Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0009501

Physical Location & Seq

Genomic Coordinates Forward (+)

22373408 .. 22374519

Gene Structure 1112 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g18770.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGCCGCTTGATACATCAATGCGGTGGAGTGGAAATTATCAGATGCTAGATATTGTATGCAAGGCTTCGAAGTCCATGGATGCTGTTATCAGGAAGTATGAGACACTAGGCAGTAGGATGCTGCTGAGCTCTGTAGAGAAGAATGCAGTCAGTCATGTGCACCGATATCTCGAACCATTCTACAAAACCACAAACAACATGTGCACAGACAAGCTTCCCACTGTCGGGCTGGTTCTCTTCTTTATGGATCACATTTCCGAGACAATCGCTGCTTGCAGAGACTCTCACCTTTACCCAGAATCGTTAAAGAATGCCGCTAAAGAAATGGCTGAAAAGGTGAGAGGTTACAATAGCCAGGTCTGCAACATAATCATATACATGACAGCGATTCTTGATCCTCGAATCAAAGGAGAGCTATTTCCCGAAAGCCTCAACTCGGATAATTTTCTTGACGAAGCAAGAACTCATTTCATCAGAAACTACTCGACCACGCATTTCCCATCCATAGCTGGTGGATACAGTGCTCAAGAAATGGACGAGGGATGCAATGTCTCGTTTGCAGAGGAAATCGCACGAAAGAAACGAAGGGCAAACATGAGCAGCGCAACGGATGAGCTCACTCAATACCTGTCAGAGCCTCCAGCTCCACTAGCAACAGATGTTCTGGAGTGGTGGAAAGTCAATAGTATGCGTTATCCACGGCTTTCTCTGATGGCTCGGGATTTCTTAGCTGTGCAGGCAGTTGCAGTGGCGCCGGAAGAACTGTTTTGCGGCAAGGGTGACGAAATTTACAAGCAACGATTCTGTATGCCGCACGGCAGCACACAAACTCTCCTTTGCATAAGGTCGTGGCTTCAGAGTGGGATGAAAATGAAGTACAAATCAACTGAAATAGATTTTGAGCGGTTGATGGAATTGGCAACAAGTGCTGCTGTTGCTGATAATAGTGCTCATGGCTCTGAGAAGAAACCGAAACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4413 Dimer_Tnp_hAT zf-BED

Protein Analysis

327

Amino Acids

36.98

Weight (kDa)

6.76

Isoelectric Point (pI)

43.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18560
fragaria_vesca	FvH4_5g12801 FvH4_5g12801 FvH4_5g12801 FvH4_5g12801 FvH4_5g12801
malus_domestica	MD06G1210000.v1.1 MD14G1220900.v1.1
prunus_persica	Prupe.5G216200_v2.0.a1 Prupe.5G216200_v2.0.a1
pyrus_communis	pycom06g18760 pycom06g18770 pycom14g18280
rosa_chinensis	RchiOBHm_Chr7g0184431
rosa_multiflora	Rmu_sc0038166.1_g000001 Rmu_sc0039138.1_g000001
rosa_roxburghii	Rroxscaffold_3G00269620
rosa_samantha	Rh7AG080000 Rh7BG067200 Rh7CG067500 Rh7DG067200
rosa_wichuraiana	Rw7G005530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	751
AccBSI	CCGCTC	1 cut(s)	904
AciI	CCGC	6 cut(s)	5, 22, 315, 771, 812, 904
AclWI	GGATC	2 cut(s)	255, 389
AcsI	RAATTY	1 cut(s)	786
AcuI	CTGAAG	1 cut(s)	839
AcyI	GRCGYC	1 cut(s)	752
AfaI	GTAC	1 cut(s)	878
AfiI	CCNNNNNNNGG	3 cut(s)	224, 225, 436
AflIII	ACRYGT	1 cut(s)	198
AjnI	CCWGG	1 cut(s)	354
AluBI	AGCT	7 cut(s)	129, 214, 415, 509, 616, 644, 731
AluI	AGCT	7 cut(s)	129, 214, 415, 509, 616, 644, 731
Alw21I	GWGCWC	6 cut(s)	131, 162, 206, 526, 618, 952
Alw26I	GTCTC	4 cut(s)	95, 254, 273, 556
Alw44I	GTGCAC	2 cut(s)	158, 202
AlwI	GGATC	2 cut(s)	255, 389
Ama87I	CYCGRG	1 cut(s)	717
ApaLI	GTGCAC	2 cut(s)	158, 202
ApeKI	GCWGC	5 cut(s)	121, 269, 600, 819, 929
ApoI	RAATTY	1 cut(s)	786
AspLEI	GCGC	2 cut(s)	605, 754
AsuHPI	GGTGA	3 cut(s)	278, 349, 791
AsuII	TTCGAA	1 cut(s)	68
AvaI	CYCGRG	1 cut(s)	717
BaeGI	GKGCMC	2 cut(s)	162, 206
BanI	GGYRCC	1 cut(s)	751
BanII	GRGCYC	2 cut(s)	131, 618
Bbv12I	GWGCWC	6 cut(s)	131, 162, 206, 526, 618, 952
BbvI	GCAGC	5 cut(s)	108, 256, 612, 831, 916
BccI	CCATC	3 cut(s)	508, 706, 904
BceAI	ACGGC	2 cut(s)	716, 832
BciT130I	CCWGG	1 cut(s)	356
BciVI	GTATCC	1 cut(s)	509
BcoDI	GTCTC	4 cut(s)	95, 254, 273, 556
BfaI	CTAG	3 cut(s)	47, 107, 650
BfmI	CTRYAG	1 cut(s)	132
BfoI	RGCGCY	1 cut(s)	755
BfuI	GTATCC	1 cut(s)	509
BisI	GCNGC	9 cut(s)	5, 122, 270, 315, 601, 772, 812, 820, 930
BlpI	GCTNAGC	1 cut(s)	125
BlsI	GCNGC	9 cut(s)	6, 123, 271, 316, 602, 773, 813, 821, 931
Bme1390I	CCNGG	1 cut(s)	356
BmeT110I	CYCGRG	1 cut(s)	717
BmiI	GGNNCC	1 cut(s)	753
BmrFI	CCNGG	1 cut(s)	356
BmsI	GCATC	4 cut(s)	33, 70, 108, 533
BpmI	CTGGAG	2 cut(s)	624, 686
Bpu1102I	GCTNAGC	1 cut(s)	125
Bpu14I	TTCGAA	1 cut(s)	68
BpuEI	CTTGAG	1 cut(s)	510
BsaHI	GRCGYC	1 cut(s)	752
BsaJI	CCNNGG	2 cut(s)	75, 698
BsaXI	ACNNNNNCTCC	2 cut(s)	816, 846
Bsc4I	CCNNNNNNNGG	3 cut(s)	224, 225, 436
Bse3DI	GCAATG	1 cut(s)	553
BseBI	CCWGG	1 cut(s)	356
BseDI	CCNNGG	2 cut(s)	75, 698
BseGI	GGATG	6 cut(s)	85, 123, 500, 548, 616, 870
BseLI	CCNNNNNNNGG	3 cut(s)	224, 225, 436
BseMI	GCAATG	1 cut(s)	553
BseMII	CTCAG	2 cut(s)	116, 951
BseSI	GKGCMC	2 cut(s)	162, 206
BseXI	GCAGC	5 cut(s)	108, 256, 612, 831, 916
BsgI	GTGCAG	1 cut(s)	755
BshNI	GGYRCC	1 cut(s)	751
BsiHKAI	GWGCWC	6 cut(s)	131, 162, 206, 526, 618, 952
BsiHKCI	CYCGRG	1 cut(s)	717
BsiSI	CCGG	1 cut(s)	755
BslI	CCNNNNNNNGG	3 cut(s)	224, 225, 436
BsmAI	GTCTC	4 cut(s)	95, 254, 273, 556
BsmI	GAATGC	2 cut(s)	148, 316
BsoBI	CYCGRG	1 cut(s)	717
Bsp119I	TTCGAA	1 cut(s)	68
Bsp1286I	GDGCHC	6 cut(s)	131, 162, 206, 526, 618, 952
Bsp143I	GATC	2 cut(s)	247, 394
Bsp1720I	GCTNAGC	1 cut(s)	125
Bsp19I	CCATGG	1 cut(s)	75
BspACI	CCGC	6 cut(s)	5, 22, 315, 771, 812, 904
BspCNI	CTCAG	2 cut(s)	117, 952
BspLI	GGNNCC	1 cut(s)	753
BspPI	GGATC	2 cut(s)	255, 389
BspT104I	TTCGAA	1 cut(s)	68
BspT107I	GGYRCC	1 cut(s)	751
BsrBI	CCGCTC	1 cut(s)	904
BsrDI	GCAATG	1 cut(s)	553
BssECI	CCNNGG	2 cut(s)	75, 698
BssMI	GATC	2 cut(s)	247, 394
BssNI	GRCGYC	1 cut(s)	752
BssT1I	CCWWGG	1 cut(s)	75
Bst2UI	CCWGG	1 cut(s)	356
Bst4CI	ACNGT	3 cut(s)	223, 521, 765
Bst6I	CTCTTC	1 cut(s)	242
BstACI	GRCGYC	1 cut(s)	752
BstAPI	GCANNNNNTGC	1 cut(s)	926
BstBI	TTCGAA	1 cut(s)	68
BstC8I	GCNNGC	2 cut(s)	274, 738
BstDEI	CTNAG	3 cut(s)	125, 727, 960
BstDSI	CCRYGG	2 cut(s)	75, 698
BstF5I	GGATG	6 cut(s)	85, 123, 500, 548, 616, 870
BstH2I	RGCGCY	1 cut(s)	755
BstHHI	GCGC	2 cut(s)	605, 754
BstKTI	GATC	2 cut(s)	250, 397
BstMAI	GTCTC	4 cut(s)	95, 254, 273, 556
BstMBI	GATC	2 cut(s)	247, 394
BstMWI	GCNNNNNNNGC	5 cut(s)	360, 650, 737, 926, 935
BstNI	CCWGG	1 cut(s)	356
BstNSI	RCATGY	1 cut(s)	202
BstSCI	CCNGG	1 cut(s)	354
BstSFI	CTRYAG	1 cut(s)	132
BstSLI	GKGCMC	2 cut(s)	162, 206
BstV1I	GCAGC	5 cut(s)	108, 256, 612, 831, 916
BsuI	GTATCC	1 cut(s)	509
BtgI	CCRYGG	2 cut(s)	75, 698
BtsCI	GGATG	6 cut(s)	85, 123, 500, 548, 616, 870
BtsI	GCAGTG	1 cut(s)	753
BtsIMutI	CAGTG	3 cut(s)	219, 526, 753
Cac8I	GCNNGC	2 cut(s)	274, 738
CfoI	GCGC	2 cut(s)	605, 754
Csp6I	GTAC	1 cut(s)	877
CviAII	CATG	6 cut(s)	76, 155, 199, 379, 595, 953
CviQI	GTAC	1 cut(s)	877
DdeI	CTNAG	3 cut(s)	125, 727, 960
DinI	GGCGCC	1 cut(s)	753
DpnI	GATC	2 cut(s)	249, 396
DpnII	GATC	2 cut(s)	247, 394
Eam1104I	CTCTTC	1 cut(s)	242
EarI	CTCTTC	1 cut(s)	242
Ecl136II	GAGCTC	2 cut(s)	129, 616
Eco130I	CCWWGG	1 cut(s)	75
Eco24I	GRGCYC	2 cut(s)	131, 618
Eco32I	GATATC	1 cut(s)	167
Eco53kI	GAGCTC	2 cut(s)	129, 616
Eco57I	CTGAAG	1 cut(s)	839
Eco88I	CYCGRG	1 cut(s)	717
EcoICRI	GAGCTC	2 cut(s)	129, 616
EcoRII	CCWGG	1 cut(s)	354
EcoRV	GATATC	1 cut(s)	167
EcoT14I	CCWWGG	1 cut(s)	75
EcoT38I	GRGCYC	2 cut(s)	131, 618
EgeI	GGCGCC	1 cut(s)	753
EheI	GGCGCC	1 cut(s)	753
ErhI	CCWWGG	1 cut(s)	75
FaeI	CATG	6 cut(s)	79, 158, 202, 382, 598, 956
FatI	CATG	6 cut(s)	75, 154, 198, 378, 594, 952
Fnu4HI	GCNGC	9 cut(s)	5, 122, 270, 315, 601, 772, 812, 820, 930
FokI	GGATG	6 cut(s)	92, 130, 487, 555, 623, 877
FriOI	GRGCYC	2 cut(s)	131, 618
Fsp4HI	GCNGC	9 cut(s)	5, 122, 270, 315, 601, 772, 812, 820, 930
FspBI	CTAG	3 cut(s)	47, 107, 650
GlaI	GCGC	2 cut(s)	604, 753
GluI	GCNGC	9 cut(s)	5, 122, 270, 315, 601, 772, 812, 820, 930
GsuI	CTGGAG	2 cut(s)	624, 686
HaeII	RGCGCY	1 cut(s)	755
HapII	CCGG	1 cut(s)	755
HhaI	GCGC	2 cut(s)	605, 754
Hin1I	GRCGYC	1 cut(s)	752
Hin1II	CATG	6 cut(s)	79, 158, 202, 382, 598, 956
Hin6I	GCGC	2 cut(s)	603, 752
HinP1I	GCGC	2 cut(s)	603, 752
HindIII	AAGCTT	1 cut(s)	212
HinfI	GANTC	5 cut(s)	281, 299, 388, 402, 801
HpaII	CCGG	1 cut(s)	755
HphI	GGTGA	3 cut(s)	278, 349, 791
Hpy166II	GTNNAC	2 cut(s)	160, 204
Hpy188I	TCNGA	8 cut(s)	42, 259, 439, 476, 634, 711, 858, 961
Hpy188III	TCNNGA	8 cut(s)	91, 170, 392, 422, 449, 527, 665, 719
Hpy8I	GTNNAC	2 cut(s)	160, 204
HpyAV	CCTTC	1 cut(s)	579
HpyCH4III	ACNGT	3 cut(s)	223, 521, 765
HpyF10VI	GCNNNNNNNGC	5 cut(s)	360, 650, 737, 926, 935
HpyF3I	CTNAG	3 cut(s)	125, 727, 960
Hsp92I	GRCGYC	1 cut(s)	752
Hsp92II	CATG	6 cut(s)	79, 158, 202, 382, 598, 956
HspAI	GCGC	2 cut(s)	603, 752
KasI	GGCGCC	1 cut(s)	751
Kzo9I	GATC	2 cut(s)	247, 394
LmnI	GCTCC	1 cut(s)	649
Lsp1109I	GCAGC	5 cut(s)	108, 256, 612, 831, 916
LweI	GCATC	4 cut(s)	33, 70, 108, 533
MaeI	CTAG	3 cut(s)	47, 107, 650
MaeIII	GTNAC	2 cut(s)	344, 779
MalI	GATC	2 cut(s)	249, 396
MbiI	CCGCTC	1 cut(s)	904
MboI	GATC	2 cut(s)	247, 394
MboII	GAAGA	4 cut(s)	151, 229, 770, 976
MhlI	GDGCHC	6 cut(s)	131, 162, 206, 526, 618, 952
MluCI	AATT	4 cut(s)	34, 442, 786, 914
Mly113I	GGCGCC	1 cut(s)	752
MlyI	GAGTC	1 cut(s)	275
MnlI	CCTC	6 cut(s)	335, 408, 440, 532, 556, 648
MseI	TTAA	1 cut(s)	305
MslI	CAYNNNNRTG	1 cut(s)	377
MspI	CCGG	1 cut(s)	755
MspR9I	CCNGG	1 cut(s)	356
Mva1269I	GAATGC	2 cut(s)	148, 316
MvaI	CCWGG	1 cut(s)	356
MwoI	GCNNNNNNNGC	5 cut(s)	360, 650, 737, 926, 935
NarI	GGCGCC	1 cut(s)	752
NcoI	CCATGG	1 cut(s)	75
NdeII	GATC	2 cut(s)	247, 394
NlaIII	CATG	6 cut(s)	79, 158, 202, 382, 598, 956
NlaIV	GGNNCC	1 cut(s)	753
NmuCI	GTSAC	1 cut(s)	779
NspI	RCATGY	1 cut(s)	202
NspV	TTCGAA	1 cut(s)	68
PciI	ACATGT	1 cut(s)	198
PcsI	WCGNNNNNNNCGW	1 cut(s)	580
PctI	GAATGC	2 cut(s)	148, 316
PfeI	GAWTC	4 cut(s)	299, 388, 402, 801
PkrI	GCNGC	9 cut(s)	6, 123, 271, 316, 602, 773, 813, 821, 931
PleI	GAGTC	1 cut(s)	275
PluTI	GGCGCC	1 cut(s)	755
PpsI	GAGTC	1 cut(s)	275
PscI	ACATGT	1 cut(s)	198
Psp124BI	GAGCTC	2 cut(s)	131, 618
Psp6I	CCWGG	1 cut(s)	354
PspGI	CCWGG	1 cut(s)	354
PspN4I	GGNNCC	1 cut(s)	753
RsaI	GTAC	1 cut(s)	878
RsaNI	GTAC	1 cut(s)	877
RseI	CAYNNNNRTG	1 cut(s)	377
SacI	GAGCTC	2 cut(s)	131, 618
SaqAI	TTAA	1 cut(s)	305
SatI	GCNGC	9 cut(s)	5, 122, 270, 315, 601, 772, 812, 820, 930
Sau3AI	GATC	2 cut(s)	247, 394
SchI	GAGTC	1 cut(s)	275
ScrFI	CCNGG	1 cut(s)	356
SduI	GDGCHC	6 cut(s)	131, 162, 206, 526, 618, 952
SfaNI	GCATC	4 cut(s)	33, 70, 108, 533
SfcI	CTRYAG	1 cut(s)	132
SfoI	GGCGCC	1 cut(s)	753
SfuI	TTCGAA	1 cut(s)	68
SmiMI	CAYNNNNRTG	1 cut(s)	377
SmlI	CTYRAG	1 cut(s)	525
SmoI	CTYRAG	1 cut(s)	525
Sse9I	AATT	4 cut(s)	34, 442, 786, 914
SsiI	CCGC	6 cut(s)	5, 22, 315, 771, 812, 904
SspDI	GGCGCC	1 cut(s)	751
SspMI	CTAG	3 cut(s)	47, 107, 650
SstI	GAGCTC	2 cut(s)	131, 618
StyD4I	CCNGG	1 cut(s)	354
StyI	CCWWGG	1 cut(s)	75
TaaI	ACNGT	3 cut(s)	223, 521, 765
TaqI	TCGA	4 cut(s)	68, 171, 400, 485
TasI	AATT	4 cut(s)	34, 442, 786, 914
TatI	WGTACW	1 cut(s)	876
TauI	GCSGC	4 cut(s)	7, 317, 774, 814
TfiI	GAWTC	4 cut(s)	299, 388, 402, 801
Tru1I	TTAA	1 cut(s)	305
Tru9I	TTAA	1 cut(s)	305
TscAI	CASTG	3 cut(s)	226, 526, 753
TseFI	GTSAC	1 cut(s)	779
TseI	GCWGC	5 cut(s)	121, 269, 600, 819, 929
Tsp45I	GTSAC	1 cut(s)	779
TspDTI	ATGAA	3 cut(s)	460, 881, 887
TspGWI	ACGGA	1 cut(s)	623
TspRI	CASTG	3 cut(s)	226, 526, 753
VneI	GTGCAC	2 cut(s)	158, 202
XapI	RAATTY	1 cut(s)	786
XceI	RCATGY	1 cut(s)	202
XcmI	CCANNNNNNNNNTGG	1 cut(s)	226
XspI	CTAG	3 cut(s)	47, 107, 650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.