Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0008459

Physical Location & Seq

Genomic Coordinates Reverse (-)

64604894 .. 64609219

Gene Structure 4326 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG463200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGCCTTCGCACGCTTCTCGTGGAAATTCAAATGGTTCTATGGATGTGGACAATGACTCAGAGGCAAATTCAGATGAAAGCTTTGAGAGTGCACTTTCTTTGACAGAAAAGGGAATTCACCAATCTGCAATTGAATCCTATTATGGATCTGATGTGTCAACAAGCAGTGATGGTGAGAAGTCAGAATTCTTATCTCAAGGATCACAATCGAAAGACTCTGATTCCACAGATTCATTGCATTCGTGCCCTGAGAGTTTGGTTGATTTGGGGAGCAGTTCCATATCGGAGATGCAATCATCCAAACAGAAAGATCCAAGTAGTTGGAGAAATACAGACTATAAACAGATACGTAGAGTTCCAAGAGCATTCTGGCCCTATTGGGTATATCGCATGTATGACTCCTATTGTCTTGCTCAAGGAGTGGCAGATATGTGGAAACAGATAGTTGGGGCACCATTAATGGATGGTCTGGTGAAGAAGCCTGATCTTTTGTCATTTTACATCGCTAGTAAACTTCCTGTTTCTGAATCTACAAGGCAGGAGCTTTTGGAGATTGATGGTATTTCATATAGGTTACGTCGGGAAATTGAGTTGCTTCAGACTGTTAATCTTCTCCGGTGTAAAACTTGTCAGACTGTTTTTGCAAGGCGGAGTGATATGCTAGTGATGTCAAGTGATGGTCCTCTTGGTGCTTATGTAAACCCCTATGGTTGTGTGCACGAGATAATGACTCTCTACAAAGCAACTGGCTTGGCACTCGTAGGTTCAGCAGTGAAAGAATACAGCTGGTTTCCTGGGTATGCATGGACAGTAACAAACTGTGCCACCTGTGAAACTCAAATGGGTTGGCTCTTCACAGCCACAAAAAAGAATTTGAAGCCTAAATTGTTTTGGGGGATTCGGAGTTCCCAAGTTTCTGATGACTTGCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0002009 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0007423 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009790 GO:0009887 GO:0009888 GO:0009987 GO:0010498 GO:0016567 GO:0019538 GO:0019941 GO:0030163 GO:0031461 GO:0031464 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0033333 GO:0033334 GO:0033339 GO:0035107 GO:0035113 GO:0035118 GO:0035138 GO:0035239 GO:0035295 GO:0036211 GO:0042471 GO:0042472 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043583 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048513 GO:0048562 GO:0048568 GO:0048598 GO:0048729 GO:0048731 GO:0048736 GO:0048839 GO:0048856 GO:0051603 GO:0060173 GO:0060429 GO:0060562 GO:0070647 GO:0071599 GO:0071600 GO:0071704 GO:0080008 GO:0090596 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LON_substr_bdg Yippee-Mis18

Protein Analysis

310

Amino Acids

34.64

Weight (kDa)

5.34

Isoelectric Point (pI)

51.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Yippee-Mis18	PF03226	205 - 304	5.3e-08	Yippee zinc-binding/DNA-binding /Mis18, centromere assembly

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008459)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25740 AT2G25740
fragaria_vesca	FvH4_2g35320 FvH4_2g35320 FvH4_2g35320 FvH4_2g35320
malus_domestica	MD08G1111400.v1.1 MD15G1090900.v1.1
prunus_persica	Prupe.1G445300_v2.0.a1 Prupe.1G445300_v2.0.a1
pyrus_communis	pycom08g09250 pycom15g08480 pycom15g08490
rosa_chinensis	RchiOBHm_Chr6g0306601
rosa_laevigata	RLG00000010781
rosa_multiflora	Rmu_sc0017624.1_g000002
rosa_roxburghii	Rroxscaffold_7G00161620
rosa_rugosa	Rorug06G0350900
rosa_samantha	Rh6AG463200 Rh6BG437700 Rh6CG477500 Rh6DG464000
rosa_wichuraiana	Rw6G040360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	451
AciI	CCGC	1 cut(s)	649
AclWI	GGATC	3 cut(s)	154, 208, 305
AcsI	RAATTY	5 cut(s)	25, 67, 114, 185, 871
AcuI	CTGAAG	1 cut(s)	581
AgsI	TTSAA	3 cut(s)	30, 134, 877
AjnI	CCWGG	1 cut(s)	793
AloI	GAACNNNNNNTCC	2 cut(s)	889, 921
AluBI	AGCT	3 cut(s)	81, 544, 786
AluI	AGCT	3 cut(s)	81, 544, 786
Alw21I	GWGCWC	2 cut(s)	94, 720
Alw44I	GTGCAC	2 cut(s)	90, 716
AlwI	GGATC	3 cut(s)	154, 208, 305
AoxI	GGCC	1 cut(s)	371
ApaLI	GTGCAC	2 cut(s)	90, 716
ApoI	RAATTY	5 cut(s)	25, 67, 114, 185, 871
AseI	ATTAAT	1 cut(s)	458
AspS9I	GGNCC	2 cut(s)	372, 680
AsuHPI	GGTGA	3 cut(s)	110, 185, 484
AvaII	GGWCC	1 cut(s)	680
BaeGI	GKGCMC	4 cut(s)	94, 248, 454, 720
BanI	GGYRCC	1 cut(s)	451
BauI	CACGAG	2 cut(s)	18, 719
Bbv12I	GWGCWC	2 cut(s)	94, 720
BccI	CCATC	4 cut(s)	164, 458, 551, 671
BcgI	CGANNNNNNTGC	1 cut(s)	33
BciT130I	CCWGG	1 cut(s)	795
BfaI	CTAG	2 cut(s)	507, 662
Bme1390I	CCNGG	1 cut(s)	795
Bme18I	GGWCC	1 cut(s)	680
BmgT120I	GGNCC	2 cut(s)	372, 680
BmiI	GGNNCC	1 cut(s)	453
BmrFI	CCNGG	1 cut(s)	795
BmsI	GCATC	1 cut(s)	279
BpuEI	CTTGAG	2 cut(s)	180, 399
BsaAI	YACGTR	1 cut(s)	350
BsaBI	GATNNNNATC	1 cut(s)	205
BsaJI	CCNNGG	1 cut(s)	794
BsaWI	WCCGGW	1 cut(s)	615
Bse1I	ACTGG	1 cut(s)	751
Bse3DI	GCAATG	1 cut(s)	233
Bse8I	GATNNNNATC	1 cut(s)	205
BseBI	CCWGG	1 cut(s)	795
BseDI	CCNNGG	1 cut(s)	794
BseGI	GGATG	3 cut(s)	49, 296, 469
BseJI	GATNNNNATC	1 cut(s)	205
BseMI	GCAATG	1 cut(s)	233
BseMII	CTCAG	2 cut(s)	72, 240
BseNI	ACTGG	1 cut(s)	751
BseSI	GKGCMC	4 cut(s)	94, 248, 454, 720
BshFI	GGCC	1 cut(s)	373
BshNI	GGYRCC	1 cut(s)	451
BsiHKAI	GWGCWC	2 cut(s)	94, 720
BsiSI	CCGG	1 cut(s)	616
BsmI	GAATGC	2 cut(s)	238, 365
BsnI	GGCC	1 cut(s)	373
Bsp1286I	GDGCHC	4 cut(s)	94, 248, 454, 720
Bsp143I	GATC	4 cut(s)	146, 200, 310, 484
BspACI	CCGC	1 cut(s)	649
BspANI	GGCC	1 cut(s)	373
BspCNI	CTCAG	2 cut(s)	71, 241
BspLI	GGNNCC	1 cut(s)	453
BspPI	GGATC	3 cut(s)	154, 208, 305
BspQI	GCTCTTC	1 cut(s)	857
BspT107I	GGYRCC	1 cut(s)	451
BsrDI	GCAATG	1 cut(s)	233
BsrI	ACTGG	1 cut(s)	751
BssECI	CCNNGG	1 cut(s)	794
BssMI	GATC	4 cut(s)	146, 200, 310, 484
BssSI	CACGAG	2 cut(s)	18, 719
Bst2BI	CACGAG	2 cut(s)	18, 719
Bst2UI	CCWGG	1 cut(s)	795
Bst4CI	ACNGT	4 cut(s)	604, 637, 811, 821
Bst6I	CTCTTC	1 cut(s)	857
BstBAI	YACGTR	1 cut(s)	350
BstC8I	GCNNGC	1 cut(s)	12
BstDEI	CTNAG	2 cut(s)	58, 249
BstF5I	GGATG	3 cut(s)	49, 296, 469
BstKTI	GATC	4 cut(s)	149, 203, 313, 487
BstMBI	GATC	4 cut(s)	146, 200, 310, 484
BstNI	CCWGG	1 cut(s)	795
BstNSI	RCATGY	1 cut(s)	394
BstSCI	CCNGG	1 cut(s)	793
BstSLI	GKGCMC	4 cut(s)	94, 248, 454, 720
BstSNI	TACGTA	1 cut(s)	350
BstX2I	RGATCY	2 cut(s)	146, 310
BstXI	CCANNNNNNTGG	1 cut(s)	321
BstYI	RGATCY	2 cut(s)	146, 310
BsuRI	GGCC	1 cut(s)	373
BtgZI	GCGATG	1 cut(s)	487
BtsCI	GGATG	3 cut(s)	49, 296, 469
BtsI	GCAGTG	2 cut(s)	172, 777
BtsIMutI	CAGTG	2 cut(s)	172, 777
Cac8I	GCNNGC	1 cut(s)	12
Cfr13I	GGNCC	2 cut(s)	372, 680
CviAII	CATG	2 cut(s)	391, 804
CviJI	RGCY	9 cut(s)	81, 373, 481, 544, 750, 786, 850, 860, 880
CviKI_1	RGCY	9 cut(s)	81, 373, 481, 544, 750, 786, 850, 860, 880
DdeI	CTNAG	2 cut(s)	58, 249
DpnI	GATC	4 cut(s)	148, 202, 312, 486
DpnII	GATC	4 cut(s)	146, 200, 310, 484
Eam1104I	CTCTTC	1 cut(s)	857
EarI	CTCTTC	1 cut(s)	857
EciI	GGCGGA	1 cut(s)	664
Eco105I	TACGTA	1 cut(s)	350
Eco47I	GGWCC	1 cut(s)	680
Eco57I	CTGAAG	1 cut(s)	581
EcoRI	GAATTC	2 cut(s)	114, 185
EcoRII	CCWGG	1 cut(s)	793
EcoT22I	ATGCAT	1 cut(s)	805
FaeI	CATG	2 cut(s)	394, 807
FatI	CATG	2 cut(s)	390, 803
FokI	GGATG	3 cut(s)	56, 283, 476
FspBI	CTAG	2 cut(s)	507, 662
HaeIII	GGCC	1 cut(s)	373
HapII	CCGG	1 cut(s)	616
Hin1II	CATG	2 cut(s)	394, 807
HincII	GTYRAC	1 cut(s)	159
HindII	GTYRAC	1 cut(s)	159
HindIII	AAGCTT	1 cut(s)	79
HinfI	GANTC	9 cut(s)	56, 134, 215, 221, 230, 398, 527, 730, 898
HpaII	CCGG	1 cut(s)	616
HphI	GGTGA	3 cut(s)	110, 185, 484
Hpy166II	GTNNAC	6 cut(s)	49, 92, 159, 512, 700, 718
Hpy188III	TCNNGA	1 cut(s)	581
Hpy8I	GTNNAC	6 cut(s)	49, 92, 159, 512, 700, 718
Hpy99I	CGWCG	1 cut(s)	582
HpyAV	CCTTC	1 cut(s)	15
HpyCH4III	ACNGT	4 cut(s)	604, 637, 811, 821
HpyCH4IV	ACGT	2 cut(s)	349, 577
HpyCH4V	TGCA	8 cut(s)	92, 128, 238, 292, 644, 718, 803, 928
HpyF3I	CTNAG	2 cut(s)	58, 249
HpySE526I	ACGT	2 cut(s)	349, 577
Hsp92II	CATG	2 cut(s)	394, 807
Kzo9I	GATC	4 cut(s)	146, 200, 310, 484
LguI	GCTCTTC	1 cut(s)	857
LmnI	GCTCC	2 cut(s)	270, 541
LweI	GCATC	1 cut(s)	279
MaeI	CTAG	2 cut(s)	507, 662
MaeII	ACGT	2 cut(s)	349, 577
MaeIII	GTNAC	2 cut(s)	573, 811
MalI	GATC	4 cut(s)	148, 202, 312, 486
MboI	GATC	4 cut(s)	146, 200, 310, 484
MboII	GAAGA	3 cut(s)	487, 602, 844
MfeI	CAATTG	1 cut(s)	129
MflI	RGATCY	2 cut(s)	146, 310
MhlI	GDGCHC	4 cut(s)	94, 248, 454, 720
MluCI	AATT	8 cut(s)	25, 67, 114, 129, 185, 585, 871, 884
MlyI	GAGTC	4 cut(s)	50, 209, 392, 724
MmeI	TCCRAC	1 cut(s)	302
MnlI	CCTC	2 cut(s)	55, 693
Mph1103I	ATGCAT	1 cut(s)	805
MseI	TTAA	2 cut(s)	458, 606
MspA1I	CMGCKG	1 cut(s)	786
MspI	CCGG	1 cut(s)	616
MspR9I	CCNGG	1 cut(s)	795
MunI	CAATTG	1 cut(s)	129
Mva1269I	GAATGC	2 cut(s)	238, 365
MvaI	CCWGG	1 cut(s)	795
NdeII	GATC	4 cut(s)	146, 200, 310, 484
NlaIII	CATG	2 cut(s)	394, 807
NlaIV	GGNNCC	1 cut(s)	453
NsiI	ATGCAT	1 cut(s)	805
NspI	RCATGY	1 cut(s)	394
PciSI	GCTCTTC	1 cut(s)	857
PctI	GAATGC	2 cut(s)	238, 365
PfeI	GAWTC	5 cut(s)	134, 221, 230, 527, 898
PleI	GAGTC	4 cut(s)	50, 209, 392, 724
PpsI	GAGTC	4 cut(s)	50, 209, 392, 724
Ppu21I	YACGTR	1 cut(s)	350
PshBI	ATTAAT	1 cut(s)	458
Psp6I	CCWGG	1 cut(s)	793
PspGI	CCWGG	1 cut(s)	793
PspN4I	GGNNCC	1 cut(s)	453
PspPI	GGNCC	2 cut(s)	372, 680
PsuI	RGATCY	2 cut(s)	146, 310
PvuII	CAGCTG	1 cut(s)	786
SapI	GCTCTTC	1 cut(s)	857
SaqAI	TTAA	2 cut(s)	458, 606
Sau3AI	GATC	4 cut(s)	146, 200, 310, 484
Sau96I	GGNCC	2 cut(s)	372, 680
SchI	GAGTC	4 cut(s)	50, 209, 392, 724
ScrFI	CCNGG	1 cut(s)	795
SduI	GDGCHC	4 cut(s)	94, 248, 454, 720
SetI	ASST	8 cut(s)	83, 352, 546, 575, 580, 766, 788, 830
SfaNI	GCATC	1 cut(s)	279
SinI	GGWCC	1 cut(s)	680
SmlI	CTYRAG	2 cut(s)	195, 414
SmoI	CTYRAG	2 cut(s)	195, 414
SnaBI	TACGTA	1 cut(s)	350
Sse9I	AATT	8 cut(s)	25, 67, 114, 129, 185, 585, 871, 884
SsiI	CCGC	1 cut(s)	649
SspMI	CTAG	2 cut(s)	507, 662
StyD4I	CCNGG	1 cut(s)	793
TaaI	ACNGT	4 cut(s)	604, 637, 811, 821
TaiI	ACGT	2 cut(s)	352, 580
TaqI	TCGA	1 cut(s)	209
TasI	AATT	8 cut(s)	25, 67, 114, 129, 185, 585, 871, 884
TfiI	GAWTC	5 cut(s)	134, 221, 230, 527, 898
Tru1I	TTAA	2 cut(s)	458, 606
Tru9I	TTAA	2 cut(s)	458, 606
TscAI	CASTG	2 cut(s)	172, 777
TspDTI	ATGAA	3 cut(s)	90, 222, 555
TspRI	CASTG	2 cut(s)	172, 777
VneI	GTGCAC	2 cut(s)	90, 716
VpaK11BI	GGWCC	1 cut(s)	680
VspI	ATTAAT	1 cut(s)	458
XapI	RAATTY	5 cut(s)	25, 67, 114, 185, 871
XceI	RCATGY	1 cut(s)	394
XcmI	CCANNNNNNNNNTGG	1 cut(s)	366
XspI	CTAG	2 cut(s)	507, 662
Zsp2I	ATGCAT	1 cut(s)	805

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.