Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0008459

Physical Location & Seq

Genomic Coordinates Reverse (-)

63239137 .. 63242566

Gene Structure 3430 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG464000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1383 bp

ATGGCGTTTTTGGATGGCGGTGCGGTATTGAACCTCCCAATCTTCTATCTCGAAGGAGTTGTCCTGTTCCCAGACGCTACCCTTCCACTAAGAGTTATTCAACCCAATTTTGTAGTCGCTATTGAGAGAGCACTATCCCAAGTTGACGCTCCTTATACCATTGGTGTGATTCGTGTTTACAGAGATCCCAACAATAGAAGCATAAAGTTTGCAAATATTGGGACAACTGCGGAGATTCGCCAATATAGGAGATTAGAGGATGGCTCACTGAACGTGGTAACCCGTGGTCAACAGCGATTTCGTCTTAGACGCCGTTGGATTGATGTGGAAGGAGCGCCATACGGGGAAATCCAAATTATAGAAGAAGATGTACCATTGAGGGCTCCACGGGCTGCATTTGGAGATCTGGCACCATTTAGTAATCGAAAAGGCCATAGTTTCCCCCGTGCAATGCCTTCGCACGCTTCTCGTGGAAATTCAAATGGATCTATGGATGTGGACAATGACTCAGAGGCAAATTCAGATGAAAGCTTTGAGAGTGCACTTTCTTTGACAGAAAAGGGAATTCACCAATCTGCAATTGAATCCTATTATGGATCTGATGTGTCAACAAGCAGTGATGGTGAGAAGTCAGAATTCTTATCTCAAGGATCACAATCAAAAGACTCTGATTCCACAGATTCATTGCATTCGTGCCCTGAGAGTTTGGTTGATTTGGGGAGCAGTTCCATATCGGAGATGCAATCATCCAAACAGAAAGATCCAAGTAGTTGGAGAAATACAGACTCTAAACAGATACGTAGAGTTCCAAGAGCATTCTGGCCCTATTGGGTATATCGCATGTATGACTCCTATTGTCTTGCTCAAGGAGTGGCAGATATGTGGAAACAGATAGTTGGGGCACCATTAATGGATGGTCTGGTGAAGAAGCCTGATCTTTTGTCATTTTACATCGCTAGTAAACTTCCTGTTTCTGAATCTACAAGGCAGGAGCTTTTGGAGATTGATGGTATTTCATATAGGTTACGTCGGGAAATTGAGTTGCTTCAGACTGTTAATCTTCTCCGGTGTAAAACTTGTCAGACTGTTTTTGCAAGGCGGAGTGATATGCTAGTGATGTCAAGTGATGGTCCTCTTGGTGCTTATGTAAACCCCTATGGTTGTGTACACGAGATAATGACTCTCTACAAAGCAACTGGCTTGGCACTCGTAGGTTCAGCAGTGAAAGAATACAGCTGGTTTCCTGGGTATGCATGGACAGTAACAAACTGTGCCACCTGTGAAACTCAAATGGGTTGGCTCTTCACAGCCACAAAAAAGAATTTGAAGCCTAAATTGTTTTGGGGGATTCGGAGTTCCCAAGTTTCTGATGACTTGCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0002009 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0007423 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009790 GO:0009887 GO:0009888 GO:0009987 GO:0010498 GO:0016567 GO:0019538 GO:0019941 GO:0030163 GO:0031461 GO:0031464 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0033333 GO:0033334 GO:0033339 GO:0035107 GO:0035113 GO:0035118 GO:0035138 GO:0035239 GO:0035295 GO:0036211 GO:0042471 GO:0042472 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043583 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048513 GO:0048562 GO:0048568 GO:0048598 GO:0048729 GO:0048731 GO:0048736 GO:0048839 GO:0048856 GO:0051603 GO:0060173 GO:0060429 GO:0060562 GO:0070647 GO:0071599 GO:0071600 GO:0071704 GO:0080008 GO:0090596 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LON_substr_bdg Yippee-Mis18

Protein Analysis

460

Amino Acids

51.49

Weight (kDa)

6.15

Isoelectric Point (pI)

53.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LON_substr_bdg	PF02190	11 - 135	1.5e-22	ATP-dependent protease La (LON) substrate-binding domain
Yippee-Mis18	PF03226	355 - 454	1.1e-07	Yippee zinc-binding/DNA-binding /Mis18, centromere assembly

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008459)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25740 AT2G25740
fragaria_vesca	FvH4_2g35320 FvH4_2g35320 FvH4_2g35320 FvH4_2g35320
malus_domestica	MD08G1111400.v1.1 MD15G1090900.v1.1
prunus_persica	Prupe.1G445300_v2.0.a1 Prupe.1G445300_v2.0.a1
pyrus_communis	pycom08g09250 pycom15g08480 pycom15g08490
rosa_chinensis	RchiOBHm_Chr6g0306601
rosa_laevigata	RLG00000010781
rosa_multiflora	Rmu_sc0017624.1_g000002
rosa_roxburghii	Rroxscaffold_7G00161620
rosa_rugosa	Rorug06G0350900
rosa_samantha	Rh6AG463200 Rh6BG437700 Rh6CG477500 Rh6DG464000
rosa_wichuraiana	Rw6G040360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	409, 901
AciI	CCGC	4 cut(s)	18, 23, 230, 1099
AclWI	GGATC	5 cut(s)	179, 493, 604, 658, 755
AcsI	RAATTY	5 cut(s)	475, 517, 564, 635, 1321
AcuI	CTGAAG	1 cut(s)	1031
AcyI	GRCGYC	1 cut(s)	310
AfaI	GTAC	2 cut(s)	372, 1167
AgsI	TTSAA	5 cut(s)	31, 101, 480, 584, 1327
AjnI	CCWGG	1 cut(s)	1243
AloI	GAACNNNNNNTCC	2 cut(s)	1339, 1371
AluBI	AGCT	3 cut(s)	531, 994, 1236
AluI	AGCT	3 cut(s)	531, 994, 1236
Alw21I	GWGCWC	2 cut(s)	133, 544
Alw44I	GTGCAC	1 cut(s)	540
AlwI	GGATC	5 cut(s)	179, 493, 604, 658, 755
AoxI	GGCC	2 cut(s)	430, 821
ApaLI	GTGCAC	1 cut(s)	540
ApeKI	GCWGC	1 cut(s)	392
ApoI	RAATTY	5 cut(s)	475, 517, 564, 635, 1321
ArsI	GACNNNNNNTTYG	2 cut(s)	45, 77
AseI	ATTAAT	1 cut(s)	908
AspLEI	GCGC	1 cut(s)	337
AspS9I	GGNCC	2 cut(s)	822, 1130
AsuHPI	GGTGA	3 cut(s)	560, 635, 934
AvaII	GGWCC	1 cut(s)	1130
BaeGI	GKGCMC	3 cut(s)	544, 698, 904
BanI	GGYRCC	2 cut(s)	409, 901
BanII	GRGCYC	1 cut(s)	385
BarI	GAAGNNNNNNTAC	2 cut(s)	354, 386
BauI	CACGAG	2 cut(s)	468, 1169
Bbv12I	GWGCWC	2 cut(s)	133, 544
BbvI	GCAGC	1 cut(s)	379
BccI	CCATC	6 cut(s)	8, 254, 614, 908, 1001, 1121
BceAI	ACGGC	1 cut(s)	297
BcgI	CGANNNNNNTGC	4 cut(s)	438, 449, 472, 483
BciT130I	CCWGG	1 cut(s)	1245
BfaI	CTAG	2 cut(s)	957, 1112
BfoI	RGCGCY	1 cut(s)	338
BglII	AGATCT	1 cut(s)	403
BisI	GCNGC	1 cut(s)	393
BlsI	GCNGC	1 cut(s)	394
Bme1390I	CCNGG	1 cut(s)	1245
Bme18I	GGWCC	1 cut(s)	1130
BmgT120I	GGNCC	2 cut(s)	822, 1130
BmiI	GGNNCC	3 cut(s)	384, 411, 903
BmrFI	CCNGG	1 cut(s)	1245
BmsI	GCATC	1 cut(s)	729
BplI	GAGNNNNNCTC	2 cut(s)	248, 280
BpuEI	CTTGAG	2 cut(s)	630, 849
BsaAI	YACGTR	1 cut(s)	800
BsaBI	GATNNNNATC	1 cut(s)	655
BsaHI	GRCGYC	1 cut(s)	310
BsaJI	CCNNGG	3 cut(s)	283, 386, 1244
BsaWI	WCCGGW	1 cut(s)	1065
Bse1I	ACTGG	1 cut(s)	1201
Bse3DI	GCAATG	2 cut(s)	456, 683
Bse8I	GATNNNNATC	1 cut(s)	655
BseBI	CCWGG	1 cut(s)	1245
BseDI	CCNNGG	3 cut(s)	283, 386, 1244
BseGI	GGATG	5 cut(s)	19, 265, 499, 746, 919
BseJI	GATNNNNATC	1 cut(s)	655
BseMI	GCAATG	2 cut(s)	456, 683
BseMII	CTCAG	2 cut(s)	522, 690
BseNI	ACTGG	1 cut(s)	1201
BseSI	GKGCMC	3 cut(s)	544, 698, 904
BseXI	GCAGC	1 cut(s)	379
BshFI	GGCC	2 cut(s)	432, 823
BshNI	GGYRCC	2 cut(s)	409, 901
BsiHKAI	GWGCWC	2 cut(s)	133, 544
BsiSI	CCGG	1 cut(s)	1066
BslFI	GGGAC	1 cut(s)	235
BsmFI	GGGAC	1 cut(s)	235
BsmI	GAATGC	2 cut(s)	688, 815
BsnI	GGCC	2 cut(s)	432, 823
Bsp1286I	GDGCHC	5 cut(s)	133, 385, 544, 698, 904
Bsp1407I	TGTACA	1 cut(s)	1165
Bsp143I	GATC	7 cut(s)	184, 403, 485, 596, 650, 760, 934
BspACI	CCGC	4 cut(s)	18, 23, 230, 1099
BspANI	GGCC	2 cut(s)	432, 823
BspCNI	CTCAG	2 cut(s)	521, 691
BspLI	GGNNCC	3 cut(s)	384, 411, 903
BspPI	GGATC	5 cut(s)	179, 493, 604, 658, 755
BspQI	GCTCTTC	1 cut(s)	1307
BspT107I	GGYRCC	2 cut(s)	409, 901
BsrDI	GCAATG	2 cut(s)	456, 683
BsrGI	TGTACA	1 cut(s)	1165
BsrI	ACTGG	1 cut(s)	1201
BssECI	CCNNGG	3 cut(s)	283, 386, 1244
BssMI	GATC	7 cut(s)	184, 403, 485, 596, 650, 760, 934
BssNI	GRCGYC	1 cut(s)	310
BssSI	CACGAG	2 cut(s)	468, 1169
Bst2BI	CACGAG	2 cut(s)	468, 1169
Bst2UI	CCWGG	1 cut(s)	1245
Bst4CI	ACNGT	4 cut(s)	1054, 1087, 1261, 1271
Bst6I	CTCTTC	1 cut(s)	1307
BstACI	GRCGYC	1 cut(s)	310
BstAUI	TGTACA	1 cut(s)	1165
BstBAI	YACGTR	1 cut(s)	800
BstC8I	GCNNGC	1 cut(s)	462
BstDEI	CTNAG	4 cut(s)	89, 305, 508, 699
BstDSI	CCRYGG	2 cut(s)	283, 386
BstEII	GGTNACC	1 cut(s)	277
BstF5I	GGATG	5 cut(s)	19, 265, 499, 746, 919
BstH2I	RGCGCY	1 cut(s)	338
BstHHI	GCGC	1 cut(s)	337
BstKTI	GATC	7 cut(s)	187, 406, 488, 599, 653, 763, 937
BstMBI	GATC	7 cut(s)	184, 403, 485, 596, 650, 760, 934
BstMWI	GCNNNNNNNGC	1 cut(s)	389
BstNI	CCWGG	1 cut(s)	1245
BstNSI	RCATGY	1 cut(s)	844
BstPI	GGTNACC	1 cut(s)	277
BstSCI	CCNGG	1 cut(s)	1243
BstSLI	GKGCMC	3 cut(s)	544, 698, 904
BstSNI	TACGTA	1 cut(s)	800
BstV1I	GCAGC	1 cut(s)	379
BstX2I	RGATCY	5 cut(s)	184, 403, 485, 596, 760
BstXI	CCANNNNNNTGG	1 cut(s)	771
BstYI	RGATCY	5 cut(s)	184, 403, 485, 596, 760
BsuRI	GGCC	2 cut(s)	432, 823
BtgI	CCRYGG	2 cut(s)	283, 386
BtgZI	GCGATG	1 cut(s)	937
BtsCI	GGATG	5 cut(s)	19, 265, 499, 746, 919
BtsI	GCAGTG	2 cut(s)	622, 1227
BtsIMutI	CAGTG	3 cut(s)	266, 622, 1227
Cac8I	GCNNGC	1 cut(s)	462
CfoI	GCGC	1 cut(s)	337
Cfr13I	GGNCC	2 cut(s)	822, 1130
CseI	GACGC	3 cut(s)	83, 155, 318
Csp6I	GTAC	2 cut(s)	371, 1166
CviAII	CATG	2 cut(s)	841, 1254
CviQI	GTAC	2 cut(s)	371, 1166
DdeI	CTNAG	4 cut(s)	89, 305, 508, 699
DpnI	GATC	7 cut(s)	186, 405, 487, 598, 652, 762, 936
DpnII	GATC	7 cut(s)	184, 403, 485, 596, 650, 760, 934
Eam1104I	CTCTTC	1 cut(s)	1307
EarI	CTCTTC	1 cut(s)	1307
EciI	GGCGGA	1 cut(s)	1114
Eco105I	TACGTA	1 cut(s)	800
Eco24I	GRGCYC	1 cut(s)	385
Eco47I	GGWCC	1 cut(s)	1130
Eco57I	CTGAAG	1 cut(s)	1031
Eco91I	GGTNACC	1 cut(s)	277
EcoO65I	GGTNACC	1 cut(s)	277
EcoRI	GAATTC	2 cut(s)	564, 635
EcoRII	CCWGG	1 cut(s)	1243
EcoT22I	ATGCAT	1 cut(s)	1255
EcoT38I	GRGCYC	1 cut(s)	385
FaeI	CATG	2 cut(s)	844, 1257
FaqI	GGGAC	1 cut(s)	235
FatI	CATG	2 cut(s)	840, 1253
Fnu4HI	GCNGC	1 cut(s)	393
FokI	GGATG	5 cut(s)	26, 272, 506, 733, 926
FriOI	GRGCYC	1 cut(s)	385
Fsp4HI	GCNGC	1 cut(s)	393
FspBI	CTAG	2 cut(s)	957, 1112
GlaI	GCGC	1 cut(s)	336
GluI	GCNGC	1 cut(s)	393
HaeII	RGCGCY	1 cut(s)	338
HaeIII	GGCC	2 cut(s)	432, 823
HapII	CCGG	1 cut(s)	1066
HgaI	GACGC	3 cut(s)	83, 155, 318
HhaI	GCGC	1 cut(s)	337
Hin1I	GRCGYC	1 cut(s)	310
Hin1II	CATG	2 cut(s)	844, 1257
Hin6I	GCGC	1 cut(s)	335
HinP1I	GCGC	1 cut(s)	335
HincII	GTYRAC	3 cut(s)	145, 290, 609
HindII	GTYRAC	3 cut(s)	145, 290, 609
HindIII	AAGCTT	1 cut(s)	529
HpaII	CCGG	1 cut(s)	1066
HphI	GGTGA	3 cut(s)	560, 635, 934
Hpy188III	TCNNGA	2 cut(s)	50, 1031
Hpy99I	CGWCG	1 cut(s)	1032
HpyAV	CCTTC	4 cut(s)	47, 92, 323, 465
HpyCH4III	ACNGT	4 cut(s)	1054, 1087, 1261, 1271
HpyCH4IV	ACGT	3 cut(s)	273, 799, 1027
HpyF10VI	GCNNNNNNNGC	1 cut(s)	389
HpyF3I	CTNAG	4 cut(s)	89, 305, 508, 699
HpySE526I	ACGT	3 cut(s)	273, 799, 1027
Hsp92I	GRCGYC	1 cut(s)	310
Hsp92II	CATG	2 cut(s)	844, 1257
HspAI	GCGC	1 cut(s)	335
Kzo9I	GATC	7 cut(s)	184, 403, 485, 596, 650, 760, 934
LguI	GCTCTTC	1 cut(s)	1307
LmnI	GCTCC	5 cut(s)	154, 332, 388, 720, 991
Lsp1109I	GCAGC	1 cut(s)	379
LweI	GCATC	1 cut(s)	729
MaeI	CTAG	2 cut(s)	957, 1112
MaeII	ACGT	3 cut(s)	273, 799, 1027
MaeIII	GTNAC	3 cut(s)	277, 1023, 1261
MalI	GATC	7 cut(s)	186, 405, 487, 598, 652, 762, 936
MboI	GATC	7 cut(s)	184, 403, 485, 596, 650, 760, 934
MboII	GAAGA	6 cut(s)	34, 374, 377, 937, 1052, 1294
MfeI	CAATTG	1 cut(s)	579
MflI	RGATCY	5 cut(s)	184, 403, 485, 596, 760
MhlI	GDGCHC	5 cut(s)	133, 385, 544, 698, 904
MlyI	GAGTC	5 cut(s)	500, 659, 779, 842, 1174
MmeI	TCCRAC	2 cut(s)	296, 752
MnlI	CCTC	5 cut(s)	44, 250, 372, 505, 1143
Mph1103I	ATGCAT	1 cut(s)	1255
MseI	TTAA	2 cut(s)	908, 1056
MslI	CAYNNNNRTG	1 cut(s)	164
MspA1I	CMGCKG	1 cut(s)	1236
MspI	CCGG	1 cut(s)	1066
MspR9I	CCNGG	1 cut(s)	1245
MunI	CAATTG	1 cut(s)	579
Mva1269I	GAATGC	2 cut(s)	688, 815
MvaI	CCWGG	1 cut(s)	1245
MwoI	GCNNNNNNNGC	1 cut(s)	389
NdeII	GATC	7 cut(s)	184, 403, 485, 596, 650, 760, 934
NlaIII	CATG	2 cut(s)	844, 1257
NlaIV	GGNNCC	3 cut(s)	384, 411, 903
NsiI	ATGCAT	1 cut(s)	1255
NspI	RCATGY	1 cut(s)	844
PciSI	GCTCTTC	1 cut(s)	1307
PctI	GAATGC	2 cut(s)	688, 815
PfeI	GAWTC	7 cut(s)	169, 235, 584, 671, 680, 977, 1348
PkrI	GCNGC	1 cut(s)	394
PleI	GAGTC	5 cut(s)	500, 659, 779, 842, 1174
PpsI	GAGTC	5 cut(s)	500, 659, 779, 842, 1174
Ppu21I	YACGTR	1 cut(s)	800
PshBI	ATTAAT	1 cut(s)	908
Psp6I	CCWGG	1 cut(s)	1243
PspEI	GGTNACC	1 cut(s)	277
PspGI	CCWGG	1 cut(s)	1243
PspN4I	GGNNCC	3 cut(s)	384, 411, 903
PspPI	GGNCC	2 cut(s)	822, 1130
PsuI	RGATCY	5 cut(s)	184, 403, 485, 596, 760
PvuII	CAGCTG	1 cut(s)	1236
RsaI	GTAC	2 cut(s)	372, 1167
RsaNI	GTAC	2 cut(s)	371, 1166
RseI	CAYNNNNRTG	1 cut(s)	164
SapI	GCTCTTC	1 cut(s)	1307
SaqAI	TTAA	2 cut(s)	908, 1056
SatI	GCNGC	1 cut(s)	393
Sau3AI	GATC	7 cut(s)	184, 403, 485, 596, 650, 760, 934
Sau96I	GGNCC	2 cut(s)	822, 1130
SchI	GAGTC	5 cut(s)	500, 659, 779, 842, 1174
ScrFI	CCNGG	1 cut(s)	1245
SduI	GDGCHC	5 cut(s)	133, 385, 544, 698, 904
SfaNI	GCATC	1 cut(s)	729
SinI	GGWCC	1 cut(s)	1130
SmiMI	CAYNNNNRTG	1 cut(s)	164
SmlI	CTYRAG	2 cut(s)	645, 864
SmoI	CTYRAG	2 cut(s)	645, 864
SnaBI	TACGTA	1 cut(s)	800
SsiI	CCGC	4 cut(s)	18, 23, 230, 1099
SspI	AATATT	1 cut(s)	217
SspMI	CTAG	2 cut(s)	957, 1112
StyD4I	CCNGG	1 cut(s)	1243
TaaI	ACNGT	4 cut(s)	1054, 1087, 1261, 1271
TaiI	ACGT	3 cut(s)	276, 802, 1030
TaqI	TCGA	2 cut(s)	51, 424
TatI	WGTACW	1 cut(s)	1165
TfiI	GAWTC	7 cut(s)	169, 235, 584, 671, 680, 977, 1348
Tru1I	TTAA	2 cut(s)	908, 1056
Tru9I	TTAA	2 cut(s)	908, 1056
TscAI	CASTG	3 cut(s)	273, 622, 1227
TseI	GCWGC	1 cut(s)	392
TspDTI	ATGAA	3 cut(s)	540, 672, 1005
TspRI	CASTG	3 cut(s)	273, 622, 1227
VneI	GTGCAC	1 cut(s)	540
VpaK11BI	GGWCC	1 cut(s)	1130
VspI	ATTAAT	1 cut(s)	908
XapI	RAATTY	5 cut(s)	475, 517, 564, 635, 1321
XceI	RCATGY	1 cut(s)	844
XcmI	CCANNNNNNNNNTGG	1 cut(s)	816
XspI	CTAG	2 cut(s)	957, 1112
Zsp2I	ATGCAT	1 cut(s)	1255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.