Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0008459

Physical Location & Seq

Genomic Coordinates Forward (+)

50010070 .. 50011992

Gene Structure 1923 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0350900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGGAGGGTCAAGAAGAAAGTACAAGCGGTCTCGTACCAAGGTCCGGGTGGCGCTGCCGAAGCGGAAGCCCAACGTGTTCAAGCCGGCCTTCTGTCTCCCTCCCAAGCTCCGCGCCTTGATCGACCAAGCAGAACCCGCTTCTCGCCCTAAGTGGGACCCCGAGGGCAGCGTCATCCAAAACTACAAGTCGTTCGGCGTCCTCTCCAACCCTAACTTGCTCAACGTCCGCTCTCGCACCTCTCACATCGTCGAAAGCGACTCTCTCCAGGCTCCTCCCGATGGGGAGGCTGAGGCCGCCGAGCTCGACCCCAACGACGACGGTAGCGATCTCGAAGAAGACGATTTGAAAACTACTCTAGGAAAGAAACGGAGAGATGGGAGACCTGCTTCGTTACTACCGTTAACCACCATCCAACGTGTTCATGTCAGTCGGCTTATTGAGAAATATGGAGATGACTATCAGAGGATGTTCATGGATACAAAACTAAATGCAATGCAGCATTCTGTTGCGACTTTGGAGAAGTTATGCAGAAGGTATCACATGTATAAAGATAAAAATCCCTTGATATTGACCCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0002009 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0007423 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009790 GO:0009887 GO:0009888 GO:0009987 GO:0010498 GO:0016567 GO:0019538 GO:0019941 GO:0030163 GO:0031461 GO:0031464 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0033333 GO:0033334 GO:0033339 GO:0035107 GO:0035113 GO:0035118 GO:0035138 GO:0035239 GO:0035295 GO:0036211 GO:0042471 GO:0042472 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043583 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048513 GO:0048562 GO:0048568 GO:0048598 GO:0048729 GO:0048731 GO:0048736 GO:0048839 GO:0048856 GO:0051603 GO:0060173 GO:0060429 GO:0060562 GO:0070647 GO:0071599 GO:0071600 GO:0071704 GO:0080008 GO:0090596 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LON_substr_bdg Yippee-Mis18

Protein Analysis

193

Amino Acids

22.03

Weight (kDa)

9.74

Isoelectric Point (pI)

54.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nop16	PF09420	111 - 181	2.3e-15	Ribosome biogenesis protein Nop16

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008459)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25740 AT2G25740
fragaria_vesca	FvH4_2g35320 FvH4_2g35320 FvH4_2g35320 FvH4_2g35320
malus_domestica	MD08G1111400.v1.1 MD15G1090900.v1.1
prunus_persica	Prupe.1G445300_v2.0.a1 Prupe.1G445300_v2.0.a1
pyrus_communis	pycom08g09250 pycom15g08480 pycom15g08490
rosa_chinensis	RchiOBHm_Chr6g0306601
rosa_laevigata	RLG00000010781
rosa_multiflora	Rmu_sc0017624.1_g000002
rosa_roxburghii	Rroxscaffold_7G00161620
rosa_rugosa	Rorug06G0350900
rosa_samantha	Rh6AG463200 Rh6BG437700 Rh6CG477500 Rh6DG464000
rosa_wichuraiana	Rw6G040360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	394
AccBSI	CCGCTC	1 cut(s)	231
AccII	CGCG	1 cut(s)	114
AciI	CCGC	6 cut(s)	28, 64, 112, 138, 229, 297
AcyI	GRCGYC	1 cut(s)	198
AfaI	GTAC	2 cut(s)	23, 37
AfiI	CCNNNNNNNGG	3 cut(s)	45, 154, 281
AflIII	ACRYGT	3 cut(s)	75, 418, 543
AgsI	TTSAA	2 cut(s)	82, 349
AjnI	CCWGG	1 cut(s)	267
AluBI	AGCT	2 cut(s)	109, 304
AluI	AGCT	2 cut(s)	109, 304
Alw21I	GWGCWC	1 cut(s)	306
Alw26I	GTCTC	3 cut(s)	36, 101, 376
Ama87I	CYCGRG	1 cut(s)	161
AoxI	GGCC	2 cut(s)	87, 294
ApeKI	GCWGC	3 cut(s)	55, 168, 499
AspLEI	GCGC	2 cut(s)	55, 116
AspS9I	GGNCC	2 cut(s)	43, 157
AsuC2I	CCSGG	1 cut(s)	47
AvaI	CYCGRG	1 cut(s)	161
AvaII	GGWCC	2 cut(s)	43, 157
BanII	GRGCYC	1 cut(s)	306
BbsI	GAAGAC	1 cut(s)	345
Bbv12I	GWGCWC	1 cut(s)	306
BbvCI	CCTCAGC	1 cut(s)	291
BbvI	GCAGC	3 cut(s)	42, 180, 511
BccI	CCATC	3 cut(s)	275, 371, 419
BciT130I	CCWGG	1 cut(s)	269
BciVI	GTATCC	1 cut(s)	472
BcnI	CCSGG	1 cut(s)	47
BcoDI	GTCTC	3 cut(s)	36, 101, 376
BfaI	CTAG	1 cut(s)	359
BfoI	RGCGCY	1 cut(s)	56
BfuAI	ACCTGC	1 cut(s)	394
BfuI	GTATCC	1 cut(s)	472
BisI	GCNGC	4 cut(s)	56, 169, 297, 500
BlsI	GCNGC	4 cut(s)	57, 170, 298, 501
Bme1390I	CCNGG	2 cut(s)	47, 269
Bme18I	GGWCC	2 cut(s)	43, 157
BmeT110I	CYCGRG	1 cut(s)	161
BmgT120I	GGNCC	2 cut(s)	43, 157
BmiI	GGNNCC	3 cut(s)	158, 159, 273
BmrFI	CCNGG	2 cut(s)	47, 269
BpiI	GAAGAC	1 cut(s)	345
BpmI	CTGGAG	1 cut(s)	251
Bpu10I	CCTNAGC	1 cut(s)	291
BpuMI	CCSGG	1 cut(s)	47
BsaBI	GATNNNNATC	2 cut(s)	459, 558
BsaHI	GRCGYC	1 cut(s)	198
BsaI	GGTCTC	2 cut(s)	36, 376
BsaJI	CCNNGG	2 cut(s)	39, 162
Bsc4I	CCNNNNNNNGG	3 cut(s)	45, 154, 281
Bse118I	RCCGGY	1 cut(s)	85
Bse3DI	GCAATG	1 cut(s)	501
Bse8I	GATNNNNATC	2 cut(s)	459, 558
BseBI	CCWGG	1 cut(s)	269
BseDI	CCNNGG	2 cut(s)	39, 162
BseGI	GGATG	3 cut(s)	174, 411, 474
BseJI	GATNNNNATC	2 cut(s)	459, 558
BseLI	CCNNNNNNNGG	3 cut(s)	45, 154, 281
BseMI	GCAATG	1 cut(s)	501
BseMII	CTCAG	1 cut(s)	282
BseRI	GAGGAG	1 cut(s)	264
BseXI	GCAGC	3 cut(s)	42, 180, 511
Bsh1236I	CGCG	1 cut(s)	114
BshFI	GGCC	2 cut(s)	89, 296
BsiHKAI	GWGCWC	1 cut(s)	306
BsiHKCI	CYCGRG	1 cut(s)	161
BsiSI	CCGG	2 cut(s)	46, 86
BslFI	GGGAC	1 cut(s)	170
BslI	CCNNNNNNNGG	3 cut(s)	45, 154, 281
BsmAI	GTCTC	3 cut(s)	36, 101, 376
BsmFI	GGGAC	1 cut(s)	170
BsmI	GAATGC	1 cut(s)	502
BsnI	GGCC	2 cut(s)	89, 296
Bso31I	GGTCTC	2 cut(s)	36, 376
BsoBI	CYCGRG	1 cut(s)	161
Bsp1286I	GDGCHC	1 cut(s)	306
Bsp143I	GATC	2 cut(s)	120, 328
BspACI	CCGC	6 cut(s)	28, 64, 112, 138, 229, 297
BspANI	GGCC	2 cut(s)	89, 296
BspCNI	CTCAG	1 cut(s)	283
BspFNI	CGCG	1 cut(s)	114
BspLI	GGNNCC	3 cut(s)	158, 159, 273
BspMI	ACCTGC	1 cut(s)	394
BspTNI	GGTCTC	2 cut(s)	36, 376
BsrBI	CCGCTC	1 cut(s)	231
BsrDI	GCAATG	1 cut(s)	501
BsrFI	RCCGGY	1 cut(s)	85
BssAI	RCCGGY	1 cut(s)	85
BssECI	CCNNGG	2 cut(s)	39, 162
BssMI	GATC	2 cut(s)	120, 328
BssNI	GRCGYC	1 cut(s)	198
BssT1I	CCWWGG	1 cut(s)	39
Bst2UI	CCWGG	1 cut(s)	269
Bst4CI	ACNGT	2 cut(s)	323, 402
BstACI	GRCGYC	1 cut(s)	198
BstC8I	GCNNGC	1 cut(s)	87
BstDEI	CTNAG	2 cut(s)	150, 291
BstF5I	GGATG	3 cut(s)	174, 411, 474
BstFNI	CGCG	1 cut(s)	114
BstH2I	RGCGCY	1 cut(s)	56
BstHHI	GCGC	2 cut(s)	55, 116
BstKTI	GATC	2 cut(s)	123, 331
BstMAI	GTCTC	3 cut(s)	36, 101, 376
BstMBI	GATC	2 cut(s)	120, 328
BstMWI	GCNNNNNNNGC	3 cut(s)	61, 137, 296
BstNI	CCWGG	1 cut(s)	269
BstNSI	RCATGY	1 cut(s)	547
BstSCI	CCNGG	2 cut(s)	45, 267
BstUI	CGCG	1 cut(s)	114
BstV1I	GCAGC	3 cut(s)	42, 180, 511
BstV2I	GAAGAC	1 cut(s)	345
BsuI	GTATCC	1 cut(s)	472
BsuRI	GGCC	2 cut(s)	89, 296
BtsCI	GGATG	3 cut(s)	174, 411, 474
BveI	ACCTGC	1 cut(s)	394
Cac8I	GCNNGC	1 cut(s)	87
CfoI	GCGC	2 cut(s)	55, 116
Cfr10I	RCCGGY	1 cut(s)	85
Cfr13I	GGNCC	2 cut(s)	43, 157
CseI	GACGC	2 cut(s)	160, 187
Csp6I	GTAC	2 cut(s)	22, 36
CviAII	CATG	3 cut(s)	425, 475, 544
CviJI	RGCY	9 cut(s)	70, 85, 89, 109, 272, 290, 296, 304, 436
CviKI_1	RGCY	9 cut(s)	70, 85, 89, 109, 272, 290, 296, 304, 436
CviQI	GTAC	2 cut(s)	22, 36
DdeI	CTNAG	2 cut(s)	150, 291
DpnI	GATC	2 cut(s)	122, 330
DpnII	GATC	2 cut(s)	120, 328
Ecl136II	GAGCTC	1 cut(s)	304
Eco130I	CCWWGG	1 cut(s)	39
Eco24I	GRGCYC	1 cut(s)	306
Eco31I	GGTCTC	2 cut(s)	36, 376
Eco47I	GGWCC	2 cut(s)	43, 157
Eco53kI	GAGCTC	1 cut(s)	304
Eco88I	CYCGRG	1 cut(s)	161
EcoICRI	GAGCTC	1 cut(s)	304
EcoO109I	RGGNCCY	1 cut(s)	157
EcoRII	CCWGG	1 cut(s)	267
EcoT14I	CCWWGG	1 cut(s)	39
EcoT38I	GRGCYC	1 cut(s)	306
ErhI	CCWWGG	1 cut(s)	39
FaeI	CATG	3 cut(s)	428, 478, 547
FaiI	YATR	6 cut(s)	426, 450, 476, 529, 545, 549
FalI	AAGNNNNNCTT	2 cut(s)	74, 106
FaqI	GGGAC	1 cut(s)	170
FatI	CATG	3 cut(s)	424, 474, 543
FauI	CCCGC	1 cut(s)	145
Fnu4HI	GCNGC	4 cut(s)	56, 169, 297, 500
FokI	GGATG	3 cut(s)	161, 398, 481
FriOI	GRGCYC	1 cut(s)	306
Fsp4HI	GCNGC	4 cut(s)	56, 169, 297, 500
FspBI	CTAG	1 cut(s)	359
GlaI	GCGC	2 cut(s)	54, 115
GluI	GCNGC	4 cut(s)	56, 169, 297, 500
GsuI	CTGGAG	1 cut(s)	251
HaeII	RGCGCY	1 cut(s)	56
HaeIII	GGCC	2 cut(s)	89, 296
HapII	CCGG	2 cut(s)	46, 86
HgaI	GACGC	2 cut(s)	160, 187
HhaI	GCGC	2 cut(s)	55, 116
Hin1I	GRCGYC	1 cut(s)	198
Hin1II	CATG	3 cut(s)	428, 478, 547
Hin6I	GCGC	2 cut(s)	53, 114
HinP1I	GCGC	2 cut(s)	53, 114
HincII	GTYRAC	1 cut(s)	405
HindII	GTYRAC	1 cut(s)	405
HinfI	GANTC	1 cut(s)	260
HpaI	GTTAAC	1 cut(s)	405
HpaII	CCGG	2 cut(s)	46, 86
Hpy166II	GTNNAC	1 cut(s)	405
Hpy188I	TCNGA	1 cut(s)	465
Hpy188III	TCNNGA	3 cut(s)	12, 278, 332
Hpy8I	GTNNAC	1 cut(s)	405
Hpy99I	CGWCG	3 cut(s)	254, 320, 323
HpyAV	CCTTC	2 cut(s)	100, 528
HpyCH4III	ACNGT	2 cut(s)	323, 402
HpyCH4IV	ACGT	3 cut(s)	75, 225, 418
HpyCH4V	TGCA	3 cut(s)	494, 499, 531
HpyF10VI	GCNNNNNNNGC	3 cut(s)	61, 137, 296
HpyF3I	CTNAG	2 cut(s)	150, 291
HpySE526I	ACGT	3 cut(s)	75, 225, 418
Hsp92I	GRCGYC	1 cut(s)	198
Hsp92II	CATG	3 cut(s)	428, 478, 547
HspAI	GCGC	2 cut(s)	53, 114
KflI	GGGWCCC	1 cut(s)	157
KroI	GCCGGC	1 cut(s)	85
KroNI	GCCGGC	1 cut(s)	87
KspAI	GTTAAC	1 cut(s)	405
Kzo9I	GATC	2 cut(s)	120, 328
LmnI	GCTCC	2 cut(s)	114, 277
LpnPI	CCDG	5 cut(s)	59, 99, 254, 281, 399
Lsp1109I	GCAGC	3 cut(s)	42, 180, 511
MaeI	CTAG	1 cut(s)	359
MaeII	ACGT	3 cut(s)	75, 225, 418
MaeIII	GTNAC	1 cut(s)	393
MalI	GATC	2 cut(s)	122, 330
MbiI	CCGCTC	1 cut(s)	231
MboI	GATC	2 cut(s)	120, 328
MboII	GAAGA	3 cut(s)	27, 347, 350
MhlI	GDGCHC	1 cut(s)	306
MlyI	GAGTC	1 cut(s)	254
MmeI	TCCRAC	2 cut(s)	231, 439
MnlI	CCTC	8 cut(s)	111, 157, 212, 250, 280, 285, 286, 459
MroNI	GCCGGC	1 cut(s)	85
MseI	TTAA	1 cut(s)	404
MspI	CCGG	2 cut(s)	46, 86
MspR9I	CCNGG	2 cut(s)	47, 269
Mva1269I	GAATGC	1 cut(s)	502
MvaI	CCWGG	1 cut(s)	269
MvnI	CGCG	1 cut(s)	114
MwoI	GCNNNNNNNGC	3 cut(s)	61, 137, 296
NaeI	GCCGGC	1 cut(s)	87
NciI	CCSGG	1 cut(s)	47
NdeII	GATC	2 cut(s)	120, 328
NgoMIV	GCCGGC	1 cut(s)	85
NlaIII	CATG	3 cut(s)	428, 478, 547
NlaIV	GGNNCC	3 cut(s)	158, 159, 273
NmeAIII	GCCGAG	1 cut(s)	325
NspI	RCATGY	1 cut(s)	547
PciI	ACATGT	1 cut(s)	543
PcsI	WCGNNNNNNNCGW	5 cut(s)	255, 312, 324, 339, 398
PctI	GAATGC	1 cut(s)	502
PdiI	GCCGGC	1 cut(s)	87
PkrI	GCNGC	4 cut(s)	57, 170, 298, 501
PleI	GAGTC	1 cut(s)	254
PpsI	GAGTC	1 cut(s)	254
PpuMI	RGGWCCY	1 cut(s)	157
PscI	ACATGT	1 cut(s)	543
Psp124BI	GAGCTC	1 cut(s)	306
Psp5II	RGGWCCY	1 cut(s)	157
Psp6I	CCWGG	1 cut(s)	267
PspGI	CCWGG	1 cut(s)	267
PspN4I	GGNNCC	3 cut(s)	158, 159, 273
PspPI	GGNCC	2 cut(s)	43, 157
PspPPI	RGGWCCY	1 cut(s)	157
RsaI	GTAC	2 cut(s)	23, 37
RsaNI	GTAC	2 cut(s)	22, 36
SacI	GAGCTC	1 cut(s)	306
SaqAI	TTAA	1 cut(s)	404
SatI	GCNGC	4 cut(s)	56, 169, 297, 500
Sau3AI	GATC	2 cut(s)	120, 328
Sau96I	GGNCC	2 cut(s)	43, 157
SchI	GAGTC	1 cut(s)	254
ScrFI	CCNGG	2 cut(s)	47, 269
SduI	GDGCHC	1 cut(s)	306
SetI	ASST	9 cut(s)	45, 78, 111, 228, 242, 306, 388, 421, 539
SinI	GGWCC	2 cut(s)	43, 157
SsiI	CCGC	6 cut(s)	28, 64, 112, 138, 229, 297
SspMI	CTAG	1 cut(s)	359
SstI	GAGCTC	1 cut(s)	306
StyD4I	CCNGG	2 cut(s)	45, 267
StyI	CCWWGG	1 cut(s)	39
TaaI	ACNGT	2 cut(s)	323, 402
TaiI	ACGT	3 cut(s)	78, 228, 421
TaqI	TCGA	4 cut(s)	123, 252, 306, 333
TatI	WGTACW	1 cut(s)	21
TauI	GCSGC	1 cut(s)	299
Tru1I	TTAA	1 cut(s)	404
Tru9I	TTAA	1 cut(s)	404
TseI	GCWGC	3 cut(s)	55, 168, 499
TspDTI	ATGAA	2 cut(s)	413, 463
TspGWI	ACGGA	1 cut(s)	385
VpaK11BI	GGWCC	2 cut(s)	43, 157
XceI	RCATGY	1 cut(s)	547
XcmI	CCANNNNNNNNNTGG	1 cut(s)	46
XspI	CTAG	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.