Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0008459

Physical Location & Seq

Genomic Coordinates Reverse (-)

64183077 .. 64187006

Gene Structure 3930 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G040360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1614 bp

ATGGCCGACCACGAACGCCTTCTGGCGAGAGAGCGGCTACAGATCGAGCAGATTCGAGCACTCGATCTCGAGGAGCTGGAGGTCGAGGAGGTCGATGACGACTACAACGACGACTCTTCCGCCGACGACGCCGCCGCCACTGGTCGCGGCATGGCTGATGAATACACCTTCAATACTTGCTTGGCTTCATTGCATACATATCTTGGCGAGGTTGAAGACACTCATCATAGGATGGCGTTTTTGGATGGCGGTGCGGTATTGAATCTCCCAATCTTCTATCTCGAAGGAGTTGTCCTGTTCCCAGACGCTACCCTTCCACTAAGAGTTATTCAACCCAATTTTGTAGTCGCTATTGAGAGAGCACTATCCCAAGTTGACGCTCCTTATACCATTGGTGTGATTCGTGTTTACAGAGATCCCAACAATAGAAGCATAAAGTTTGCAAATATTGGGACAACTGCGGAGATTCGCCAATATAGGAGATTAGAGGATGGCTCACTGAACGTGGTAACCCGTGGTCAACAGCGATTTCGTCTTAGACGTCGTTGGATTGATGTGGAAGGAGCGCCATACGGGGAAATCCAAATTATAGAAGAAGATGTACCATTGAGGGCTCCACGGGCTGCATTTGGAGATCTGGCACCATTTAGTAATCGAAAAGGCCATAGTTTCCCGCGTGCAATGCCTTCGCACGCTTCTCGTGGAAATTCAAATGGTTCTATGGATGTGGACAATGACTCAGAGGCAAATTCAGATGAAAGCTTTGAGAGTGCACTTTCTTTGACAGAAAAGGGAATTCACCGATCTGCAATTGAATCCTATTATGGATCTGATGTTGCAACAAGCAGTGATGGTGAGAAGTCAGAATTCTTATCTCAAGGATCACAATCGAAAGACTCTGATTCCACAGATTCATTGCATTCGTGCCCTGAGAGTTTGGTTGATTTGGGGAGCAGTTCCATATCGGAGATGCAATCATCCAAACAGAAAGATCCAAGTAGTTGGAGAAATACAGACTCTAAACAGATACGTAGAGTTCCAAGAGCATTCTGGCCCTATTGGGTATATCGCATGTATGACTCCTATTGTCTTGCTCAAGGAGTGGCAGATATGTGGAAACAGATAGTTGGGGCACCATTAATGGATGGTCTGGTGAAGAAGCCTGATCTTTTGTCATTTTACATCGCTAGTAAACTTCCTGTTTCTGAATCTACAAGGCAGGAGCTTTTGGAGATTGATGGTATTTCATATAGGTTACGTCGGGAAATTGAGTTGCTTCAGACTGTTAATCTTCTCCGGTGTAAAACTTGTCAGACTGTTTTTGCAAGGCGGAGTGATATGCTAGTGATGTCAAGTGATGGTCCTCTTGGTGCTTATGTAAACCCCGATGGTTGTGTACACGAGATAATGACTCTCTACAAAGCAACTGGCTTGGCACTCATAGGTTCAGCAGTGAAAGAATACAGCTGGTTTCCTGGGTATGCATGGACAGTAACAACCTGTGCCATCTGTGAAACTCAAATGGGTTGGCTCTTCACAGCCACAAAAAAGAATTTGAAGCCTAAATTGTTTTGGGGGATTCGGAGTTCCCAAGTTTCTGATGACTTACACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0002009 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0007423 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009790 GO:0009887 GO:0009888 GO:0009987 GO:0010498 GO:0016567 GO:0019538 GO:0019941 GO:0030163 GO:0031461 GO:0031464 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0033333 GO:0033334 GO:0033339 GO:0035107 GO:0035113 GO:0035118 GO:0035138 GO:0035239 GO:0035295 GO:0036211 GO:0042471 GO:0042472 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043583 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048513 GO:0048562 GO:0048568 GO:0048598 GO:0048729 GO:0048731 GO:0048736 GO:0048839 GO:0048856 GO:0051603 GO:0060173 GO:0060429 GO:0060562 GO:0070647 GO:0071599 GO:0071600 GO:0071704 GO:0080008 GO:0090596 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LON_substr_bdg Yippee-Mis18

Protein Analysis

537

Amino Acids

60.25

Weight (kDa)

5.09

Isoelectric Point (pI)

51.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LON_substr_bdg	PF02190	88 - 209	2.1e-22	ATP-dependent protease La (LON) substrate-binding domain
Yippee-Mis18	PF03226	432 - 531	2.7e-07	Yippee zinc-binding/DNA-binding /Mis18, centromere assembly

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008459)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25740 AT2G25740
fragaria_vesca	FvH4_2g35320 FvH4_2g35320 FvH4_2g35320 FvH4_2g35320
malus_domestica	MD08G1111400.v1.1 MD15G1090900.v1.1
prunus_persica	Prupe.1G445300_v2.0.a1 Prupe.1G445300_v2.0.a1
pyrus_communis	pycom08g09250 pycom15g08480 pycom15g08490
rosa_chinensis	RchiOBHm_Chr6g0306601
rosa_laevigata	RLG00000010781
rosa_multiflora	Rmu_sc0017624.1_g000002
rosa_roxburghii	Rroxscaffold_7G00161620
rosa_rugosa	Rorug06G0350900
rosa_samantha	Rh6AG463200 Rh6BG437700 Rh6CG477500 Rh6DG464000
rosa_wichuraiana	Rw6G040360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	544
AccB1I	GGYRCC	2 cut(s)	640, 1132
AccBSI	CCGCTC	1 cut(s)	34
AccII	CGCG	2 cut(s)	147, 676
AclWI	GGATC	4 cut(s)	410, 835, 889, 986
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	5 cut(s)	706, 748, 795, 866, 1552
AcuI	CTGAAG	1 cut(s)	1262
AcyI	GRCGYC	2 cut(s)	129, 541
AfaI	GTAC	2 cut(s)	603, 1398
AgsI	TTSAA	7 cut(s)	172, 215, 262, 332, 711, 815, 1558
AjnI	CCWGG	1 cut(s)	1474
AloI	GAACNNNNNNTCC	2 cut(s)	1570, 1602
AluBI	AGCT	4 cut(s)	76, 762, 1225, 1467
AluI	AGCT	4 cut(s)	76, 762, 1225, 1467
Alw21I	GWGCWC	3 cut(s)	61, 364, 775
Alw44I	GTGCAC	1 cut(s)	771
AlwI	GGATC	4 cut(s)	410, 835, 889, 986
Ama87I	CYCGRG	1 cut(s)	68
AoxI	GGCC	3 cut(s)	3, 661, 1052
ApaLI	GTGCAC	1 cut(s)	771
ApeKI	GCWGC	1 cut(s)	623
ApoI	RAATTY	5 cut(s)	706, 748, 795, 866, 1552
ArsI	GACNNNNNNTTYG	2 cut(s)	276, 308
AseI	ATTAAT	1 cut(s)	1139
Asp700I	GAANNNNTTC	1 cut(s)	18
AspLEI	GCGC	1 cut(s)	568
AspS9I	GGNCC	2 cut(s)	1053, 1361
AsuHPI	GGTGA	3 cut(s)	791, 866, 1165
AvaI	CYCGRG	1 cut(s)	68
AvaII	GGWCC	1 cut(s)	1361
BaeGI	GKGCMC	3 cut(s)	775, 929, 1135
BanI	GGYRCC	2 cut(s)	640, 1132
BanII	GRGCYC	1 cut(s)	616
BarI	GAAGNNNNNNTAC	2 cut(s)	585, 617
BauI	CACGAG	2 cut(s)	699, 1400
BbsI	GAAGAC	1 cut(s)	222
Bbv12I	GWGCWC	3 cut(s)	61, 364, 775
BbvI	GCAGC	1 cut(s)	610
BccI	CCATC	9 cut(s)	226, 239, 485, 845, 1139, 1232, 1352, 1382, 1514
BcgI	CGANNNNNNTGC	4 cut(s)	669, 680, 703, 714
BciT130I	CCWGG	1 cut(s)	1476
BfaI	CTAG	2 cut(s)	1188, 1343
BfmI	CTRYAG	1 cut(s)	38
BfoI	RGCGCY	1 cut(s)	569
BglII	AGATCT	1 cut(s)	634
BisI	GCNGC	5 cut(s)	35, 132, 135, 148, 624
BlsI	GCNGC	5 cut(s)	36, 133, 136, 149, 625
Bme1390I	CCNGG	1 cut(s)	1476
Bme18I	GGWCC	1 cut(s)	1361
BmeT110I	CYCGRG	1 cut(s)	68
BmgT120I	GGNCC	2 cut(s)	1053, 1361
BmiI	GGNNCC	3 cut(s)	615, 642, 1134
BmrFI	CCNGG	1 cut(s)	1476
BmsI	GCATC	1 cut(s)	960
BpiI	GAAGAC	1 cut(s)	222
BplI	GAGNNNNNCTC	2 cut(s)	479, 511
BpmI	CTGGAG	1 cut(s)	98
BpuEI	CTTGAG	2 cut(s)	861, 1080
BsaAI	YACGTR	1 cut(s)	1031
BsaBI	GATNNNNATC	1 cut(s)	886
BsaHI	GRCGYC	2 cut(s)	129, 541
BsaJI	CCNNGG	3 cut(s)	514, 617, 1475
BsaWI	WCCGGW	1 cut(s)	1296
Bse1I	ACTGG	2 cut(s)	145, 1432
Bse3DI	GCAATG	3 cut(s)	188, 687, 914
Bse8I	GATNNNNATC	1 cut(s)	886
BseBI	CCWGG	1 cut(s)	1476
BseDI	CCNNGG	3 cut(s)	514, 617, 1475
BseGI	GGATG	6 cut(s)	237, 250, 496, 730, 977, 1150
BseJI	GATNNNNATC	1 cut(s)	886
BseMI	GCAATG	3 cut(s)	188, 687, 914
BseMII	CTCAG	2 cut(s)	753, 921
BseNI	ACTGG	2 cut(s)	145, 1432
BseRI	GAGGAG	2 cut(s)	86, 101
BseSI	GKGCMC	3 cut(s)	775, 929, 1135
BseXI	GCAGC	1 cut(s)	610
Bsh1236I	CGCG	2 cut(s)	147, 676
BshFI	GGCC	3 cut(s)	5, 663, 1054
BshNI	GGYRCC	2 cut(s)	640, 1132
BsiHKAI	GWGCWC	3 cut(s)	61, 364, 775
BsiHKCI	CYCGRG	1 cut(s)	68
BsiSI	CCGG	1 cut(s)	1297
BslFI	GGGAC	1 cut(s)	466
BsmFI	GGGAC	1 cut(s)	466
BsmI	GAATGC	2 cut(s)	919, 1046
BsnI	GGCC	3 cut(s)	5, 663, 1054
BsoBI	CYCGRG	1 cut(s)	68
Bsp1286I	GDGCHC	6 cut(s)	61, 364, 616, 775, 929, 1135
Bsp1407I	TGTACA	1 cut(s)	1396
Bsp143I	GATC	9 cut(s)	42, 64, 415, 634, 803, 827, 881, 991, 1165
BspANI	GGCC	3 cut(s)	5, 663, 1054
BspCNI	CTCAG	2 cut(s)	752, 922
BspFNI	CGCG	2 cut(s)	147, 676
BspLI	GGNNCC	3 cut(s)	615, 642, 1134
BspPI	GGATC	4 cut(s)	410, 835, 889, 986
BspQI	GCTCTTC	1 cut(s)	1538
BspT107I	GGYRCC	2 cut(s)	640, 1132
BsrBI	CCGCTC	1 cut(s)	34
BsrDI	GCAATG	3 cut(s)	188, 687, 914
BsrGI	TGTACA	1 cut(s)	1396
BsrI	ACTGG	2 cut(s)	145, 1432
BssECI	CCNNGG	3 cut(s)	514, 617, 1475
BssMI	GATC	9 cut(s)	42, 64, 415, 634, 803, 827, 881, 991, 1165
BssNI	GRCGYC	2 cut(s)	129, 541
BssSI	CACGAG	2 cut(s)	699, 1400
Bst2BI	CACGAG	2 cut(s)	699, 1400
Bst2UI	CCWGG	1 cut(s)	1476
Bst4CI	ACNGT	3 cut(s)	1285, 1318, 1492
Bst6I	CTCTTC	2 cut(s)	121, 1538
BstACI	GRCGYC	2 cut(s)	129, 541
BstAUI	TGTACA	1 cut(s)	1396
BstBAI	YACGTR	1 cut(s)	1031
BstC8I	GCNNGC	2 cut(s)	678, 693
BstDEI	CTNAG	4 cut(s)	320, 536, 739, 930
BstDSI	CCRYGG	2 cut(s)	514, 617
BstEII	GGTNACC	1 cut(s)	508
BstF5I	GGATG	6 cut(s)	237, 250, 496, 730, 977, 1150
BstFNI	CGCG	2 cut(s)	147, 676
BstH2I	RGCGCY	1 cut(s)	569
BstHHI	GCGC	1 cut(s)	568
BstKTI	GATC	9 cut(s)	45, 67, 418, 637, 806, 830, 884, 994, 1168
BstMBI	GATC	9 cut(s)	42, 64, 415, 634, 803, 827, 881, 991, 1165
BstMWI	GCNNNNNNNGC	3 cut(s)	128, 620, 682
BstNI	CCWGG	1 cut(s)	1476
BstNSI	RCATGY	1 cut(s)	1075
BstPI	GGTNACC	1 cut(s)	508
BstSCI	CCNGG	1 cut(s)	1474
BstSFI	CTRYAG	1 cut(s)	38
BstSLI	GKGCMC	3 cut(s)	775, 929, 1135
BstSNI	TACGTA	1 cut(s)	1031
BstUI	CGCG	2 cut(s)	147, 676
BstV1I	GCAGC	1 cut(s)	610
BstV2I	GAAGAC	1 cut(s)	222
BstX2I	RGATCY	4 cut(s)	415, 634, 827, 991
BstXI	CCANNNNNNTGG	1 cut(s)	1002
BstYI	RGATCY	4 cut(s)	415, 634, 827, 991
BsuRI	GGCC	3 cut(s)	5, 663, 1054
BtgI	CCRYGG	2 cut(s)	514, 617
BtgZI	GCGATG	1 cut(s)	1168
BtsCI	GGATG	6 cut(s)	237, 250, 496, 730, 977, 1150
BtsI	GCAGTG	2 cut(s)	853, 1458
BtsIMutI	CAGTG	4 cut(s)	138, 497, 853, 1458
Cac8I	GCNNGC	2 cut(s)	678, 693
CfoI	GCGC	1 cut(s)	568
Cfr13I	GGNCC	2 cut(s)	1053, 1361
CseI	GACGC	3 cut(s)	137, 314, 386
Csp6I	GTAC	2 cut(s)	602, 1397
CviAII	CATG	3 cut(s)	151, 1072, 1485
CviQI	GTAC	2 cut(s)	602, 1397
DdeI	CTNAG	4 cut(s)	320, 536, 739, 930
DpnI	GATC	9 cut(s)	44, 66, 417, 636, 805, 829, 883, 993, 1167
DpnII	GATC	9 cut(s)	42, 64, 415, 634, 803, 827, 881, 991, 1165
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	121, 1538
EarI	CTCTTC	2 cut(s)	121, 1538
EciI	GGCGGA	2 cut(s)	109, 1345
Eco105I	TACGTA	1 cut(s)	1031
Eco24I	GRGCYC	1 cut(s)	616
Eco47I	GGWCC	1 cut(s)	1361
Eco57I	CTGAAG	1 cut(s)	1262
Eco88I	CYCGRG	1 cut(s)	68
Eco91I	GGTNACC	1 cut(s)	508
EcoO65I	GGTNACC	1 cut(s)	508
EcoRI	GAATTC	2 cut(s)	795, 866
EcoRII	CCWGG	1 cut(s)	1474
EcoT22I	ATGCAT	1 cut(s)	1486
EcoT38I	GRGCYC	1 cut(s)	616
FaeI	CATG	3 cut(s)	154, 1075, 1488
FaqI	GGGAC	1 cut(s)	466
FatI	CATG	3 cut(s)	150, 1071, 1484
FauI	CCCGC	1 cut(s)	681
Fnu4HI	GCNGC	5 cut(s)	35, 132, 135, 148, 624
FokI	GGATG	6 cut(s)	244, 257, 503, 737, 964, 1157
FriOI	GRGCYC	1 cut(s)	616
Fsp4HI	GCNGC	5 cut(s)	35, 132, 135, 148, 624
FspBI	CTAG	2 cut(s)	1188, 1343
GlaI	GCGC	1 cut(s)	567
GluI	GCNGC	5 cut(s)	35, 132, 135, 148, 624
GsuI	CTGGAG	1 cut(s)	98
HaeII	RGCGCY	1 cut(s)	569
HaeIII	GGCC	3 cut(s)	5, 663, 1054
HapII	CCGG	1 cut(s)	1297
HgaI	GACGC	3 cut(s)	137, 314, 386
HhaI	GCGC	1 cut(s)	568
Hin1I	GRCGYC	2 cut(s)	129, 541
Hin1II	CATG	3 cut(s)	154, 1075, 1488
Hin6I	GCGC	1 cut(s)	566
HinP1I	GCGC	1 cut(s)	566
HincII	GTYRAC	2 cut(s)	376, 521
HindII	GTYRAC	2 cut(s)	376, 521
HindIII	AAGCTT	1 cut(s)	760
HpaII	CCGG	1 cut(s)	1297
HphI	GGTGA	3 cut(s)	791, 866, 1165
Hpy166II	GTNNAC	9 cut(s)	376, 409, 521, 730, 773, 1193, 1381, 1397, 1399
Hpy188III	TCNNGA	3 cut(s)	68, 281, 1262
Hpy8I	GTNNAC	9 cut(s)	376, 409, 521, 730, 773, 1193, 1381, 1397, 1399
Hpy99I	CGWCG	5 cut(s)	113, 128, 131, 546, 1263
HpyAV	CCTTC	6 cut(s)	29, 178, 278, 323, 554, 696
HpyCH4III	ACNGT	3 cut(s)	1285, 1318, 1492
HpyCH4IV	ACGT	4 cut(s)	504, 541, 1030, 1258
HpyF10VI	GCNNNNNNNGC	3 cut(s)	128, 620, 682
HpyF3I	CTNAG	4 cut(s)	320, 536, 739, 930
HpySE526I	ACGT	4 cut(s)	504, 541, 1030, 1258
Hsp92I	GRCGYC	2 cut(s)	129, 541
Hsp92II	CATG	3 cut(s)	154, 1075, 1488
HspAI	GCGC	1 cut(s)	566
Kzo9I	GATC	9 cut(s)	42, 64, 415, 634, 803, 827, 881, 991, 1165
LguI	GCTCTTC	1 cut(s)	1538
LmnI	GCTCC	6 cut(s)	73, 385, 563, 619, 951, 1222
Lsp1109I	GCAGC	1 cut(s)	610
LweI	GCATC	1 cut(s)	960
MaeI	CTAG	2 cut(s)	1188, 1343
MaeII	ACGT	4 cut(s)	504, 541, 1030, 1258
MaeIII	GTNAC	3 cut(s)	508, 1254, 1492
MalI	GATC	9 cut(s)	44, 66, 417, 636, 805, 829, 883, 993, 1167
MbiI	CCGCTC	1 cut(s)	34
MboI	GATC	9 cut(s)	42, 64, 415, 634, 803, 827, 881, 991, 1165
MboII	GAAGA	8 cut(s)	108, 227, 265, 605, 608, 1168, 1283, 1525
MfeI	CAATTG	1 cut(s)	810
MflI	RGATCY	4 cut(s)	415, 634, 827, 991
MhlI	GDGCHC	6 cut(s)	61, 364, 616, 775, 929, 1135
MlyI	GAGTC	6 cut(s)	107, 731, 890, 1010, 1073, 1405
MmeI	TCCRAC	2 cut(s)	527, 983
MnlI	CCTC	9 cut(s)	64, 73, 79, 82, 202, 481, 603, 736, 1374
Mph1103I	ATGCAT	1 cut(s)	1486
MroXI	GAANNNNTTC	1 cut(s)	18
MseI	TTAA	2 cut(s)	1139, 1287
MslI	CAYNNNNRTG	1 cut(s)	395
MspA1I	CMGCKG	1 cut(s)	1467
MspI	CCGG	1 cut(s)	1297
MspR9I	CCNGG	1 cut(s)	1476
MunI	CAATTG	1 cut(s)	810
Mva1269I	GAATGC	2 cut(s)	919, 1046
MvaI	CCWGG	1 cut(s)	1476
MvnI	CGCG	2 cut(s)	147, 676
MwoI	GCNNNNNNNGC	3 cut(s)	128, 620, 682
NdeII	GATC	9 cut(s)	42, 64, 415, 634, 803, 827, 881, 991, 1165
NlaIII	CATG	3 cut(s)	154, 1075, 1488
NlaIV	GGNNCC	3 cut(s)	615, 642, 1134
NsiI	ATGCAT	1 cut(s)	1486
NspI	RCATGY	1 cut(s)	1075
PaeR7I	CTCGAG	1 cut(s)	68
PciSI	GCTCTTC	1 cut(s)	1538
PcsI	WCGNNNNNNNCGW	3 cut(s)	90, 105, 538
PctI	GAATGC	2 cut(s)	919, 1046
PdmI	GAANNNNTTC	1 cut(s)	18
PfeI	GAWTC	9 cut(s)	52, 262, 400, 466, 815, 902, 911, 1208, 1579
PkrI	GCNGC	5 cut(s)	36, 133, 136, 149, 625
PleI	GAGTC	6 cut(s)	107, 731, 890, 1010, 1073, 1405
PpsI	GAGTC	6 cut(s)	107, 731, 890, 1010, 1073, 1405
Ppu21I	YACGTR	1 cut(s)	1031
PshBI	ATTAAT	1 cut(s)	1139
Psp6I	CCWGG	1 cut(s)	1474
PspEI	GGTNACC	1 cut(s)	508
PspGI	CCWGG	1 cut(s)	1474
PspN4I	GGNNCC	3 cut(s)	615, 642, 1134
PspPI	GGNCC	2 cut(s)	1053, 1361
PsuI	RGATCY	4 cut(s)	415, 634, 827, 991
PvuII	CAGCTG	1 cut(s)	1467
RsaI	GTAC	2 cut(s)	603, 1398
RsaNI	GTAC	2 cut(s)	602, 1397
RseI	CAYNNNNRTG	1 cut(s)	395
SapI	GCTCTTC	1 cut(s)	1538
SaqAI	TTAA	2 cut(s)	1139, 1287
SatI	GCNGC	5 cut(s)	35, 132, 135, 148, 624
Sau3AI	GATC	9 cut(s)	42, 64, 415, 634, 803, 827, 881, 991, 1165
Sau96I	GGNCC	2 cut(s)	1053, 1361
SchI	GAGTC	6 cut(s)	107, 731, 890, 1010, 1073, 1405
ScrFI	CCNGG	1 cut(s)	1476
SduI	GDGCHC	6 cut(s)	61, 364, 616, 775, 929, 1135
SfaNI	GCATC	1 cut(s)	960
SfcI	CTRYAG	1 cut(s)	38
Sfr274I	CTCGAG	1 cut(s)	68
SinI	GGWCC	1 cut(s)	1361
SlaI	CTCGAG	1 cut(s)	68
SmiMI	CAYNNNNRTG	1 cut(s)	395
SmlI	CTYRAG	3 cut(s)	68, 876, 1095
SmoI	CTYRAG	3 cut(s)	68, 876, 1095
SnaBI	TACGTA	1 cut(s)	1031
SspI	AATATT	1 cut(s)	448
SspMI	CTAG	2 cut(s)	1188, 1343
StyD4I	CCNGG	1 cut(s)	1474
TaaI	ACNGT	3 cut(s)	1285, 1318, 1492
TaiI	ACGT	4 cut(s)	507, 544, 1033, 1261
TaqI	TCGA	9 cut(s)	45, 55, 63, 69, 84, 93, 282, 655, 890
TatI	WGTACW	1 cut(s)	1396
TauI	GCSGC	4 cut(s)	37, 134, 137, 150
TfiI	GAWTC	9 cut(s)	52, 262, 400, 466, 815, 902, 911, 1208, 1579
Tru1I	TTAA	2 cut(s)	1139, 1287
Tru9I	TTAA	2 cut(s)	1139, 1287
TscAI	CASTG	4 cut(s)	145, 504, 853, 1458
TseI	GCWGC	1 cut(s)	623
TspDTI	ATGAA	5 cut(s)	174, 177, 771, 903, 1236
TspRI	CASTG	4 cut(s)	145, 504, 853, 1458
VneI	GTGCAC	1 cut(s)	771
VpaK11BI	GGWCC	1 cut(s)	1361
VspI	ATTAAT	1 cut(s)	1139
XapI	RAATTY	5 cut(s)	706, 748, 795, 866, 1552
XceI	RCATGY	1 cut(s)	1075
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1047
XhoI	CTCGAG	1 cut(s)	68
XmnI	GAANNNNTTC	1 cut(s)	18
XspI	CTAG	2 cut(s)	1188, 1343
ZraI	GACGTC	1 cut(s)	542
Zsp2I	ATGCAT	1 cut(s)	1486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.