Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0008459

Physical Location & Seq

Genomic Coordinates Forward (+)

6298295 .. 6302684

Gene Structure 4390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1090900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1611 bp

ATGGACTACGATCGAATTCTGGCGCGAGAGCAGCGGCAGATGGAGGAGATCCGGCAACTCGATCTCGAAGAACTGCAGGTCGAAGAGGTCGACGACGACTCTTCCGGCGACGACCGCGACGCTACTGGTCGCCGCACGTCCGATGATTATGCCTTCGATACCTGTTTGGCTTCGTTGCATACGTATCTTGGTGAGGTTGAAGACACTCATCACAGGGTGGCTTTTCTTGATGGGGGCGCCGTCTTGAAGCTCCCTATTTTCTATCTCGAAGGAGTTGTCCTCTTCCCAGAAGCAACCCTTCCCTTAAGAGTTATTCAACCGAATTTTGTACTATCTATTGAGAGAGCACTAACCCAAGTTGATGCTCCTTATACCATTGGCGTGATTCGGGTATTCAGAGATCCTGATAATGGAAGAATAAGGTTTGCGAATGTTGGGACAACCGCAGAGATTCGGCAATATCGGCGATTAGAAGATGGCTCACTGAATGTGGTAACTCGTGGCCAACAGAGATTTCGTCTAAGACGCCGTTGGATTGATGTGGAAGGAGCGCCATGTGGAGAAGTCCAAATCATCCAGGAAGATATACCATTGAGGGCCCCACGGGATGCATTCGGAGATTTGGCACCATTTAGTAATCCAAGAGGCCATAATTTCTCAGTTAAACTGCCTTTAAATGATTCTCGTGCAGAGTCAAATGGATCTATGGATGTGGACAATGATGCAGAGACAAATTCGGATGAAAGCTTTGAGAGTGCATTGTCATTGACTGAGAGAGAAGTTCACCAATCTGCAATTGGTTCCTATTCTGGATCTGATACAATGGAAGAATCAACAACTTCAAGCAGTGATGATGAGAAATCACATTTACAATTGCAATCAAAAGACTCTGATTCTTCAGATTCATTGCATTCATGCCCTGAGATTAGTAATGCTGATTTGGCAAGCAGTTCCATGTCAGACATGCAATCCTGCAAACAGAAAGAGCCAAATAAATGTTGGAGAAATACGGACTTAAATCAGTTTCGTAGAGTTCCAAGAGCATTCTGGCCCCATTGGGTATACCGCATGTACGACTCCTATTGTCTTGCTCAAAGAGCAGCAGATATGTGGAAAGAGATAGTTGGGGCACCAAGCATGGATCGTCTTGTGAAGAAGCCTGATCTTTTGTCATTTTATATCGCTAGTAAAATCCCCGTCTCAGAATCCACAAGGCAGGAGCTTTTGGAGATTGATGGCATTTCATATAGGTTGCGTAGAGAAATTGAGTTGCTTCAGAGTTTTGATCTTATTCGGTGTAAAACATGTCAGACTATCATTGCCAGGCGGAGTAATATGCTGGTGATGTCAAGTGAAGGTCCTCTTGGTGCTTACGTGAACCCAGGTGGCCACGTTCATGAGATAATGACTTTCTACAAAGCAAATGGCTTGGCACTTATAGGACCACCAACGAGTGAATACAGCTGGTTTCCTGGGTATGCGTGGACAATAACAAACTGTGCGGGCTGCGAAACCCATATGGGTTGGCTCTTTACAGCCACAAAAAAGAATTTGAAGCCGAAATATTTTTGGGGGATTCGAAGTTCCCAAGTTTCTGATGACCTGCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0002009 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0007423 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009790 GO:0009887 GO:0009888 GO:0009987 GO:0010498 GO:0016567 GO:0019538 GO:0019941 GO:0030163 GO:0031461 GO:0031464 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0033333 GO:0033334 GO:0033339 GO:0035107 GO:0035113 GO:0035118 GO:0035138 GO:0035239 GO:0035295 GO:0036211 GO:0042471 GO:0042472 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043583 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048513 GO:0048562 GO:0048568 GO:0048598 GO:0048729 GO:0048731 GO:0048736 GO:0048839 GO:0048856 GO:0051603 GO:0060173 GO:0060429 GO:0060562 GO:0070647 GO:0071599 GO:0071600 GO:0071704 GO:0080008 GO:0090596 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LON_substr_bdg Yippee-Mis18

Protein Analysis

537

Amino Acids

60.82

Weight (kDa)

5.07

Isoelectric Point (pI)

52.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LON_substr_bdg	PF02190	83 - 426	1.3e-27	ATP-dependent protease La (LON) substrate-binding domain
Yippee-Mis18	PF03226	431 - 530	1.6e-07	Yippee zinc-binding/DNA-binding /Mis18, centromere assembly

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008459)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25740 AT2G25740
fragaria_vesca	FvH4_2g35320 FvH4_2g35320 FvH4_2g35320 FvH4_2g35320
malus_domestica	MD08G1111400.v1.1 MD15G1090900.v1.1
prunus_persica	Prupe.1G445300_v2.0.a1 Prupe.1G445300_v2.0.a1
pyrus_communis	pycom08g09250 pycom15g08480 pycom15g08490
rosa_chinensis	RchiOBHm_Chr6g0306601
rosa_laevigata	RLG00000010781
rosa_multiflora	Rmu_sc0017624.1_g000002
rosa_roxburghii	Rroxscaffold_7G00161620
rosa_rugosa	Rorug06G0350900
rosa_samantha	Rh6AG463200 Rh6BG437700 Rh6CG477500 Rh6DG464000
rosa_wichuraiana	Rw6G040360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	67
AccB1I	GGYRCC	3 cut(s)	236, 625, 1129
AccI	GTMKAC	2 cut(s)	90, 1062
AccII	CGCG	2 cut(s)	25, 117
AciI	CCGC	7 cut(s)	34, 115, 133, 444, 1066, 1327, 1502
AclWI	GGATC	5 cut(s)	43, 395, 709, 820, 1149
AcoI	YGGCCR	2 cut(s)	502, 1387
AcsI	RAATTY	4 cut(s)	15, 322, 733, 1549
AcuI	CTGAAG	2 cut(s)	882, 1259
AcyI	GRCGYC	2 cut(s)	237, 526
AdeI	CACNNNGTG	1 cut(s)	217
AfaI	GTAC	2 cut(s)	330, 1073
AfiI	CCNNNNNNNGG	1 cut(s)	410
AflII	CTTAAG	1 cut(s)	304
AflIII	ACRYGT	1 cut(s)	1304
AgsI	TTSAA	5 cut(s)	200, 247, 317, 843, 1555
AjiI	CACGTC	1 cut(s)	138
AjnI	CCWGG	4 cut(s)	576, 1322, 1381, 1471
AjuI	GAANNNNNNNTTGG	4 cut(s)	498, 530, 1347, 1379
AloI	GAACNNNNNNTCC	2 cut(s)	1567, 1599
AluBI	AGCT	4 cut(s)	250, 747, 1222, 1464
AluI	AGCT	4 cut(s)	250, 747, 1222, 1464
Alw21I	GWGCWC	1 cut(s)	349
Alw26I	GTCTC	2 cut(s)	722, 1204
AlwI	GGATC	5 cut(s)	43, 395, 709, 820, 1149
AoxI	GGCC	5 cut(s)	502, 597, 646, 1049, 1387
ApaI	GGGCCC	1 cut(s)	601
ApeKI	GCWGC	3 cut(s)	31, 1100, 1506
ApoI	RAATTY	4 cut(s)	15, 322, 733, 1549
ArsI	GACNNNNNNTTYG	2 cut(s)	261, 293
AspLEI	GCGC	3 cut(s)	25, 239, 553
AspS9I	GGNCC	5 cut(s)	597, 598, 1050, 1358, 1442
AsuHPI	GGTGA	3 cut(s)	203, 776, 1354
AsuII	TTCGAA	1 cut(s)	1579
AvaII	GGWCC	2 cut(s)	1358, 1442
BaeGI	GKGCMC	2 cut(s)	601, 1132
BalI	TGGCCA	2 cut(s)	504, 1389
BanI	GGYRCC	3 cut(s)	236, 625, 1129
BanII	GRGCYC	1 cut(s)	601
BauI	CACGAG	2 cut(s)	498, 684
BbsI	GAAGAC	1 cut(s)	207
Bbv12I	GWGCWC	1 cut(s)	349
BbvI	GCAGC	3 cut(s)	43, 1112, 1493
BccI	CCATC	4 cut(s)	34, 224, 470, 1229
BceAI	ACGGC	2 cut(s)	224, 513
BcgI	CGANNNNNNTGC	2 cut(s)	131, 165
BciT130I	CCWGG	4 cut(s)	578, 1324, 1383, 1473
BcoDI	GTCTC	2 cut(s)	722, 1204
BfaI	CTAG	2 cut(s)	1185, 1609
BfmI	CTRYAG	1 cut(s)	74
BfoI	RGCGCY	2 cut(s)	240, 554
BfrI	CTTAAG	1 cut(s)	304
BfuAI	ACCTGC	1 cut(s)	67
BisI	GCNGC	5 cut(s)	32, 35, 133, 1101, 1507
BlsI	GCNGC	5 cut(s)	33, 36, 134, 1102, 1508
Bme1390I	CCNGG	4 cut(s)	578, 1324, 1383, 1473
Bme18I	GGWCC	2 cut(s)	1358, 1442
BmgBI	CACGTC	1 cut(s)	138
BmgT120I	GGNCC	5 cut(s)	597, 598, 1050, 1358, 1442
BmiI	GGNNCC	7 cut(s)	238, 599, 600, 627, 802, 1052, 1131
BmrFI	CCNGG	4 cut(s)	578, 1324, 1383, 1473
BmsI	GCATC	3 cut(s)	352, 598, 712
BpiI	GAAGAC	1 cut(s)	207
BplI	GAGNNNNNCTC	2 cut(s)	264, 296
Bpu14I	TTCGAA	1 cut(s)	1579
BsaAI	YACGTR	2 cut(s)	183, 1375
BsaHI	GRCGYC	2 cut(s)	237, 526
BsaJI	CCNNGG	3 cut(s)	602, 1381, 1472
Bsc4I	CCNNNNNNNGG	1 cut(s)	410
Bse1I	ACTGG	1 cut(s)	130
Bse3DI	GCAATG	2 cut(s)	905, 1317
BseBI	CCWGG	4 cut(s)	578, 1324, 1383, 1473
BseDI	CCNNGG	3 cut(s)	602, 1381, 1472
BseGI	GGATG	4 cut(s)	573, 613, 715, 745
BseLI	CCNNNNNNNGG	1 cut(s)	410
BseMI	GCAATG	2 cut(s)	905, 1317
BseMII	CTCAG	4 cut(s)	672, 762, 912, 1215
BseNI	ACTGG	1 cut(s)	130
BseRI	GAGGAG	1 cut(s)	59
BseSI	GKGCMC	2 cut(s)	601, 1132
BseXI	GCAGC	3 cut(s)	43, 1112, 1493
BsgI	GTGCAG	2 cut(s)	708, 1589
Bsh1236I	CGCG	2 cut(s)	25, 117
Bsh1285I	CGRYCG	2 cut(s)	13, 115
BshFI	GGCC	5 cut(s)	504, 599, 648, 1051, 1389
BshNI	GGYRCC	3 cut(s)	236, 625, 1129
BsiEI	CGRYCG	2 cut(s)	13, 115
BsiHKAI	GWGCWC	1 cut(s)	349
BsiSI	CCGG	2 cut(s)	52, 105
BslFI	GGGAC	1 cut(s)	451
BslI	CCNNNNNNNGG	1 cut(s)	410
BsmAI	GTCTC	2 cut(s)	722, 1204
BsmBI	CGTCTC	1 cut(s)	1204
BsmFI	GGGAC	1 cut(s)	451
BsmI	GAATGC	3 cut(s)	611, 910, 1043
BsnI	GGCC	5 cut(s)	504, 599, 648, 1051, 1389
Bsp119I	TTCGAA	1 cut(s)	1579
Bsp120I	GGGCCC	1 cut(s)	597
Bsp1286I	GDGCHC	3 cut(s)	349, 601, 1132
Bsp143I	GATC	9 cut(s)	10, 48, 61, 400, 701, 812, 1141, 1162, 1285
BspACI	CCGC	7 cut(s)	34, 115, 133, 444, 1066, 1327, 1502
BspANI	GGCC	5 cut(s)	504, 599, 648, 1051, 1389
BspCNI	CTCAG	4 cut(s)	671, 763, 913, 1214
BspFNI	CGCG	2 cut(s)	25, 117
BspHI	TCATGA	1 cut(s)	1396
BspLI	GGNNCC	7 cut(s)	238, 599, 600, 627, 802, 1052, 1131
BspMAI	CTGCAG	1 cut(s)	78
BspMI	ACCTGC	1 cut(s)	67
BspPI	GGATC	5 cut(s)	43, 395, 709, 820, 1149
BspT104I	TTCGAA	1 cut(s)	1579
BspT107I	GGYRCC	3 cut(s)	236, 625, 1129
BspTI	CTTAAG	1 cut(s)	304
BsrDI	GCAATG	2 cut(s)	905, 1317
BsrI	ACTGG	1 cut(s)	130
BssECI	CCNNGG	3 cut(s)	602, 1381, 1472
BssMI	GATC	9 cut(s)	10, 48, 61, 400, 701, 812, 1141, 1162, 1285
BssNAI	GTATAC	1 cut(s)	1063
BssNI	GRCGYC	2 cut(s)	237, 526
BssSI	CACGAG	2 cut(s)	498, 684
Bst1107I	GTATAC	1 cut(s)	1063
Bst2BI	CACGAG	2 cut(s)	498, 684
Bst2UI	CCWGG	4 cut(s)	578, 1324, 1383, 1473
Bst4CI	ACNGT	1 cut(s)	1499
Bst6I	CTCTTC	3 cut(s)	78, 106, 287
BstACI	GRCGYC	2 cut(s)	237, 526
BstAFI	CTTAAG	1 cut(s)	304
BstBAI	YACGTR	2 cut(s)	183, 1375
BstBI	TTCGAA	1 cut(s)	1579
BstC8I	GCNNGC	2 cut(s)	946, 1504
BstDEI	CTNAG	5 cut(s)	521, 658, 771, 921, 1201
BstDSI	CCRYGG	1 cut(s)	602
BstF5I	GGATG	4 cut(s)	573, 613, 715, 745
BstFNI	CGCG	2 cut(s)	25, 117
BstH2I	RGCGCY	2 cut(s)	240, 554
BstHHI	GCGC	3 cut(s)	25, 239, 553
BstKTI	GATC	9 cut(s)	13, 51, 64, 403, 704, 815, 1144, 1165, 1288
BstMAI	GTCTC	2 cut(s)	722, 1204
BstMBI	GATC	9 cut(s)	10, 48, 61, 400, 701, 812, 1141, 1162, 1285
BstMCI	CGRYCG	2 cut(s)	13, 115
BstMWI	GCNNNNNNNGC	5 cut(s)	31, 114, 463, 941, 1097
BstNI	CCWGG	4 cut(s)	578, 1324, 1383, 1473
BstNSI	RCATGY	3 cut(s)	967, 1072, 1308
BstSCI	CCNGG	4 cut(s)	576, 1322, 1381, 1471
BstSFI	CTRYAG	1 cut(s)	74
BstSLI	GKGCMC	2 cut(s)	601, 1132
BstSNI	TACGTA	1 cut(s)	183
BstUI	CGCG	2 cut(s)	25, 117
BstV1I	GCAGC	3 cut(s)	43, 1112, 1493
BstV2I	GAAGAC	1 cut(s)	207
BstX2I	RGATCY	4 cut(s)	48, 400, 701, 812
BstYI	RGATCY	4 cut(s)	48, 400, 701, 812
BstZ17I	GTATAC	1 cut(s)	1063
BsuRI	GGCC	5 cut(s)	504, 599, 648, 1051, 1389
BtgI	CCRYGG	1 cut(s)	602
BtrI	CACGTC	1 cut(s)	138
BtsCI	GGATG	4 cut(s)	573, 613, 715, 745
BtsI	GCAGTG	1 cut(s)	853
BtsIMutI	CAGTG	2 cut(s)	482, 853
BveI	ACCTGC	1 cut(s)	67
Cac8I	GCNNGC	2 cut(s)	946, 1504
CciI	TCATGA	1 cut(s)	1396
CfoI	GCGC	3 cut(s)	25, 239, 553
Cfr13I	GGNCC	5 cut(s)	597, 598, 1050, 1358, 1442
CseI	GACGC	2 cut(s)	128, 534
Csp6I	GTAC	2 cut(s)	329, 1072
CviAII	CATG	8 cut(s)	555, 915, 955, 964, 1069, 1138, 1305, 1397
CviQI	GTAC	2 cut(s)	329, 1072
DdeI	CTNAG	5 cut(s)	521, 658, 771, 921, 1201
DinI	GGCGCC	1 cut(s)	238
DpnI	GATC	9 cut(s)	12, 50, 63, 402, 703, 814, 1143, 1164, 1287
DpnII	GATC	9 cut(s)	10, 48, 61, 400, 701, 812, 1141, 1162, 1285
DraI	TTTAAA	1 cut(s)	675
DraIII	CACNNNGTG	1 cut(s)	217
EaeI	YGGCCR	2 cut(s)	502, 1387
Eam1104I	CTCTTC	3 cut(s)	78, 106, 287
EarI	CTCTTC	3 cut(s)	78, 106, 287
EciI	GGCGGA	1 cut(s)	1342
Eco105I	TACGTA	1 cut(s)	183
Eco24I	GRGCYC	1 cut(s)	601
Eco47I	GGWCC	2 cut(s)	1358, 1442
Eco57I	CTGAAG	2 cut(s)	882, 1259
EcoO109I	RGGNCCY	3 cut(s)	597, 598, 1358
EcoRI	GAATTC	1 cut(s)	15
EcoRII	CCWGG	4 cut(s)	576, 1322, 1381, 1471
EcoT22I	ATGCAT	1 cut(s)	613
EcoT38I	GRGCYC	1 cut(s)	601
EgeI	GGCGCC	1 cut(s)	238
EheI	GGCGCC	1 cut(s)	238
Esp3I	CGTCTC	1 cut(s)	1204
FaeI	CATG	8 cut(s)	558, 918, 958, 967, 1072, 1141, 1308, 1400
FalI	AAGNNNNNCTT	4 cut(s)	282, 314, 1347, 1379
FaqI	GGGAC	1 cut(s)	451
FatI	CATG	8 cut(s)	554, 914, 954, 963, 1068, 1137, 1304, 1396
FauI	CCCGC	1 cut(s)	1495
FauNDI	CATATG	1 cut(s)	1518
FblI	GTMKAC	2 cut(s)	90, 1062
Fnu4HI	GCNGC	5 cut(s)	32, 35, 133, 1101, 1507
FokI	GGATG	4 cut(s)	560, 620, 722, 752
FriOI	GRGCYC	1 cut(s)	601
Fsp4HI	GCNGC	5 cut(s)	32, 35, 133, 1101, 1507
FspBI	CTAG	2 cut(s)	1185, 1609
GlaI	GCGC	3 cut(s)	24, 238, 552
GluI	GCNGC	5 cut(s)	32, 35, 133, 1101, 1507
HaeII	RGCGCY	2 cut(s)	240, 554
HaeIII	GGCC	5 cut(s)	504, 599, 648, 1051, 1389
HapII	CCGG	2 cut(s)	52, 105
HgaI	GACGC	2 cut(s)	128, 534
HhaI	GCGC	3 cut(s)	25, 239, 553
Hin1I	GRCGYC	2 cut(s)	237, 526
Hin1II	CATG	8 cut(s)	558, 918, 958, 967, 1072, 1141, 1308, 1400
Hin6I	GCGC	3 cut(s)	23, 237, 551
HinP1I	GCGC	3 cut(s)	23, 237, 551
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HindIII	AAGCTT	1 cut(s)	745
HpaII	CCGG	2 cut(s)	52, 105
HphI	GGTGA	3 cut(s)	203, 776, 1354
Hpy166II	GTNNAC	6 cut(s)	91, 715, 784, 1063, 1378, 1485
Hpy188III	TCNNGA	7 cut(s)	65, 227, 244, 266, 404, 810, 1397
Hpy8I	GTNNAC	6 cut(s)	91, 715, 784, 1063, 1378, 1485
Hpy99I	CGWCG	4 cut(s)	95, 98, 113, 122
HpyAV	CCTTC	5 cut(s)	163, 263, 308, 539, 1349
HpyCH4III	ACNGT	1 cut(s)	1499
HpyCH4IV	ACGT	4 cut(s)	137, 182, 1374, 1392
HpyF10VI	GCNNNNNNNGC	5 cut(s)	31, 114, 463, 941, 1097
HpyF3I	CTNAG	5 cut(s)	521, 658, 771, 921, 1201
HpySE526I	ACGT	4 cut(s)	137, 182, 1374, 1392
Hsp92I	GRCGYC	2 cut(s)	237, 526
Hsp92II	CATG	8 cut(s)	558, 918, 958, 967, 1072, 1141, 1308, 1400
HspAI	GCGC	3 cut(s)	23, 237, 551
KasI	GGCGCC	1 cut(s)	236
Kzo9I	GATC	9 cut(s)	10, 48, 61, 400, 701, 812, 1141, 1162, 1285
LmnI	GCTCC	4 cut(s)	255, 370, 548, 1219
Lsp1109I	GCAGC	3 cut(s)	43, 1112, 1493
LweI	GCATC	3 cut(s)	352, 598, 712
MaeI	CTAG	2 cut(s)	1185, 1609
MaeII	ACGT	4 cut(s)	137, 182, 1374, 1392
MaeIII	GTNAC	1 cut(s)	493
MalI	GATC	9 cut(s)	12, 50, 63, 402, 703, 814, 1143, 1164, 1287
MboI	GATC	9 cut(s)	10, 48, 61, 400, 701, 812, 1141, 1162, 1285
MfeI	CAATTG	2 cut(s)	795, 872
MflI	RGATCY	4 cut(s)	48, 400, 701, 812
MhlI	GDGCHC	3 cut(s)	349, 601, 1132
MlsI	TGGCCA	2 cut(s)	504, 1389
MluCI	AATT	8 cut(s)	15, 322, 652, 733, 795, 872, 1263, 1549
MluNI	TGGCCA	2 cut(s)	504, 1389
Mly113I	GGCGCC	1 cut(s)	237
MlyI	GAGTC	4 cut(s)	92, 701, 881, 1070
MmeI	TCCRAC	2 cut(s)	512, 980
MnlI	CCTC	7 cut(s)	37, 79, 187, 290, 588, 638, 1371
Mox20I	TGGCCA	2 cut(s)	504, 1389
Mph1103I	ATGCAT	1 cut(s)	613
MscI	TGGCCA	2 cut(s)	504, 1389
MseI	TTAA	4 cut(s)	305, 663, 674, 1016
MslI	CAYNNNNRTG	2 cut(s)	380, 1395
Msp20I	TGGCCA	2 cut(s)	504, 1389
MspA1I	CMGCKG	2 cut(s)	34, 1464
MspCI	CTTAAG	1 cut(s)	304
MspI	CCGG	2 cut(s)	52, 105
MspR9I	CCNGG	4 cut(s)	578, 1324, 1383, 1473
MunI	CAATTG	2 cut(s)	795, 872
Mva1269I	GAATGC	3 cut(s)	611, 910, 1043
MvaI	CCWGG	4 cut(s)	578, 1324, 1383, 1473
MvnI	CGCG	2 cut(s)	25, 117
MwoI	GCNNNNNNNGC	5 cut(s)	31, 114, 463, 941, 1097
NarI	GGCGCC	1 cut(s)	237
NdeI	CATATG	1 cut(s)	1518
NdeII	GATC	9 cut(s)	10, 48, 61, 400, 701, 812, 1141, 1162, 1285
NlaIII	CATG	8 cut(s)	558, 918, 958, 967, 1072, 1141, 1308, 1400
NlaIV	GGNNCC	7 cut(s)	238, 599, 600, 627, 802, 1052, 1131
NsiI	ATGCAT	1 cut(s)	613
NspI	RCATGY	3 cut(s)	967, 1072, 1308
NspV	TTCGAA	1 cut(s)	1579
PagI	TCATGA	1 cut(s)	1396
PciI	ACATGT	1 cut(s)	1304
PcsI	WCGNNNNNNNCGW	2 cut(s)	87, 179
PctI	GAATGC	3 cut(s)	611, 910, 1043
PfeI	GAWTC	8 cut(s)	385, 451, 680, 830, 893, 902, 1205, 1576
PfoI	TCCNGGA	1 cut(s)	576
PkrI	GCNGC	5 cut(s)	33, 36, 134, 1102, 1508
Ple19I	CGATCG	1 cut(s)	13
PleI	GAGTC	4 cut(s)	92, 700, 881, 1070
PluTI	GGCGCC	1 cut(s)	240
PpsI	GAGTC	4 cut(s)	92, 700, 881, 1070
Ppu21I	YACGTR	2 cut(s)	183, 1375
PpuMI	RGGWCCY	1 cut(s)	1358
PscI	ACATGT	1 cut(s)	1304
Psp5II	RGGWCCY	1 cut(s)	1358
Psp6I	CCWGG	4 cut(s)	576, 1322, 1381, 1471
PspGI	CCWGG	4 cut(s)	576, 1322, 1381, 1471
PspN4I	GGNNCC	7 cut(s)	238, 599, 600, 627, 802, 1052, 1131
PspOMI	GGGCCC	1 cut(s)	597
PspPI	GGNCC	5 cut(s)	597, 598, 1050, 1358, 1442
PspPPI	RGGWCCY	1 cut(s)	1358
PstI	CTGCAG	1 cut(s)	78
PsuI	RGATCY	4 cut(s)	48, 400, 701, 812
PvuI	CGATCG	1 cut(s)	13
PvuII	CAGCTG	1 cut(s)	1464
RsaI	GTAC	2 cut(s)	330, 1073
RsaNI	GTAC	2 cut(s)	329, 1072
RseI	CAYNNNNRTG	2 cut(s)	380, 1395
SalI	GTCGAC	1 cut(s)	89
SaqAI	TTAA	4 cut(s)	305, 663, 674, 1016
SatI	GCNGC	5 cut(s)	32, 35, 133, 1101, 1507
Sau3AI	GATC	9 cut(s)	10, 48, 61, 400, 701, 812, 1141, 1162, 1285
Sau96I	GGNCC	5 cut(s)	597, 598, 1050, 1358, 1442
SchI	GAGTC	4 cut(s)	92, 701, 881, 1070
ScrFI	CCNGG	4 cut(s)	578, 1324, 1383, 1473
SduI	GDGCHC	3 cut(s)	349, 601, 1132
SfaNI	GCATC	3 cut(s)	352, 598, 712
SfcI	CTRYAG	1 cut(s)	74
SfoI	GGCGCC	1 cut(s)	238
SfuI	TTCGAA	1 cut(s)	1579
SinI	GGWCC	2 cut(s)	1358, 1442
SmiMI	CAYNNNNRTG	2 cut(s)	380, 1395
SmlI	CTYRAG	1 cut(s)	304
SmoI	CTYRAG	1 cut(s)	304
SnaBI	TACGTA	1 cut(s)	183
Sse9I	AATT	8 cut(s)	15, 322, 652, 733, 795, 872, 1263, 1549
SsiI	CCGC	7 cut(s)	34, 115, 133, 444, 1066, 1327, 1502
SspDI	GGCGCC	1 cut(s)	236
SspI	AATATT	1 cut(s)	1565
SspMI	CTAG	2 cut(s)	1185, 1609
StyD4I	CCNGG	4 cut(s)	576, 1322, 1381, 1471
TaaI	ACNGT	1 cut(s)	1499
TaiI	ACGT	4 cut(s)	140, 185, 1377, 1395
TaqI	TCGA	8 cut(s)	13, 60, 66, 81, 90, 156, 267, 1579
TasI	AATT	8 cut(s)	15, 322, 652, 733, 795, 872, 1263, 1549
TatI	WGTACW	1 cut(s)	328
TauI	GCSGC	2 cut(s)	37, 135
TfiI	GAWTC	8 cut(s)	385, 451, 680, 830, 893, 902, 1205, 1576
Tru1I	TTAA	4 cut(s)	305, 663, 674, 1016
Tru9I	TTAA	4 cut(s)	305, 663, 674, 1016
TscAI	CASTG	2 cut(s)	489, 853
TseI	GCWGC	3 cut(s)	31, 1100, 1506
TspDTI	ATGAA	5 cut(s)	756, 894, 903, 1233, 1385
TspGWI	ACGGA	1 cut(s)	1025
TspRI	CASTG	2 cut(s)	489, 853
Vha464I	CTTAAG	1 cut(s)	304
VpaK11BI	GGWCC	2 cut(s)	1358, 1442
XapI	RAATTY	4 cut(s)	15, 322, 733, 1549
XceI	RCATGY	3 cut(s)	967, 1072, 1308
XcmI	CCANNNNNNNNNTGG	3 cut(s)	794, 996, 1044
XmiI	GTMKAC	2 cut(s)	90, 1062
XspI	CTAG	2 cut(s)	1185, 1609
Zsp2I	ATGCAT	1 cut(s)	613

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.