Rh6CG477500

ATP-dependent protease La (LON) substrate-binding domain

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Reverse (-)
64571185 .. 64575075
3891 bp
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UTR
Exon/CDS
Intron
Rh6CG477500.1

Sequence Viewer

Length: 1464 bp
ATGGCTGATGAATATACCTTCAATACTTGTTTGGCTTCATTGCATACGTATCTTGGCGAGGTTGAAGACACTCATCATAGGATGGCGTTTTTGGATGGCGGTGCGGTATTGAACCTCCCAATCTTCTATCTCGAAGGAATTGTCCTGTTCCCAGACGCTACCCTTCCACTAAGAGTTATTCAACCCAATTTTGTAGTCGCTATTGAGAGAGCACTATCCCAAGTTGACGCTCCTTATACCATTGGTGTGATTCGTGTTTACAGAGATCCCAACAATAGAAGCATAAAGTTTGCAAATATTGGGACAACTGCGGAGATTCGCCAATATAGGAGATTAGAGGATGGCTCACTGAACGTGGTAACCCGTGGTCAACAGCGATTTCGTCTTAGACGCCGTTGGATTGATGTGGAAGGAGCGCCATACGGGGAAATCCAAATTATAGAAGAAGATGTACCATTGAGGGCTCCACGGGCTGCATTTGGAGATCTGGCACCATTTAGTAATCGAAAAGGCCATAGTTTCCCGCGTGCAATGCCTTCGCACGCTTCTCGTGGAAATTCAAATGGATCTATGGATGTGGACAATGACTCAGAGGCAAATTCAGATGAAAGCTTTGAGAGTGCACTTTCTTTGACAGAAAAGGGAATTCACCAATCTGCAATTGAATCCTATTATGGATCTGATGTGTCAACAAGCAGTGATGGTGAGAAGTCAGAATTCTTATCTCAAGGATCACAATCAAAAGACTCTGATTCCACAGATTCATTGCATTCGTGCCCTGAGAGTTTGGTTGATTTGGGGAGCAGTTCCATATCGGAGATGCAATCATCCAAACAGAAAGATCCAAGTAGTTGGAGAAATACAGACTCTAAACCGATACGTAGAGTTCCAAGAGCATTCTGGCCCTATTGGGTATATCGCATGTATGACTCCTATTGTCTTGCTCAAGGAGTGGCAGATATGTGGAAACAGATAGTTGGGGCACCATTAATGGATGGTCTGGTGAAGAAGCCTGATCTTTTGTCATTTTACATCGCTAGTAAACTTCCTGTTTTTGAATCTACAAGACAGGAGCTTTTGGAGATTGATGGTATTTCATATAGGTTACGTCGGGAAATTGAGTTGCTTCAGACTGTTAATCTTCTCCGGTGTAAAACTTGTCAGACTGTTTTTGCAAGGCGGAGTGATATGCTAGTGATGTCAAGTGATGGTCCTCTTGGTGCTTATGTAAACCCCTATGGTTGTGTACACGAGATAATGACTCTCTACAAAGCAACTGGCTTGGCACTCGTAGGTTCAGCAGTGAAAGAATACAGCTGGTTTCCTGGGTATGCATGGACAGTAACAAACTGTGCCACCTGTGAAACTCAAATGGGTTGGCTCTTCACAGCCACAAAAAAGAATTTGAAGCCTAAATTGTTTTGGGGGATTCGGAGTTCCCAAGTTTCTGATGACTTGCACTAA

Protein Analysis

487

Amino Acids

54.67

Weight (kDa)

5.81

Isoelectric Point (pI)

49.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LON_substr_bdg PF02190 38 - 162 2.5e-22 ATP-dependent protease La (LON) substrate-binding domain
Yippee-Mis18 PF03226 382 - 481 1.2e-07 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 490, 982
AccII CGCG 1 cut(s) 526
AciI CCGC 5 cut(s) 99, 104, 311, 524, 1180
AclWI GGATC 5 cut(s) 260, 574, 685, 739, 836
AcsI RAATTY 5 cut(s) 556, 598, 645, 716, 1402
AcuI CTGAAG 1 cut(s) 1112
AcyI GRCGYC 1 cut(s) 391
AfaI GTAC 2 cut(s) 453, 1248
AgsI TTSAA 8 cut(s) 22, 65, 112, 182, 561, 665, 1058, 1408
AjnI CCWGG 1 cut(s) 1324
AloI GAACNNNNNNTCC 2 cut(s) 1420, 1452
AluBI AGCT 3 cut(s) 612, 1075, 1317
AluI AGCT 3 cut(s) 612, 1075, 1317
Alw21I GWGCWC 2 cut(s) 214, 625
Alw44I GTGCAC 1 cut(s) 621
AlwI GGATC 5 cut(s) 260, 574, 685, 739, 836
AoxI GGCC 2 cut(s) 511, 902
ApaLI GTGCAC 1 cut(s) 621
ApeKI GCWGC 1 cut(s) 473
ApoI RAATTY 5 cut(s) 556, 598, 645, 716, 1402
ArsI GACNNNNNNTTYG 2 cut(s) 126, 158
AseI ATTAAT 1 cut(s) 989
AspLEI GCGC 1 cut(s) 418
AspS9I GGNCC 2 cut(s) 903, 1211
AsuHPI GGTGA 3 cut(s) 641, 716, 1015
AvaII GGWCC 1 cut(s) 1211
BaeGI GKGCMC 3 cut(s) 625, 779, 985
BanI GGYRCC 2 cut(s) 490, 982
BanII GRGCYC 1 cut(s) 466
BarI GAAGNNNNNNTAC 2 cut(s) 435, 467
BauI CACGAG 2 cut(s) 549, 1250
BbsI GAAGAC 1 cut(s) 72
Bbv12I GWGCWC 2 cut(s) 214, 625
BbvI GCAGC 1 cut(s) 460
BccI CCATC 7 cut(s) 76, 89, 335, 695, 989, 1082, 1202
BceAI ACGGC 1 cut(s) 378
BcgI CGANNNNNNTGC 4 cut(s) 519, 530, 553, 564
BciT130I CCWGG 1 cut(s) 1326
BfaI CTAG 2 cut(s) 1038, 1193
BfoI RGCGCY 1 cut(s) 419
BglII AGATCT 1 cut(s) 484
BisI GCNGC 1 cut(s) 474
BlsI GCNGC 1 cut(s) 475
Bme1390I CCNGG 1 cut(s) 1326
Bme18I GGWCC 1 cut(s) 1211
BmgT120I GGNCC 2 cut(s) 903, 1211
BmiI GGNNCC 3 cut(s) 465, 492, 984
BmrFI CCNGG 1 cut(s) 1326
BmsI GCATC 1 cut(s) 810
BpiI GAAGAC 1 cut(s) 72
BplI GAGNNNNNCTC 2 cut(s) 329, 361
BpuEI CTTGAG 2 cut(s) 711, 930
BsaAI YACGTR 2 cut(s) 48, 881
BsaBI GATNNNNATC 1 cut(s) 736
BsaHI GRCGYC 1 cut(s) 391
BsaJI CCNNGG 3 cut(s) 364, 467, 1325
BsaWI WCCGGW 1 cut(s) 1146
Bse1I ACTGG 1 cut(s) 1282
Bse3DI GCAATG 3 cut(s) 38, 537, 764
Bse8I GATNNNNATC 1 cut(s) 736
BseBI CCWGG 1 cut(s) 1326
BseDI CCNNGG 3 cut(s) 364, 467, 1325
BseGI GGATG 6 cut(s) 87, 100, 346, 580, 827, 1000
BseJI GATNNNNATC 1 cut(s) 736
BseMI GCAATG 3 cut(s) 38, 537, 764
BseMII CTCAG 2 cut(s) 603, 771
BseNI ACTGG 1 cut(s) 1282
BseSI GKGCMC 3 cut(s) 625, 779, 985
BseXI GCAGC 1 cut(s) 460
Bsh1236I CGCG 1 cut(s) 526
BshFI GGCC 2 cut(s) 513, 904
BshNI GGYRCC 2 cut(s) 490, 982
BsiHKAI GWGCWC 2 cut(s) 214, 625
BsiSI CCGG 1 cut(s) 1147
BslFI GGGAC 1 cut(s) 316
BsmFI GGGAC 1 cut(s) 316
BsmI GAATGC 2 cut(s) 769, 896
BsnI GGCC 2 cut(s) 513, 904
Bsp1286I GDGCHC 5 cut(s) 214, 466, 625, 779, 985
Bsp1407I TGTACA 1 cut(s) 1246
Bsp143I GATC 7 cut(s) 265, 484, 566, 677, 731, 841, 1015
BspACI CCGC 5 cut(s) 99, 104, 311, 524, 1180
BspANI GGCC 2 cut(s) 513, 904
BspCNI CTCAG 2 cut(s) 602, 772
BspFNI CGCG 1 cut(s) 526
BspLI GGNNCC 3 cut(s) 465, 492, 984
BspPI GGATC 5 cut(s) 260, 574, 685, 739, 836
BspQI GCTCTTC 1 cut(s) 1388
BspT107I GGYRCC 2 cut(s) 490, 982
BsrDI GCAATG 3 cut(s) 38, 537, 764
BsrGI TGTACA 1 cut(s) 1246
BsrI ACTGG 1 cut(s) 1282
BssECI CCNNGG 3 cut(s) 364, 467, 1325
BssMI GATC 7 cut(s) 265, 484, 566, 677, 731, 841, 1015
BssNI GRCGYC 1 cut(s) 391
BssSI CACGAG 2 cut(s) 549, 1250
Bst2BI CACGAG 2 cut(s) 549, 1250
Bst2UI CCWGG 1 cut(s) 1326
Bst4CI ACNGT 4 cut(s) 1135, 1168, 1342, 1352
Bst6I CTCTTC 1 cut(s) 1388
BstACI GRCGYC 1 cut(s) 391
BstAUI TGTACA 1 cut(s) 1246
BstBAI YACGTR 2 cut(s) 48, 881
BstC8I GCNNGC 2 cut(s) 528, 543
BstDEI CTNAG 4 cut(s) 170, 386, 589, 780
BstDSI CCRYGG 2 cut(s) 364, 467
BstEII GGTNACC 1 cut(s) 358
BstF5I GGATG 6 cut(s) 87, 100, 346, 580, 827, 1000
BstFNI CGCG 1 cut(s) 526
BstH2I RGCGCY 1 cut(s) 419
BstHHI GCGC 1 cut(s) 418
BstKTI GATC 7 cut(s) 268, 487, 569, 680, 734, 844, 1018
BstMBI GATC 7 cut(s) 265, 484, 566, 677, 731, 841, 1015
BstMWI GCNNNNNNNGC 2 cut(s) 470, 532
BstNI CCWGG 1 cut(s) 1326
BstNSI RCATGY 1 cut(s) 925
BstPI GGTNACC 1 cut(s) 358
BstSCI CCNGG 1 cut(s) 1324
BstSLI GKGCMC 3 cut(s) 625, 779, 985
BstSNI TACGTA 2 cut(s) 48, 881
BstUI CGCG 1 cut(s) 526
BstV1I GCAGC 1 cut(s) 460
BstV2I GAAGAC 1 cut(s) 72
BstX2I RGATCY 5 cut(s) 265, 484, 566, 677, 841
BstXI CCANNNNNNTGG 1 cut(s) 852
BstYI RGATCY 5 cut(s) 265, 484, 566, 677, 841
BsuRI GGCC 2 cut(s) 513, 904
BtgI CCRYGG 2 cut(s) 364, 467
BtgZI GCGATG 1 cut(s) 1018
BtsCI GGATG 6 cut(s) 87, 100, 346, 580, 827, 1000
BtsI GCAGTG 2 cut(s) 703, 1308
BtsIMutI CAGTG 3 cut(s) 347, 703, 1308
Cac8I GCNNGC 2 cut(s) 528, 543
CfoI GCGC 1 cut(s) 418
Cfr13I GGNCC 2 cut(s) 903, 1211
CseI GACGC 3 cut(s) 164, 236, 399
Csp6I GTAC 2 cut(s) 452, 1247
CviAII CATG 2 cut(s) 922, 1335
CviQI GTAC 2 cut(s) 452, 1247
DdeI CTNAG 4 cut(s) 170, 386, 589, 780
DpnI GATC 7 cut(s) 267, 486, 568, 679, 733, 843, 1017
DpnII GATC 7 cut(s) 265, 484, 566, 677, 731, 841, 1015
Eam1104I CTCTTC 1 cut(s) 1388
EarI CTCTTC 1 cut(s) 1388
EciI GGCGGA 1 cut(s) 1195
Eco105I TACGTA 2 cut(s) 48, 881
Eco24I GRGCYC 1 cut(s) 466
Eco47I GGWCC 1 cut(s) 1211
Eco57I CTGAAG 1 cut(s) 1112
Eco91I GGTNACC 1 cut(s) 358
EcoO65I GGTNACC 1 cut(s) 358
EcoRI GAATTC 2 cut(s) 645, 716
EcoRII CCWGG 1 cut(s) 1324
EcoT22I ATGCAT 1 cut(s) 1336
EcoT38I GRGCYC 1 cut(s) 466
FaeI CATG 2 cut(s) 925, 1338
FaqI GGGAC 1 cut(s) 316
FatI CATG 2 cut(s) 921, 1334
FauI CCCGC 1 cut(s) 531
Fnu4HI GCNGC 1 cut(s) 474
FokI GGATG 6 cut(s) 94, 107, 353, 587, 814, 1007
FriOI GRGCYC 1 cut(s) 466
Fsp4HI GCNGC 1 cut(s) 474
FspBI CTAG 2 cut(s) 1038, 1193
GlaI GCGC 1 cut(s) 417
GluI GCNGC 1 cut(s) 474
HaeII RGCGCY 1 cut(s) 419
HaeIII GGCC 2 cut(s) 513, 904
HapII CCGG 1 cut(s) 1147
HgaI GACGC 3 cut(s) 164, 236, 399
HhaI GCGC 1 cut(s) 418
Hin1I GRCGYC 1 cut(s) 391
Hin1II CATG 2 cut(s) 925, 1338
Hin6I GCGC 1 cut(s) 416
HinP1I GCGC 1 cut(s) 416
HincII GTYRAC 3 cut(s) 226, 371, 690
HindII GTYRAC 3 cut(s) 226, 371, 690
HindIII AAGCTT 1 cut(s) 610
HpaII CCGG 1 cut(s) 1147
HphI GGTGA 3 cut(s) 641, 716, 1015
Hpy188III TCNNGA 2 cut(s) 131, 1112
Hpy99I CGWCG 1 cut(s) 1113
HpyAV CCTTC 5 cut(s) 28, 128, 173, 404, 546
HpyCH4III ACNGT 4 cut(s) 1135, 1168, 1342, 1352
HpyCH4IV ACGT 4 cut(s) 47, 354, 880, 1108
HpyF10VI GCNNNNNNNGC 2 cut(s) 470, 532
HpyF3I CTNAG 4 cut(s) 170, 386, 589, 780
HpySE526I ACGT 4 cut(s) 47, 354, 880, 1108
Hsp92I GRCGYC 1 cut(s) 391
Hsp92II CATG 2 cut(s) 925, 1338
HspAI GCGC 1 cut(s) 416
Kzo9I GATC 7 cut(s) 265, 484, 566, 677, 731, 841, 1015
LguI GCTCTTC 1 cut(s) 1388
LmnI GCTCC 5 cut(s) 235, 413, 469, 801, 1072
Lsp1109I GCAGC 1 cut(s) 460
LweI GCATC 1 cut(s) 810
MaeI CTAG 2 cut(s) 1038, 1193
MaeII ACGT 4 cut(s) 47, 354, 880, 1108
MaeIII GTNAC 3 cut(s) 358, 1104, 1342
MalI GATC 7 cut(s) 267, 486, 568, 679, 733, 843, 1017
MboI GATC 7 cut(s) 265, 484, 566, 677, 731, 841, 1015
MboII GAAGA 7 cut(s) 77, 115, 455, 458, 1018, 1133, 1375
MfeI CAATTG 1 cut(s) 660
MflI RGATCY 5 cut(s) 265, 484, 566, 677, 841
MhlI GDGCHC 5 cut(s) 214, 466, 625, 779, 985
MlyI GAGTC 5 cut(s) 581, 740, 860, 923, 1255
MmeI TCCRAC 2 cut(s) 377, 833
MnlI CCTC 6 cut(s) 52, 125, 331, 453, 586, 1224
Mph1103I ATGCAT 1 cut(s) 1336
MseI TTAA 2 cut(s) 989, 1137
MslI CAYNNNNRTG 1 cut(s) 245
MspA1I CMGCKG 1 cut(s) 1317
MspI CCGG 1 cut(s) 1147
MspR9I CCNGG 1 cut(s) 1326
MunI CAATTG 1 cut(s) 660
Mva1269I GAATGC 2 cut(s) 769, 896
MvaI CCWGG 1 cut(s) 1326
MvnI CGCG 1 cut(s) 526
MwoI GCNNNNNNNGC 2 cut(s) 470, 532
NdeII GATC 7 cut(s) 265, 484, 566, 677, 731, 841, 1015
NlaIII CATG 2 cut(s) 925, 1338
NlaIV GGNNCC 3 cut(s) 465, 492, 984
NsiI ATGCAT 1 cut(s) 1336
NspI RCATGY 1 cut(s) 925
PciSI GCTCTTC 1 cut(s) 1388
PctI GAATGC 2 cut(s) 769, 896
PfeI GAWTC 7 cut(s) 250, 316, 665, 752, 761, 1058, 1429
PkrI GCNGC 1 cut(s) 475
PleI GAGTC 5 cut(s) 581, 740, 860, 923, 1255
PpsI GAGTC 5 cut(s) 581, 740, 860, 923, 1255
Ppu21I YACGTR 2 cut(s) 48, 881
PshBI ATTAAT 1 cut(s) 989
Psp6I CCWGG 1 cut(s) 1324
PspEI GGTNACC 1 cut(s) 358
PspGI CCWGG 1 cut(s) 1324
PspN4I GGNNCC 3 cut(s) 465, 492, 984
PspPI GGNCC 2 cut(s) 903, 1211
PsuI RGATCY 5 cut(s) 265, 484, 566, 677, 841
PvuII CAGCTG 1 cut(s) 1317
RsaI GTAC 2 cut(s) 453, 1248
RsaNI GTAC 2 cut(s) 452, 1247
RseI CAYNNNNRTG 1 cut(s) 245
SapI GCTCTTC 1 cut(s) 1388
SaqAI TTAA 2 cut(s) 989, 1137
SatI GCNGC 1 cut(s) 474
Sau3AI GATC 7 cut(s) 265, 484, 566, 677, 731, 841, 1015
Sau96I GGNCC 2 cut(s) 903, 1211
SchI GAGTC 5 cut(s) 581, 740, 860, 923, 1255
ScrFI CCNGG 1 cut(s) 1326
SduI GDGCHC 5 cut(s) 214, 466, 625, 779, 985
SfaNI GCATC 1 cut(s) 810
SinI GGWCC 1 cut(s) 1211
SmiMI CAYNNNNRTG 1 cut(s) 245
SmlI CTYRAG 2 cut(s) 726, 945
SmoI CTYRAG 2 cut(s) 726, 945
SnaBI TACGTA 2 cut(s) 48, 881
SsiI CCGC 5 cut(s) 99, 104, 311, 524, 1180
SspI AATATT 1 cut(s) 298
SspMI CTAG 2 cut(s) 1038, 1193
StyD4I CCNGG 1 cut(s) 1324
TaaI ACNGT 4 cut(s) 1135, 1168, 1342, 1352
TaiI ACGT 4 cut(s) 50, 357, 883, 1111
TaqI TCGA 2 cut(s) 132, 505
TatI WGTACW 1 cut(s) 1246
TfiI GAWTC 7 cut(s) 250, 316, 665, 752, 761, 1058, 1429
Tru1I TTAA 2 cut(s) 989, 1137
Tru9I TTAA 2 cut(s) 989, 1137
TscAI CASTG 3 cut(s) 354, 703, 1308
TseI GCWGC 1 cut(s) 473
TspDTI ATGAA 5 cut(s) 24, 27, 621, 753, 1086
TspRI CASTG 3 cut(s) 354, 703, 1308
VneI GTGCAC 1 cut(s) 621
VpaK11BI GGWCC 1 cut(s) 1211
VspI ATTAAT 1 cut(s) 989
XapI RAATTY 5 cut(s) 556, 598, 645, 716, 1402
XceI RCATGY 1 cut(s) 925
XcmI CCANNNNNNNNNTGG 1 cut(s) 897
XspI CTAG 2 cut(s) 1038, 1193
Zsp2I ATGCAT 1 cut(s) 1336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.