaaccgagaaagaagaccatgacgtccgtttatctcaagtttttcgagacagctccggatggaaaaagtcgccggtgcaagttctgtggacaaagctattccattgctactgccactggcaatctggggaggcacctagggaatcggcatccagggtatgataagtcgggggatgttgttactgtttccaatccttcaccacagcccatcactgtagtcaggaagcatcaatctcaagcaaaagcatctcaagtggattatgaacatttaaattggctgctcgttaaatggcttgctt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4413 Dimer_Tnp_hAT zf-BED

Protein Analysis

150

Amino Acids

16.45

Weight (kDa)

9.52

Isoelectric Point (pI)

29.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 83
AasI GACNNNNNNGTC 1 cut(s) 175
AatII GACGTC 1 cut(s) 179
Acc36I ACCTGC 1 cut(s) 83
AccB1I GGYRCC 1 cut(s) 285
AccIII TCCGGA 1 cut(s) 208
AciI CCGC 1 cut(s) 80
AcsI RAATTY 1 cut(s) 31
AcyI GRCGYC 1 cut(s) 176
AgsI TTSAA 3 cut(s) 28, 37, 150
AjnI CCWGG 1 cut(s) 304
AluBI AGCT 2 cut(s) 206, 249
AluI AGCT 2 cut(s) 206, 249
Alw26I GTCTC 1 cut(s) 194
Aor13HI TCCGGA 1 cut(s) 208
ApeKI GCWGC 3 cut(s) 11, 131, 430
ApoI RAATTY 1 cut(s) 31
AspA2I CCTAGG 1 cut(s) 289
AspS9I GGNCC 1 cut(s) 111
AsuHPI GGTGA 2 cut(s) 107, 342
AvaII GGWCC 1 cut(s) 111
AvrII CCTAGG 1 cut(s) 289
BanI GGYRCC 1 cut(s) 285
BbsI GAAGAC 1 cut(s) 173
BbvI GCAGC 2 cut(s) 118, 417
BccI CCATC 3 cut(s) 55, 206, 368
BciT130I CCWGG 1 cut(s) 306
BcoDI GTCTC 1 cut(s) 194
BfaI CTAG 1 cut(s) 290
BfmI CTRYAG 1 cut(s) 366
BfuAI ACCTGC 1 cut(s) 83
BisI GCNGC 3 cut(s) 12, 132, 431
BlnI CCTAGG 1 cut(s) 289
BlsI GCNGC 3 cut(s) 13, 133, 432
Bme1390I CCNGG 1 cut(s) 306
Bme18I GGWCC 1 cut(s) 111
BmgT120I GGNCC 1 cut(s) 111
BmiI GGNNCC 3 cut(s) 48, 112, 287
BmrFI CCNGG 1 cut(s) 306
BmrI ACTGGG 1 cut(s) 16
BmsI GCATC 4 cut(s) 79, 310, 388, 407
BmuI ACTGGG 1 cut(s) 16
BpiI GAAGAC 1 cut(s) 173
BpuEI CTTGAG 3 cut(s) 173, 372, 387
BsaHI GRCGYC 1 cut(s) 176
BsaJI CCNNGG 2 cut(s) 289, 305
BsaWI WCCGGW 1 cut(s) 208
BsaXI ACNNNNNCTCC 2 cut(s) 127, 157
Bse118I RCCGGY 1 cut(s) 225
Bse1I ACTGG 2 cut(s) 11, 274
Bse3DI GCAATG 1 cut(s) 255
BseAI TCCGGA 1 cut(s) 208
BseBI CCWGG 1 cut(s) 306
BseDI CCNNGG 2 cut(s) 289, 305
BseGI GGATG 3 cut(s) 217, 301, 331
BseMI GCAATG 1 cut(s) 255
BseMII CTCAG 1 cut(s) 129
BseNI ACTGG 2 cut(s) 11, 274
BseRI GAGGAG 2 cut(s) 129, 132
BseXI GCAGC 2 cut(s) 118, 417
BshNI GGYRCC 1 cut(s) 285
BsiSI CCGG 2 cut(s) 209, 226
BsmAI GTCTC 1 cut(s) 194
Bsp13I TCCGGA 1 cut(s) 208
BspACI CCGC 1 cut(s) 80
BspCNI CTCAG 1 cut(s) 128
BspEI TCCGGA 1 cut(s) 208
BspLI GGNNCC 3 cut(s) 48, 112, 287
BspMI ACCTGC 1 cut(s) 83
BspT107I GGYRCC 1 cut(s) 285
BsrDI GCAATG 1 cut(s) 255
BsrFI RCCGGY 1 cut(s) 225
BsrI ACTGG 2 cut(s) 11, 274
BssAI RCCGGY 1 cut(s) 225
BssECI CCNNGG 2 cut(s) 289, 305
BssNI GRCGYC 1 cut(s) 176
BssT1I CCWWGG 1 cut(s) 289
Bst2UI CCWGG 1 cut(s) 306
Bst4CI ACNGT 2 cut(s) 337, 367
BstACI GRCGYC 1 cut(s) 176
BstC8I GCNNGC 1 cut(s) 447
BstDEI CTNAG 1 cut(s) 115
BstF5I GGATG 3 cut(s) 217, 301, 331
BstMAI GTCTC 1 cut(s) 194
BstMWI GCNNNNNNNGC 1 cut(s) 20
BstNI CCWGG 1 cut(s) 306
BstSCI CCNGG 1 cut(s) 304
BstSFI CTRYAG 1 cut(s) 366
BstV1I GCAGC 2 cut(s) 118, 417
BstV2I GAAGAC 1 cut(s) 173
BtsCI GGATG 3 cut(s) 217, 301, 331
BtsIMutI CAGTG 2 cut(s) 267, 363
BveI ACCTGC 1 cut(s) 83
Cac8I GCNNGC 1 cut(s) 447
Cfr10I RCCGGY 1 cut(s) 225
Cfr13I GGNCC 1 cut(s) 111
CspCI CAANNNNNGTGG 2 cut(s) 220, 255
CviAII CATG 2 cut(s) 58, 172
CviJI RGCY 6 cut(s) 11, 206, 249, 358, 430, 445
CviKI_1 RGCY 6 cut(s) 11, 206, 249, 358, 430, 445
DdeI CTNAG 1 cut(s) 115
DraI TTTAAA 1 cut(s) 423
DrdI GACNNNNNNGTC 1 cut(s) 175
DseDI GACNNNNNNGTC 1 cut(s) 175
Eco130I CCWWGG 1 cut(s) 289
Eco47I GGWCC 1 cut(s) 111
EcoO109I RGGNCCY 1 cut(s) 111
EcoRII CCWGG 1 cut(s) 304
EcoT14I CCWWGG 1 cut(s) 289
ErhI CCWWGG 1 cut(s) 289
FaeI CATG 2 cut(s) 61, 175
FaiI YATR 4 cut(s) 59, 173, 312, 414
FatI CATG 2 cut(s) 57, 171
Fnu4HI GCNGC 3 cut(s) 12, 132, 431
FokI GGATG 3 cut(s) 224, 288, 338
Fsp4HI GCNGC 3 cut(s) 12, 132, 431
FspBI CTAG 1 cut(s) 290
GluI GCNGC 3 cut(s) 12, 132, 431
HapII CCGG 2 cut(s) 209, 226
Hin1I GRCGYC 1 cut(s) 176
Hin1II CATG 2 cut(s) 61, 175
HinfI GANTC 2 cut(s) 72, 295
HpaII CCGG 2 cut(s) 209, 226
HphI GGTGA 2 cut(s) 107, 342
Hpy166II GTNNAC 1 cut(s) 242
Hpy188I TCNGA 1 cut(s) 118
Hpy188III TCNNGA 3 cut(s) 199, 209, 373
Hpy8I GTNNAC 1 cut(s) 242
HpyAV CCTTC 3 cut(s) 34, 156, 357
HpyCH4III ACNGT 2 cut(s) 337, 367
HpyCH4IV ACGT 1 cut(s) 176
HpyCH4V TGCA 3 cut(s) 14, 92, 231
HpyF10VI GCNNNNNNNGC 1 cut(s) 20
HpyF3I CTNAG 1 cut(s) 115
HpySE526I ACGT 1 cut(s) 176
Hsp92I GRCGYC 1 cut(s) 176
Hsp92II CATG 2 cut(s) 61, 175
Kpn2I TCCGGA 1 cut(s) 208
LmnI GCTCC 1 cut(s) 211
LpnPI CCDG 8 cut(s) 78, 222, 239, 255, 263, 291, 318, 358
Lsp1109I GCAGC 2 cut(s) 118, 417
LweI GCATC 4 cut(s) 79, 310, 388, 407
MaeI CTAG 1 cut(s) 290
MaeII ACGT 1 cut(s) 176
MaeIII GTNAC 2 cut(s) 17, 331
MboII GAAGA 1 cut(s) 178
MluCI AATT 2 cut(s) 31, 424
MnlI CCTC 4 cut(s) 124, 150, 153, 276
MroI TCCGGA 1 cut(s) 208
MseI TTAA 2 cut(s) 422, 438
MslI CAYNNNNRTG 1 cut(s) 87
MspI CCGG 2 cut(s) 209, 226
MspR9I CCNGG 1 cut(s) 306
MvaI CCWGG 1 cut(s) 306
MwoI GCNNNNNNNGC 1 cut(s) 20
NlaIII CATG 2 cut(s) 61, 175
NlaIV GGNNCC 3 cut(s) 48, 112, 287
PaqCI CACCTGC 1 cut(s) 83
PfeI GAWTC 2 cut(s) 72, 295
PkrI GCNGC 3 cut(s) 13, 133, 432
PpuMI RGGWCCY 1 cut(s) 111
Psp5II RGGWCCY 1 cut(s) 111
Psp6I CCWGG 1 cut(s) 304
PspGI CCWGG 1 cut(s) 304
PspN4I GGNNCC 3 cut(s) 48, 112, 287
PspPI GGNCC 1 cut(s) 111
PspPPI RGGWCCY 1 cut(s) 111
RseI CAYNNNNRTG 1 cut(s) 87
SaqAI TTAA 2 cut(s) 422, 438
SatI GCNGC 3 cut(s) 12, 132, 431
Sau96I GGNCC 1 cut(s) 111
ScrFI CCNGG 1 cut(s) 306
SetI ASST 5 cut(s) 97, 179, 208, 251, 291
SfaNI GCATC 4 cut(s) 79, 310, 388, 407
SfcI CTRYAG 1 cut(s) 366
SgrAI CRCCGGYG 1 cut(s) 225
SinI GGWCC 1 cut(s) 111
SmiI ATTTAAAT 1 cut(s) 423
SmiMI CAYNNNNRTG 1 cut(s) 87
SmlI CTYRAG 3 cut(s) 188, 387, 402
SmoI CTYRAG 3 cut(s) 188, 387, 402
Sse9I AATT 2 cut(s) 31, 424
SsiI CCGC 1 cut(s) 80
SspMI CTAG 1 cut(s) 290
StyD4I CCNGG 1 cut(s) 304
StyI CCWWGG 1 cut(s) 289
SwaI ATTTAAAT 1 cut(s) 423
TaaI ACNGT 2 cut(s) 337, 367
TaiI ACGT 1 cut(s) 179
TaqI TCGA 1 cut(s) 198
TasI AATT 2 cut(s) 31, 424
TfiI GAWTC 2 cut(s) 72, 295
Tru1I TTAA 2 cut(s) 422, 438
Tru9I TTAA 2 cut(s) 422, 438
TscAI CASTG 2 cut(s) 274, 370
TseI GCWGC 3 cut(s) 11, 131, 430
TspDTI ATGAA 1 cut(s) 429
TspGWI ACGGA 1 cut(s) 169
TspRI CASTG 2 cut(s) 274, 370
VpaK11BI GGWCC 1 cut(s) 111
XapI RAATTY 1 cut(s) 31
XcmI CCANNNNNNNNNTGG 3 cut(s) 58, 64, 274
XmaJI CCTAGG 1 cut(s) 289
XspI CTAG 1 cut(s) 290
ZraI GACGTC 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.