BED zinc finger
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G18560 |
| fragaria_vesca | FvH4_5g12801 FvH4_5g12801 FvH4_5g12801 FvH4_5g12801 FvH4_5g12801 |
| malus_domestica | MD06G1210000.v1.1 MD14G1220900.v1.1 |
| prunus_persica | Prupe.5G216200_v2.0.a1 Prupe.5G216200_v2.0.a1 |
| pyrus_communis | pycom06g18760 pycom06g18770 pycom14g18280 |
| rosa_chinensis | RchiOBHm_Chr7g0184431 |
| rosa_multiflora | Rmu_sc0038166.1_g000001 Rmu_sc0039138.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00269620 |
| rosa_samantha | Rh7AG080000 Rh7BG067200 Rh7CG067500 Rh7DG067200 |
| rosa_wichuraiana | Rw7G005530 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 489 |
| AarI | CACCTGC | 1 cut(s) | 207 |
| Acc36I | ACCTGC | 1 cut(s) | 207 |
| AccB1I | GGYRCC | 3 cut(s) | 276, 746, 1804 |
| AccBSI | CCGCTC | 2 cut(s) | 1083, 1957 |
| AciI | CCGC | 5 cut(s) | 1083, 1437, 1852, 1865, 1957 |
| AclWI | GGATC | 2 cut(s) | 1308, 1442 |
| AcsI | RAATTY | 4 cut(s) | 626, 648, 1495, 1839 |
| AcuI | CTGAAG | 3 cut(s) | 123, 1830, 1946 |
| AcvI | CACGTG | 1 cut(s) | 669 |
| AfaI | GTAC | 3 cut(s) | 533, 788, 1045 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 743, 772, 1277, 1278 |
| AflIII | ACRYGT | 2 cut(s) | 595, 1251 |
| AgsI | TTSAA | 4 cut(s) | 37, 606, 626, 910 |
| AhlI | ACTAGT | 1 cut(s) | 1562 |
| AjnI | CCWGG | 2 cut(s) | 1035, 2005 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 73, 105 |
| Alw21I | GWGCWC | 5 cut(s) | 113, 1184, 1259, 1579, 1671 |
| Alw26I | GTCTC | 5 cut(s) | 185, 616, 1148, 1307, 1609 |
| Alw44I | GTGCAC | 1 cut(s) | 1255 |
| AlwI | GGATC | 2 cut(s) | 1308, 1442 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 200 |
| Ama87I | CYCGRG | 1 cut(s) | 1770 |
| AoxI | GGCC | 1 cut(s) | 872 |
| ApaI | GGGCCC | 1 cut(s) | 876 |
| ApaLI | GTGCAC | 1 cut(s) | 1255 |
| ApeKI | GCWGC | 7 cut(s) | 197, 1028, 1174, 1322, 1367, 1849, 1982 |
| ApoI | RAATTY | 4 cut(s) | 626, 648, 1495, 1839 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1497, 1534 |
| AspLEI | GCGC | 2 cut(s) | 1658, 1746 |
| AspS9I | GGNCC | 2 cut(s) | 872, 873 |
| AsuC2I | CCSGG | 1 cut(s) | 297 |
| AsuHPI | GGTGA | 5 cut(s) | 316, 326, 1331, 1337, 1844 |
| AsuNHI | GCTAGC | 1 cut(s) | 475 |
| AvaI | CYCGRG | 1 cut(s) | 1770 |
| BaeGI | GKGCMC | 2 cut(s) | 876, 1259 |
| BanI | GGYRCC | 3 cut(s) | 276, 746, 1804 |
| BanII | GRGCYC | 5 cut(s) | 75, 113, 876, 1184, 1671 |
| BbrPI | CACGTG | 1 cut(s) | 669 |
| BbsI | GAAGAC | 1 cut(s) | 164 |
| Bbv12I | GWGCWC | 5 cut(s) | 113, 1184, 1259, 1579, 1671 |
| BbvI | GCAGC | 7 cut(s) | 184, 1040, 1161, 1309, 1354, 1861, 1994 |
| BceAI | ACGGC | 2 cut(s) | 931, 1769 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 179, 213, 1249, 1283 |
| BciT130I | CCWGG | 2 cut(s) | 1037, 2007 |
| BciVI | GTATCC | 1 cut(s) | 1562 |
| BclI | TGATCA | 1 cut(s) | 915 |
| BcnI | CCSGG | 1 cut(s) | 297 |
| BcoDI | GTCTC | 5 cut(s) | 185, 616, 1148, 1307, 1609 |
| BcuI | ACTAGT | 1 cut(s) | 1562 |
| BfaI | CTAG | 6 cut(s) | 476, 767, 1100, 1160, 1563, 1586 |
| BfmI | CTRYAG | 5 cut(s) | 93, 351, 1185, 1980, 1986 |
| BfuAI | ACCTGC | 1 cut(s) | 207 |
| BfuI | GTATCC | 1 cut(s) | 1562 |
| BglII | AGATCT | 1 cut(s) | 753 |
| BisI | GCNGC | 9 cut(s) | 198, 1029, 1084, 1175, 1323, 1368, 1850, 1865, 1983 |
| BlpI | GCTNAGC | 1 cut(s) | 1178 |
| BlsI | GCNGC | 9 cut(s) | 199, 1030, 1085, 1176, 1324, 1369, 1851, 1866, 1984 |
| Bme1390I | CCNGG | 3 cut(s) | 297, 1037, 2007 |
| BmeT110I | CYCGRG | 1 cut(s) | 1770 |
| BmgT120I | GGNCC | 2 cut(s) | 872, 873 |
| BmiI | GGNNCC | 8 cut(s) | 48, 278, 748, 873, 874, 1689, 1698, 1806 |
| BmrFI | CCNGG | 3 cut(s) | 297, 1037, 2007 |
| BmrI | ACTGGG | 1 cut(s) | 16 |
| BmsI | GCATC | 7 cut(s) | 593, 699, 998, 1123, 1161, 1222, 1586 |
| BmtI | GCTAGC | 1 cut(s) | 479 |
| BmuI | ACTGGG | 1 cut(s) | 16 |
| BpiI | GAAGAC | 1 cut(s) | 164 |
| BpmI | CTGGAG | 1 cut(s) | 435 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1178 |
| BpuEI | CTTGAG | 2 cut(s) | 164, 1563 |
| BpuMI | CCSGG | 1 cut(s) | 297 |
| Bsa29I | ATCGAT | 1 cut(s) | 1216 |
| BsaAI | YACGTR | 2 cut(s) | 669, 853 |
| BsaI | GGTCTC | 1 cut(s) | 616 |
| BsaJI | CCNNGG | 1 cut(s) | 1751 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 743, 772, 1277, 1278 |
| Bse1I | ACTGG | 3 cut(s) | 11, 265, 327 |
| Bse3DI | GCAATG | 1 cut(s) | 1606 |
| BseBI | CCWGG | 2 cut(s) | 1037, 2007 |
| BseCI | ATCGAT | 1 cut(s) | 1216 |
| BseDI | CCNNGG | 1 cut(s) | 1751 |
| BseGI | GGATG | 8 cut(s) | 292, 862, 989, 1138, 1176, 1553, 1601, 1923 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 743, 772, 1277, 1278 |
| BseMI | GCAATG | 1 cut(s) | 1606 |
| BseMII | CTCAG | 7 cut(s) | 129, 996, 1008, 1169, 1302, 1467, 2004 |
| BseNI | ACTGG | 3 cut(s) | 11, 265, 327 |
| BseRI | GAGGAG | 2 cut(s) | 103, 542 |
| BseSI | GKGCMC | 2 cut(s) | 876, 1259 |
| BseXI | GCAGC | 7 cut(s) | 184, 1040, 1161, 1309, 1354, 1861, 1994 |
| BsgI | GTGCAG | 1 cut(s) | 1808 |
| BshFI | GGCC | 1 cut(s) | 874 |
| BshNI | GGYRCC | 3 cut(s) | 276, 746, 1804 |
| BshVI | ATCGAT | 1 cut(s) | 1216 |
| BsiHKAI | GWGCWC | 5 cut(s) | 113, 1184, 1259, 1579, 1671 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1770 |
| BsiSI | CCGG | 2 cut(s) | 297, 1694 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 743, 772, 1277, 1278 |
| BsmAI | GTCTC | 5 cut(s) | 185, 616, 1148, 1307, 1609 |
| BsmBI | CGTCTC | 1 cut(s) | 1148 |
| BsmI | GAATGC | 1 cut(s) | 1201 |
| BsnI | GGCC | 1 cut(s) | 874 |
| Bso31I | GGTCTC | 1 cut(s) | 616 |
| BsoBI | CYCGRG | 1 cut(s) | 1770 |
| Bsp120I | GGGCCC | 1 cut(s) | 872 |
| Bsp1286I | GDGCHC | 7 cut(s) | 75, 113, 876, 1184, 1259, 1579, 1671 |
| Bsp1407I | TGTACA | 1 cut(s) | 786 |
| Bsp143I | GATC | 5 cut(s) | 753, 915, 951, 1300, 1447 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1178 |
| BspACI | CCGC | 5 cut(s) | 1083, 1437, 1852, 1865, 1957 |
| BspANI | GGCC | 1 cut(s) | 874 |
| BspCNI | CTCAG | 7 cut(s) | 128, 997, 1007, 1170, 1303, 1468, 2005 |
| BspDI | ATCGAT | 1 cut(s) | 1216 |
| BspHI | TCATGA | 1 cut(s) | 547 |
| BspLI | GGNNCC | 8 cut(s) | 48, 278, 748, 873, 874, 1689, 1698, 1806 |
| BspMAI | CTGCAG | 2 cut(s) | 1189, 1984 |
| BspMI | ACCTGC | 1 cut(s) | 207 |
| BspOI | GCTAGC | 1 cut(s) | 479 |
| BspPI | GGATC | 2 cut(s) | 1308, 1442 |
| BspT107I | GGYRCC | 3 cut(s) | 276, 746, 1804 |
| BspTNI | GGTCTC | 1 cut(s) | 616 |
| BsrBI | CCGCTC | 2 cut(s) | 1083, 1957 |
| BsrDI | GCAATG | 1 cut(s) | 1606 |
| BsrGI | TGTACA | 1 cut(s) | 786 |
| BsrI | ACTGG | 3 cut(s) | 11, 265, 327 |
| BssECI | CCNNGG | 1 cut(s) | 1751 |
| BssMI | GATC | 5 cut(s) | 753, 915, 951, 1300, 1447 |
| Bst2UI | CCWGG | 2 cut(s) | 1037, 2007 |
| Bst4CI | ACNGT | 5 cut(s) | 352, 1077, 1276, 1574, 1818 |
| Bst6I | CTCTTC | 1 cut(s) | 1584 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1979 |
| BstAUI | TGTACA | 1 cut(s) | 786 |
| BstBAI | YACGTR | 2 cut(s) | 669, 853 |
| BstC8I | GCNNGC | 3 cut(s) | 477, 1327, 1791 |
| BstDSI | CCRYGG | 1 cut(s) | 1751 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 770 |
| BstF5I | GGATG | 8 cut(s) | 292, 862, 989, 1138, 1176, 1553, 1601, 1923 |
| BstHHI | GCGC | 2 cut(s) | 1658, 1746 |
| BstKTI | GATC | 5 cut(s) | 756, 918, 954, 1303, 1450 |
| BstMAI | GTCTC | 5 cut(s) | 185, 616, 1148, 1307, 1609 |
| BstMBI | GATC | 5 cut(s) | 753, 915, 951, 1300, 1447 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 20, 1703, 1790, 1979, 1988 |
| BstNI | CCWGG | 2 cut(s) | 1037, 2007 |
| BstNSI | RCATGY | 2 cut(s) | 599, 1255 |
| BstSCI | CCNGG | 3 cut(s) | 295, 1035, 2005 |
| BstSFI | CTRYAG | 5 cut(s) | 93, 351, 1185, 1980, 1986 |
| BstSLI | GKGCMC | 2 cut(s) | 876, 1259 |
| BstV1I | GCAGC | 7 cut(s) | 184, 1040, 1161, 1309, 1354, 1861, 1994 |
| BstV2I | GAAGAC | 1 cut(s) | 164 |
| BstX2I | RGATCY | 1 cut(s) | 753 |
| BstYI | RGATCY | 1 cut(s) | 753 |
| Bsu15I | ATCGAT | 1 cut(s) | 1216 |
| BsuI | GTATCC | 1 cut(s) | 1562 |
| BsuRI | GGCC | 1 cut(s) | 874 |
| BsuTUI | ATCGAT | 1 cut(s) | 1216 |
| BtgI | CCRYGG | 1 cut(s) | 1751 |
| BtsCI | GGATG | 8 cut(s) | 292, 862, 989, 1138, 1176, 1553, 1601, 1923 |
| BtsI | GCAGTG | 1 cut(s) | 1791 |
| BtsIMutI | CAGTG | 6 cut(s) | 258, 348, 1272, 1579, 1791, 1806 |
| BveI | ACCTGC | 1 cut(s) | 207 |
| Cac8I | GCNNGC | 3 cut(s) | 477, 1327, 1791 |
| CaiI | CAGNNNCTG | 1 cut(s) | 200 |
| CciI | TCATGA | 1 cut(s) | 547 |
| CfoI | GCGC | 2 cut(s) | 1658, 1746 |
| Cfr13I | GGNCC | 2 cut(s) | 872, 873 |
| ClaI | ATCGAT | 1 cut(s) | 1216 |
| CseI | GACGC | 1 cut(s) | 1165 |
| Csp6I | GTAC | 3 cut(s) | 532, 787, 1044 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 211, 246 |
| CviQI | GTAC | 3 cut(s) | 532, 787, 1044 |
| DpnI | GATC | 5 cut(s) | 755, 917, 953, 1302, 1449 |
| DpnII | GATC | 5 cut(s) | 753, 915, 951, 1300, 1447 |
| DraI | TTTAAA | 3 cut(s) | 28, 408, 498 |
| Eam1104I | CTCTTC | 1 cut(s) | 1584 |
| EarI | CTCTTC | 1 cut(s) | 1584 |
| Ecl136II | GAGCTC | 3 cut(s) | 111, 1182, 1669 |
| Eco24I | GRGCYC | 5 cut(s) | 75, 113, 876, 1184, 1671 |
| Eco31I | GGTCTC | 1 cut(s) | 616 |
| Eco32I | GATATC | 2 cut(s) | 718, 1220 |
| Eco53kI | GAGCTC | 3 cut(s) | 111, 1182, 1669 |
| Eco57I | CTGAAG | 3 cut(s) | 123, 1830, 1946 |
| Eco72I | CACGTG | 1 cut(s) | 669 |
| Eco88I | CYCGRG | 1 cut(s) | 1770 |
| EcoICRI | GAGCTC | 3 cut(s) | 111, 1182, 1669 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 770 |
| EcoO109I | RGGNCCY | 2 cut(s) | 872, 873 |
| EcoRII | CCWGG | 2 cut(s) | 1035, 2005 |
| EcoRV | GATATC | 2 cut(s) | 718, 1220 |
| EcoT22I | ATGCAT | 2 cut(s) | 846, 991 |
| EcoT38I | GRGCYC | 5 cut(s) | 75, 113, 876, 1184, 1671 |
| Esp3I | CGTCTC | 1 cut(s) | 1148 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 571, 603, 1872, 1904 |
| FauNDI | CATATG | 1 cut(s) | 640 |
| FbaI | TGATCA | 1 cut(s) | 915 |
| Fnu4HI | GCNGC | 9 cut(s) | 198, 1029, 1084, 1175, 1323, 1368, 1850, 1865, 1983 |
| FokI | GGATG | 8 cut(s) | 279, 869, 976, 1145, 1183, 1540, 1608, 1930 |
| FriOI | GRGCYC | 5 cut(s) | 75, 113, 876, 1184, 1671 |
| Fsp4HI | GCNGC | 9 cut(s) | 198, 1029, 1084, 1175, 1323, 1368, 1850, 1865, 1983 |
| FspBI | CTAG | 6 cut(s) | 476, 767, 1100, 1160, 1563, 1586 |
| GlaI | GCGC | 2 cut(s) | 1657, 1745 |
| GluI | GCNGC | 9 cut(s) | 198, 1029, 1084, 1175, 1323, 1368, 1850, 1865, 1983 |
| GsuI | CTGGAG | 1 cut(s) | 435 |
| HaeIII | GGCC | 1 cut(s) | 874 |
| HapII | CCGG | 2 cut(s) | 297, 1694 |
| HgaI | GACGC | 1 cut(s) | 1165 |
| HhaI | GCGC | 2 cut(s) | 1658, 1746 |
| Hin6I | GCGC | 2 cut(s) | 1656, 1744 |
| HinP1I | GCGC | 2 cut(s) | 1656, 1744 |
| HinfI | GANTC | 6 cut(s) | 89, 804, 961, 1334, 1455, 1543 |
| HpaII | CCGG | 2 cut(s) | 297, 1694 |
| HphI | GGTGA | 5 cut(s) | 316, 326, 1331, 1337, 1844 |
| Hpy166II | GTNNAC | 2 cut(s) | 233, 1257 |
| Hpy188I | TCNGA | 8 cut(s) | 118, 864, 997, 1006, 1312, 1687, 1764, 2014 |
| Hpy8I | GTNNAC | 2 cut(s) | 233, 1257 |
| Hpy99I | CGWCG | 2 cut(s) | 1508, 1543 |
| HpyCH4III | ACNGT | 5 cut(s) | 352, 1077, 1276, 1574, 1818 |
| HpyCH4IV | ACGT | 2 cut(s) | 668, 852 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 20, 1703, 1790, 1979, 1988 |
| HpySE526I | ACGT | 2 cut(s) | 668, 852 |
| HspAI | GCGC | 2 cut(s) | 1656, 1744 |
| Ksp22I | TGATCA | 1 cut(s) | 915 |
| Kzo9I | GATC | 5 cut(s) | 753, 915, 951, 1300, 1447 |
| LmnI | GCTCC | 4 cut(s) | 116, 1080, 1687, 1702 |
| Lsp1109I | GCAGC | 7 cut(s) | 184, 1040, 1161, 1309, 1354, 1861, 1994 |
| LweI | GCATC | 7 cut(s) | 593, 699, 998, 1123, 1161, 1222, 1586 |
| MaeI | CTAG | 6 cut(s) | 476, 767, 1100, 1160, 1563, 1586 |
| MaeII | ACGT | 2 cut(s) | 668, 852 |
| MaeIII | GTNAC | 5 cut(s) | 322, 664, 722, 848, 1397 |
| MalI | GATC | 5 cut(s) | 755, 917, 953, 1302, 1449 |
| MbiI | CCGCTC | 2 cut(s) | 1083, 1957 |
| MboI | GATC | 5 cut(s) | 753, 915, 951, 1300, 1447 |
| MboII | GAAGA | 9 cut(s) | 169, 476, 594, 970, 1204, 1285, 1601, 1823, 2029 |
| MfeI | CAATTG | 1 cut(s) | 1317 |
| MflI | RGATCY | 1 cut(s) | 753 |
| MhlI | GDGCHC | 7 cut(s) | 75, 113, 876, 1184, 1259, 1579, 1671 |
| MlyI | GAGTC | 2 cut(s) | 813, 1552 |
| MmeI | TCCRAC | 2 cut(s) | 104, 1665 |
| Mph1103I | ATGCAT | 2 cut(s) | 846, 991 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1497, 1534 |
| MseI | TTAA | 6 cut(s) | 27, 407, 423, 497, 983, 1358 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1430 |
| MspA1I | CMGCKG | 3 cut(s) | 197, 1852, 1991 |
| MspI | CCGG | 2 cut(s) | 297, 1694 |
| MspR9I | CCNGG | 3 cut(s) | 297, 1037, 2007 |
| MunI | CAATTG | 1 cut(s) | 1317 |
| Mva1269I | GAATGC | 1 cut(s) | 1201 |
| MvaI | CCWGG | 2 cut(s) | 1037, 2007 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 20, 1703, 1790, 1979, 1988 |
| NciI | CCSGG | 1 cut(s) | 297 |
| NdeI | CATATG | 1 cut(s) | 640 |
| NdeII | GATC | 5 cut(s) | 753, 915, 951, 1300, 1447 |
| NheI | GCTAGC | 1 cut(s) | 475 |
| NlaIV | GGNNCC | 8 cut(s) | 48, 278, 748, 873, 874, 1689, 1698, 1806 |
| NmeAIII | GCCGAG | 1 cut(s) | 775 |
| NmuCI | GTSAC | 3 cut(s) | 322, 664, 722 |
| NsiI | ATGCAT | 2 cut(s) | 846, 991 |
| NspI | RCATGY | 2 cut(s) | 599, 1255 |
| PagI | TCATGA | 1 cut(s) | 547 |
| PaqCI | CACCTGC | 1 cut(s) | 207 |
| PciI | ACATGT | 2 cut(s) | 595, 1251 |
| PctI | GAATGC | 1 cut(s) | 1201 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1497, 1534 |
| PfeI | GAWTC | 4 cut(s) | 89, 961, 1334, 1455 |
| PkrI | GCNGC | 9 cut(s) | 199, 1030, 1085, 1176, 1324, 1369, 1851, 1866, 1984 |
| PleI | GAGTC | 2 cut(s) | 812, 1551 |
| PmaCI | CACGTG | 1 cut(s) | 669 |
| PmlI | CACGTG | 1 cut(s) | 669 |
| PpsI | GAGTC | 2 cut(s) | 812, 1551 |
| Ppu21I | YACGTR | 2 cut(s) | 669, 853 |
| PscI | ACATGT | 2 cut(s) | 595, 1251 |
| PsiI | TTATAA | 1 cut(s) | 489 |
| Psp124BI | GAGCTC | 3 cut(s) | 113, 1184, 1671 |
| Psp6I | CCWGG | 2 cut(s) | 1035, 2005 |
| PspCI | CACGTG | 1 cut(s) | 669 |
| PspGI | CCWGG | 2 cut(s) | 1035, 2005 |
| PspN4I | GGNNCC | 8 cut(s) | 48, 278, 748, 873, 874, 1689, 1698, 1806 |
| PspOMI | GGGCCC | 1 cut(s) | 872 |
| PspPI | GGNCC | 2 cut(s) | 872, 873 |
| PstI | CTGCAG | 2 cut(s) | 1189, 1984 |
| PstNI | CAGNNNCTG | 1 cut(s) | 200 |
| PsuI | RGATCY | 1 cut(s) | 753 |
| PvuII | CAGCTG | 2 cut(s) | 197, 1991 |
| RsaI | GTAC | 3 cut(s) | 533, 788, 1045 |
| RsaNI | GTAC | 3 cut(s) | 532, 787, 1044 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1430 |
| SacI | GAGCTC | 3 cut(s) | 113, 1184, 1671 |
| SaqAI | TTAA | 6 cut(s) | 27, 407, 423, 497, 983, 1358 |
| SatI | GCNGC | 9 cut(s) | 198, 1029, 1084, 1175, 1323, 1368, 1850, 1865, 1983 |
| Sau3AI | GATC | 5 cut(s) | 753, 915, 951, 1300, 1447 |
| Sau96I | GGNCC | 2 cut(s) | 872, 873 |
| SchI | GAGTC | 2 cut(s) | 813, 1552 |
| ScrFI | CCNGG | 3 cut(s) | 297, 1037, 2007 |
| SduI | GDGCHC | 7 cut(s) | 75, 113, 876, 1184, 1259, 1579, 1671 |
| SfaNI | GCATC | 7 cut(s) | 593, 699, 998, 1123, 1161, 1222, 1586 |
| SfcI | CTRYAG | 5 cut(s) | 93, 351, 1185, 1980, 1986 |
| SmiI | ATTTAAAT | 1 cut(s) | 408 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1430 |
| SmlI | CTYRAG | 2 cut(s) | 179, 1578 |
| SmoI | CTYRAG | 2 cut(s) | 179, 1578 |
| SpeI | ACTAGT | 1 cut(s) | 1562 |
| SsiI | CCGC | 5 cut(s) | 1083, 1437, 1852, 1865, 1957 |
| SspMI | CTAG | 6 cut(s) | 476, 767, 1100, 1160, 1563, 1586 |
| SstI | GAGCTC | 3 cut(s) | 113, 1184, 1671 |
| StyD4I | CCNGG | 3 cut(s) | 295, 1035, 2005 |
| SwaI | ATTTAAAT | 1 cut(s) | 408 |
| TaaI | ACNGT | 5 cut(s) | 352, 1077, 1276, 1574, 1818 |
| TaiI | ACGT | 2 cut(s) | 671, 855 |
| TaqI | TCGA | 7 cut(s) | 189, 956, 964, 1216, 1453, 1503, 1538 |
| TatI | WGTACW | 3 cut(s) | 531, 786, 1043 |
| TauI | GCSGC | 2 cut(s) | 1086, 1867 |
| TfiI | GAWTC | 4 cut(s) | 89, 961, 1334, 1455 |
| Tru1I | TTAA | 6 cut(s) | 27, 407, 423, 497, 983, 1358 |
| Tru9I | TTAA | 6 cut(s) | 27, 407, 423, 497, 983, 1358 |
| TscAI | CASTG | 6 cut(s) | 265, 355, 1279, 1579, 1791, 1806 |
| TseFI | GTSAC | 3 cut(s) | 322, 664, 722 |
| TseI | GCWGC | 7 cut(s) | 197, 1028, 1174, 1322, 1367, 1849, 1982 |
| Tsp45I | GTSAC | 3 cut(s) | 322, 664, 722 |
| TspDTI | ATGAA | 8 cut(s) | 536, 564, 581, 627, 1285, 1513, 1851, 1934 |
| TspRI | CASTG | 6 cut(s) | 265, 355, 1279, 1579, 1791, 1806 |
| VneI | GTGCAC | 1 cut(s) | 1255 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 770 |
| XapI | RAATTY | 4 cut(s) | 626, 648, 1495, 1839 |
| XceI | RCATGY | 2 cut(s) | 599, 1255 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 58, 265, 1279 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1497, 1534 |
| XspI | CTAG | 6 cut(s) | 476, 767, 1100, 1160, 1563, 1586 |
| Zsp2I | ATGCAT | 2 cut(s) | 846, 991 |