Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0008459

Physical Location & Seq

Genomic Coordinates Forward (+)

4300736 .. 4305211

Gene Structure 4476 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010781

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGGCCGACAACGAACGCCTTCTGGCGAGAGAGCGGCTACAGATCGAGCAGATTCGAGCACTCGATCTCGAGGAGCTGGAGGTCGAGGAGGTCGATGACGACTACAACGACGACTCTTCCGCCGACGACGCCGCCGCCACTGGTCGCGGCATGGCTGATGAATATACCTTCAATACTTGTTTGGCTTCGTTGCATACATATCTTGGAGAGGTTGAAGACACTCATCATAGGATGGCGTTTTTGGATGCCGGTGCGGTATTGAACCTCCCAATCTTCTATCTCGAAGGAGTTGTCCTGTTCCCTGACGCTACCCTTCCACTAAGAGTCATTCAACCCAATTTTGTAGTTGCTATTGAGAGAGCACTATCCCAAGTTGACGCTCCTTATACCATTGGTGTGATTCGTGTTTACAGAGATCCCAACAATAGAAGCATAAAGTTTGCAAATATTGGGACAACTGCGGAGATTCGCCAATATAGGAGATTAGAGGATGGCTCACTGAACGTGGTAACCCGTGGTCAACAGCGATTTCGTCTTAGACGCCGTTGGATTGATGTGGAAGGAGCGCCATACGGGGAAATCCAAATTATAGAAGAAGATGTACCATTGAGGGCTCCACGGGCTGCATTTGGAGATCTGGCACCATTTAGTAGTCGAAAAGGCCATAGTTTCCAGTGTGCAATGCCTTCGCACGCTTCTCGTGGAAATTCAAATGGATCTATGGATGTGGACAATGACTCAGAGGCAAATTCAGATGAAAGCTTTGAGAGTGCACTTTCTTTGACAGAAAAGGGAATTCACCGATCTGCAATTGAATCCTATTATGGATCTGATGTAATGTCAACAAGCAGTGATGGTGAGAAGTCAGAATTCTTAGCTCAAGGATCACAATCAAAAGACTCTGATTCCACAGATTCATTGCATTCGTGCCCTGAGAGTTTGGTTGATTTGGGGAGCAGTTCCATATCGGAGATGCAATCATCCAAACAGAAAGATCCAAGTAGTTGGAGAAATACAGACTCTAAACAGATACGTAGAGTTCCAAGAGCATTCTGGCCCTATTGGGTATATCGCATGTATGACTCCTATTGTCTTGCTCAAGGAGTGGCAGGTAGTTTTACTTTGCTTTGGTTCACACCTGATTTCCAAGTTCTTAAAGATTCCTTGATATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0002009 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0007423 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009790 GO:0009887 GO:0009888 GO:0009987 GO:0010498 GO:0016567 GO:0019538 GO:0019941 GO:0030163 GO:0031461 GO:0031464 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0033333 GO:0033334 GO:0033339 GO:0035107 GO:0035113 GO:0035118 GO:0035138 GO:0035239 GO:0035295 GO:0036211 GO:0042471 GO:0042472 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043583 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048513 GO:0048562 GO:0048568 GO:0048598 GO:0048729 GO:0048731 GO:0048736 GO:0048839 GO:0048856 GO:0051603 GO:0060173 GO:0060429 GO:0060562 GO:0070647 GO:0071599 GO:0071600 GO:0071704 GO:0080008 GO:0090596 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LON_substr_bdg Yippee-Mis18

Protein Analysis

392

Amino Acids

43.89

Weight (kDa)

4.7

Isoelectric Point (pI)

54.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LON_substr_bdg	PF02190	88 - 209	1.1e-22	ATP-dependent protease La (LON) substrate-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008459)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25740 AT2G25740
fragaria_vesca	FvH4_2g35320 FvH4_2g35320 FvH4_2g35320 FvH4_2g35320
malus_domestica	MD08G1111400.v1.1 MD15G1090900.v1.1
prunus_persica	Prupe.1G445300_v2.0.a1 Prupe.1G445300_v2.0.a1
pyrus_communis	pycom08g09250 pycom15g08480 pycom15g08490
rosa_chinensis	RchiOBHm_Chr6g0306601
rosa_laevigata	RLG00000010781
rosa_multiflora	Rmu_sc0017624.1_g000002
rosa_roxburghii	Rroxscaffold_7G00161620
rosa_rugosa	Rorug06G0350900
rosa_samantha	Rh6AG463200 Rh6BG437700 Rh6CG477500 Rh6DG464000
rosa_wichuraiana	Rw6G040360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1100
AccB1I	GGYRCC	1 cut(s)	640
AccBSI	CCGCTC	1 cut(s)	34
AccII	CGCG	1 cut(s)	147
AciI	CCGC	7 cut(s)	34, 120, 132, 135, 147, 254, 461
AclWI	GGATC	5 cut(s)	410, 724, 835, 892, 989
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	4 cut(s)	706, 748, 795, 869
AcyI	GRCGYC	2 cut(s)	129, 541
AfaI	GTAC	1 cut(s)	603
AgsI	TTSAA	6 cut(s)	172, 215, 262, 332, 711, 815
AluBI	AGCT	3 cut(s)	76, 762, 878
AluI	AGCT	3 cut(s)	76, 762, 878
Alw21I	GWGCWC	3 cut(s)	61, 364, 775
Alw44I	GTGCAC	1 cut(s)	771
AlwI	GGATC	5 cut(s)	410, 724, 835, 892, 989
Ama87I	CYCGRG	1 cut(s)	68
AoxI	GGCC	3 cut(s)	3, 661, 1055
ApaLI	GTGCAC	1 cut(s)	771
ApeKI	GCWGC	1 cut(s)	623
ApoI	RAATTY	4 cut(s)	706, 748, 795, 869
ArsI	GACNNNNNNTTYG	2 cut(s)	276, 308
Asp700I	GAANNNNTTC	1 cut(s)	18
AspLEI	GCGC	1 cut(s)	568
AspS9I	GGNCC	1 cut(s)	1056
AsuHPI	GGTGA	2 cut(s)	791, 869
AvaI	CYCGRG	1 cut(s)	68
BaeGI	GKGCMC	2 cut(s)	775, 932
BanI	GGYRCC	1 cut(s)	640
BanII	GRGCYC	1 cut(s)	616
BarI	GAAGNNNNNNTAC	2 cut(s)	585, 617
BauI	CACGAG	1 cut(s)	699
BbsI	GAAGAC	1 cut(s)	222
Bbv12I	GWGCWC	3 cut(s)	61, 364, 775
BbvI	GCAGC	1 cut(s)	610
BccI	CCATC	3 cut(s)	226, 485, 848
BceAI	ACGGC	1 cut(s)	528
BcgI	CGANNNNNNTGC	4 cut(s)	669, 680, 703, 714
BfmI	CTRYAG	1 cut(s)	38
BfoI	RGCGCY	1 cut(s)	569
BfuAI	ACCTGC	1 cut(s)	1100
BglII	AGATCT	1 cut(s)	634
BisI	GCNGC	5 cut(s)	35, 132, 135, 148, 624
BlsI	GCNGC	5 cut(s)	36, 133, 136, 149, 625
BmeT110I	CYCGRG	1 cut(s)	68
BmgT120I	GGNCC	1 cut(s)	1056
BmiI	GGNNCC	2 cut(s)	615, 642
BmsI	GCATC	2 cut(s)	235, 963
BpiI	GAAGAC	1 cut(s)	222
BplI	GAGNNNNNCTC	2 cut(s)	479, 511
BpmI	CTGGAG	1 cut(s)	98
BpuEI	CTTGAG	2 cut(s)	864, 1083
BsaAI	YACGTR	1 cut(s)	1034
BsaBI	GATNNNNATC	1 cut(s)	889
BsaHI	GRCGYC	2 cut(s)	129, 541
BsaJI	CCNNGG	2 cut(s)	514, 617
Bse118I	RCCGGY	1 cut(s)	248
Bse1I	ACTGG	2 cut(s)	145, 673
Bse3DI	GCAATG	2 cut(s)	687, 917
Bse8I	GATNNNNATC	1 cut(s)	889
BseDI	CCNNGG	2 cut(s)	514, 617
BseGI	GGATG	5 cut(s)	237, 250, 496, 730, 980
BseJI	GATNNNNATC	1 cut(s)	889
BseMI	GCAATG	2 cut(s)	687, 917
BseMII	CTCAG	2 cut(s)	753, 924
BseNI	ACTGG	2 cut(s)	145, 673
BseRI	GAGGAG	2 cut(s)	86, 101
BseSI	GKGCMC	2 cut(s)	775, 932
BseXI	GCAGC	1 cut(s)	610
Bsh1236I	CGCG	1 cut(s)	147
BshFI	GGCC	3 cut(s)	5, 663, 1057
BshNI	GGYRCC	1 cut(s)	640
BsiHKAI	GWGCWC	3 cut(s)	61, 364, 775
BsiHKCI	CYCGRG	1 cut(s)	68
BsiSI	CCGG	1 cut(s)	249
BslFI	GGGAC	1 cut(s)	466
BsmFI	GGGAC	1 cut(s)	466
BsmI	GAATGC	2 cut(s)	922, 1049
BsnI	GGCC	3 cut(s)	5, 663, 1057
BsoBI	CYCGRG	1 cut(s)	68
Bsp1286I	GDGCHC	5 cut(s)	61, 364, 616, 775, 932
Bsp143I	GATC	9 cut(s)	42, 64, 415, 634, 716, 803, 827, 884, 994
BspACI	CCGC	7 cut(s)	34, 120, 132, 135, 147, 254, 461
BspANI	GGCC	3 cut(s)	5, 663, 1057
BspCNI	CTCAG	2 cut(s)	752, 925
BspFNI	CGCG	1 cut(s)	147
BspLI	GGNNCC	2 cut(s)	615, 642
BspMI	ACCTGC	1 cut(s)	1100
BspPI	GGATC	5 cut(s)	410, 724, 835, 892, 989
BspT107I	GGYRCC	1 cut(s)	640
BsrBI	CCGCTC	1 cut(s)	34
BsrDI	GCAATG	2 cut(s)	687, 917
BsrFI	RCCGGY	1 cut(s)	248
BsrI	ACTGG	2 cut(s)	145, 673
BssAI	RCCGGY	1 cut(s)	248
BssECI	CCNNGG	2 cut(s)	514, 617
BssMI	GATC	9 cut(s)	42, 64, 415, 634, 716, 803, 827, 884, 994
BssNI	GRCGYC	2 cut(s)	129, 541
BssSI	CACGAG	1 cut(s)	699
Bst2BI	CACGAG	1 cut(s)	699
Bst6I	CTCTTC	1 cut(s)	121
BstACI	GRCGYC	2 cut(s)	129, 541
BstBAI	YACGTR	1 cut(s)	1034
BstC8I	GCNNGC	1 cut(s)	693
BstDEI	CTNAG	5 cut(s)	320, 536, 739, 874, 933
BstDSI	CCRYGG	2 cut(s)	514, 617
BstEII	GGTNACC	1 cut(s)	508
BstF5I	GGATG	5 cut(s)	237, 250, 496, 730, 980
BstFNI	CGCG	1 cut(s)	147
BstH2I	RGCGCY	1 cut(s)	569
BstHHI	GCGC	1 cut(s)	568
BstKTI	GATC	9 cut(s)	45, 67, 418, 637, 719, 806, 830, 887, 997
BstMBI	GATC	9 cut(s)	42, 64, 415, 634, 716, 803, 827, 884, 994
BstMWI	GCNNNNNNNGC	2 cut(s)	128, 620
BstNSI	RCATGY	1 cut(s)	1078
BstPI	GGTNACC	1 cut(s)	508
BstSFI	CTRYAG	1 cut(s)	38
BstSLI	GKGCMC	2 cut(s)	775, 932
BstSNI	TACGTA	1 cut(s)	1034
BstUI	CGCG	1 cut(s)	147
BstV1I	GCAGC	1 cut(s)	610
BstV2I	GAAGAC	1 cut(s)	222
BstX2I	RGATCY	5 cut(s)	415, 634, 716, 827, 994
BstXI	CCANNNNNNTGG	1 cut(s)	1005
BstYI	RGATCY	5 cut(s)	415, 634, 716, 827, 994
BsuRI	GGCC	3 cut(s)	5, 663, 1057
BtgI	CCRYGG	2 cut(s)	514, 617
BtsCI	GGATG	5 cut(s)	237, 250, 496, 730, 980
BtsI	GCAGTG	1 cut(s)	856
BtsIMutI	CAGTG	4 cut(s)	138, 497, 680, 856
BveI	ACCTGC	1 cut(s)	1100
Cac8I	GCNNGC	1 cut(s)	693
CfoI	GCGC	1 cut(s)	568
Cfr10I	RCCGGY	1 cut(s)	248
Cfr13I	GGNCC	1 cut(s)	1056
CseI	GACGC	4 cut(s)	137, 314, 386, 549
Csp6I	GTAC	1 cut(s)	602
CviAII	CATG	2 cut(s)	151, 1075
CviQI	GTAC	1 cut(s)	602
DdeI	CTNAG	5 cut(s)	320, 536, 739, 874, 933
DpnI	GATC	9 cut(s)	44, 66, 417, 636, 718, 805, 829, 886, 996
DpnII	GATC	9 cut(s)	42, 64, 415, 634, 716, 803, 827, 884, 994
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	121
EarI	CTCTTC	1 cut(s)	121
EciI	GGCGGA	1 cut(s)	109
Eco105I	TACGTA	1 cut(s)	1034
Eco24I	GRGCYC	1 cut(s)	616
Eco88I	CYCGRG	1 cut(s)	68
Eco91I	GGTNACC	1 cut(s)	508
EcoO65I	GGTNACC	1 cut(s)	508
EcoRI	GAATTC	2 cut(s)	795, 869
EcoT38I	GRGCYC	1 cut(s)	616
FaeI	CATG	2 cut(s)	154, 1078
FaqI	GGGAC	1 cut(s)	466
FatI	CATG	2 cut(s)	150, 1074
Fnu4HI	GCNGC	5 cut(s)	35, 132, 135, 148, 624
FokI	GGATG	5 cut(s)	244, 257, 503, 737, 967
FriOI	GRGCYC	1 cut(s)	616
Fsp4HI	GCNGC	5 cut(s)	35, 132, 135, 148, 624
GlaI	GCGC	1 cut(s)	567
GluI	GCNGC	5 cut(s)	35, 132, 135, 148, 624
GsuI	CTGGAG	1 cut(s)	98
HaeII	RGCGCY	1 cut(s)	569
HaeIII	GGCC	3 cut(s)	5, 663, 1057
HapII	CCGG	1 cut(s)	249
HgaI	GACGC	4 cut(s)	137, 314, 386, 549
HhaI	GCGC	1 cut(s)	568
Hin1I	GRCGYC	2 cut(s)	129, 541
Hin1II	CATG	2 cut(s)	154, 1078
Hin6I	GCGC	1 cut(s)	566
HinP1I	GCGC	1 cut(s)	566
HincII	GTYRAC	3 cut(s)	376, 521, 843
HindII	GTYRAC	3 cut(s)	376, 521, 843
HindIII	AAGCTT	1 cut(s)	760
HpaII	CCGG	1 cut(s)	249
HphI	GGTGA	2 cut(s)	791, 869
Hpy166II	GTNNAC	7 cut(s)	376, 409, 521, 730, 773, 843, 1134
Hpy188I	TCNGA	6 cut(s)	742, 754, 832, 868, 904, 970
Hpy188III	TCNNGA	2 cut(s)	68, 281
Hpy8I	GTNNAC	7 cut(s)	376, 409, 521, 730, 773, 843, 1134
Hpy99I	CGWCG	3 cut(s)	113, 128, 131
HpyAV	CCTTC	6 cut(s)	29, 178, 278, 323, 554, 696
HpyCH4IV	ACGT	2 cut(s)	504, 1033
HpyCH4V	TGCA	8 cut(s)	193, 443, 626, 680, 773, 809, 922, 976
HpyF10VI	GCNNNNNNNGC	2 cut(s)	128, 620
HpyF3I	CTNAG	5 cut(s)	320, 536, 739, 874, 933
HpySE526I	ACGT	2 cut(s)	504, 1033
Hsp92I	GRCGYC	2 cut(s)	129, 541
Hsp92II	CATG	2 cut(s)	154, 1078
HspAI	GCGC	1 cut(s)	566
Kzo9I	GATC	9 cut(s)	42, 64, 415, 634, 716, 803, 827, 884, 994
LmnI	GCTCC	5 cut(s)	73, 385, 563, 619, 954
Lsp1109I	GCAGC	1 cut(s)	610
LweI	GCATC	2 cut(s)	235, 963
MaeII	ACGT	2 cut(s)	504, 1033
MaeIII	GTNAC	1 cut(s)	508
MalI	GATC	9 cut(s)	44, 66, 417, 636, 718, 805, 829, 886, 996
MbiI	CCGCTC	1 cut(s)	34
MboI	GATC	9 cut(s)	42, 64, 415, 634, 716, 803, 827, 884, 994
MboII	GAAGA	5 cut(s)	108, 227, 265, 605, 608
MfeI	CAATTG	1 cut(s)	810
MflI	RGATCY	5 cut(s)	415, 634, 716, 827, 994
MhlI	GDGCHC	5 cut(s)	61, 364, 616, 775, 932
MluCI	AATT	7 cut(s)	337, 585, 706, 748, 795, 810, 869
MlyI	GAGTC	6 cut(s)	107, 333, 731, 893, 1013, 1076
MmeI	TCCRAC	2 cut(s)	527, 986
MnlI	CCTC	9 cut(s)	64, 73, 79, 82, 202, 275, 481, 603, 736
MroXI	GAANNNNTTC	1 cut(s)	18
MseI	TTAA	1 cut(s)	1155
MslI	CAYNNNNRTG	1 cut(s)	395
MspI	CCGG	1 cut(s)	249
MunI	CAATTG	1 cut(s)	810
Mva1269I	GAATGC	2 cut(s)	922, 1049
MvnI	CGCG	1 cut(s)	147
MwoI	GCNNNNNNNGC	2 cut(s)	128, 620
NdeII	GATC	9 cut(s)	42, 64, 415, 634, 716, 803, 827, 884, 994
NlaIII	CATG	2 cut(s)	154, 1078
NlaIV	GGNNCC	2 cut(s)	615, 642
NspI	RCATGY	1 cut(s)	1078
PaeR7I	CTCGAG	1 cut(s)	68
PcsI	WCGNNNNNNNCGW	2 cut(s)	90, 105
PctI	GAATGC	2 cut(s)	922, 1049
PdmI	GAANNNNTTC	1 cut(s)	18
PfeI	GAWTC	7 cut(s)	52, 400, 466, 815, 905, 914, 1160
PkrI	GCNGC	5 cut(s)	36, 133, 136, 149, 625
PleI	GAGTC	6 cut(s)	107, 332, 731, 893, 1013, 1076
PpsI	GAGTC	6 cut(s)	107, 332, 731, 893, 1013, 1076
Ppu21I	YACGTR	1 cut(s)	1034
PspEI	GGTNACC	1 cut(s)	508
PspN4I	GGNNCC	2 cut(s)	615, 642
PspPI	GGNCC	1 cut(s)	1056
PsuI	RGATCY	5 cut(s)	415, 634, 716, 827, 994
RsaI	GTAC	1 cut(s)	603
RsaNI	GTAC	1 cut(s)	602
RseI	CAYNNNNRTG	1 cut(s)	395
SaqAI	TTAA	1 cut(s)	1155
SatI	GCNGC	5 cut(s)	35, 132, 135, 148, 624
Sau3AI	GATC	9 cut(s)	42, 64, 415, 634, 716, 803, 827, 884, 994
Sau96I	GGNCC	1 cut(s)	1056
SchI	GAGTC	6 cut(s)	107, 333, 731, 893, 1013, 1076
SduI	GDGCHC	5 cut(s)	61, 364, 616, 775, 932
SfaNI	GCATC	2 cut(s)	235, 963
SfcI	CTRYAG	1 cut(s)	38
Sfr274I	CTCGAG	1 cut(s)	68
SlaI	CTCGAG	1 cut(s)	68
SmiMI	CAYNNNNRTG	1 cut(s)	395
SmlI	CTYRAG	3 cut(s)	68, 879, 1098
SmoI	CTYRAG	3 cut(s)	68, 879, 1098
SnaBI	TACGTA	1 cut(s)	1034
Sse9I	AATT	7 cut(s)	337, 585, 706, 748, 795, 810, 869
SsiI	CCGC	7 cut(s)	34, 120, 132, 135, 147, 254, 461
SspI	AATATT	1 cut(s)	448
TaiI	ACGT	2 cut(s)	507, 1036
TaqI	TCGA	8 cut(s)	45, 55, 63, 69, 84, 93, 282, 655
TasI	AATT	7 cut(s)	337, 585, 706, 748, 795, 810, 869
TauI	GCSGC	4 cut(s)	37, 134, 137, 150
TfiI	GAWTC	7 cut(s)	52, 400, 466, 815, 905, 914, 1160
Tru1I	TTAA	1 cut(s)	1155
Tru9I	TTAA	1 cut(s)	1155
TscAI	CASTG	4 cut(s)	145, 504, 680, 856
TseI	GCWGC	1 cut(s)	623
TspDTI	ATGAA	3 cut(s)	174, 771, 906
TspRI	CASTG	4 cut(s)	145, 504, 680, 856
VneI	GTGCAC	1 cut(s)	771
XapI	RAATTY	4 cut(s)	706, 748, 795, 869
XceI	RCATGY	1 cut(s)	1078
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1050
XhoI	CTCGAG	1 cut(s)	68
XmnI	GAANNNNTTC	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.