MD15G1115200.v1.1

vesicle docking

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0009462
Physical Location & Seq
Forward (+)
8122076 .. 8127410
5335 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1115200.v1.1.491

Sequence Viewer

Length: 2817 bp
ATGAAAAATCCTAATTTAGCAGAAATTCAACTTAATCTTCAGAAACGAAGAGGTCATGGGCTGCTATCTATACTTCGGCCGAAATTCAGTGGAGTGCTAGGTGAAGCCCTTGATGTCGCTGCTAGATGGAGTGGAGATGTTATCACTATTGAGAAAACAGTCCTGGAGCAAAGCAATAGCCGTTATGAGCTTCAGGGTGAATATGTGTTGCCGGGCTCGCGAGACTGCAACCCTGCTGGAAAGGAAAAGGGTGGCTTCTTGGAAAGGGCAATGGCTGGGCATCTGGGAAGTGCCATATCTTCTGTGGGGAGGTGGAGAATGAGAATGGAAGTTCCTAGAGCTGAGGTTGCTGAGATGCTTCCCCTAGCGAGACTCATTTCTCGAAGTACAGATCCTGCTGTTCATTCTAGGTCAAAGGATCTCTTTATTCAGAGTTTGCAGTCAGTGGGATTATATACTGAAAGTCTTAAAGAGCTACTGGAGGTTATACAGGGACATTATGCTTCATCAAATGAAGTTATTGTAGAAGACTTAAATCTTCCAGGTTTAACTGAGCTTAGAGGTAGCTGGCATGGCTGTCTTGATGCAAGTGGTGGTGGCAATGGGGATACCATGGCAGAATTTGATTTTCATGGCGAGGATTGGGAGTGGGGTACATACAAAACTCAGCGAGTTCTGGCAGTTGGTGCATACAGCAATGATGATGGTTTGCGCCTGGAAAAGATGTTTATTCAGAAGGATAATGCTACAATACATGCAGATGGGACTTTGTTAGGGCCCAAAACGAATCTTCACTTTGCTGTTCTAAATTTTCCTGTTAGTCTAGTTCCTCCAGTGATTCAGGTGATTGAATCTTCTGCTACTGATGTGGTTCAATCTTTACGGAAATTTTTAGCACCAATTAGAGGTATATTGCACATGGAAGGTGATCTCAGAGGGAATCTTGCAAAACCAGAATGCGATGTGCAAGTAAGGCTCCTGGATGGTGCCATTGGGGGCATTGATCTTGAACGAGCTGAAGTTGTTGCTTCTCTAACCTCAACCAGTCGTTTTCTGTTCAATGCAAAATTTGAACCAATCATCCGAATTGGGCATGTTCACATTCAAGGAAGTGTTCCTGTTAATTTTGTTCAGAATAACATGTCAGAGGAAGAAGATTCAGAAAAAGATAAAGGTCGAGCAAGTTTGGAAGGTCGGGTGAAGGAAAGAGGTAGGGGATCTGTACATGATGTCAGTGAAAAGAAACTTTCAAGAGAGCGAAATGAAGAAGGTTGGAATACTCGATTAGCAGAAGGCCTCAAAGGTTTAAACTGGAACCTACTAGATGTAGGGGAAGTCAGAATAGATGTTGATATTGAAGATGGGGGCATGATGCTGTTAACTGCCCTATCTCCTTATGCTAAATGGCTTCAGGGTGATGCTGCCGTGATGCTTCAGGTAAGAGGCACAGTTGAACAACCAGTACTGGATGGATATGCATCATTCCACAGGGCATCAATTTCCTCACCAGTTCTCTGGAAACCACTGTCAAACTTCAGTGGCATAGTTCATGTGAAATCGAATAGGTTATGCATCACTTCATTGGAGGGTAGGGTAAGCAGAAGGGGAAAACTGTTTGTAAAAGGAAACCTGCCCCTTAGAACCAGTGAAGCATACCTTGGAGATAAAATCGACTTGAAATGTGAAGTTCTGGAAGTACGGGCAAAGTATATTCGTAGTGCCCAGGTTGACACTCAGATGCAGATAACTGGTTCTATATTGCAACCAAACATCTCTGGAAATATTAAATTGAGCCATGGTGAAGCATATCTACCACATGATAAGGGTAGTGAGGCGGCTTCTAATAGATTGGCATCAAATGAGTCTAGGCTTATGGCTACTGGTGTTGATCGGGCAGTTGCCTCAAGGTATGTATCACGGTTTTTCAGTTCACAACCTGCTGCTTCGAGGACAAAATTCTCTCAACCCTCAGTTGAACCAGGTGAAAAGGAGACGGAGCAAGTGAACATTAAACCGAACGTAGATATTCAGCTTACTGATTTAAAGCTTGCTCTAGGACCAGAGTTGAGAGTAGTTTATCCTCCAATTCTCAATTTCGCAGTTAGTGGAGAGCTTGATTTAAATGGCCCAGCTCATCCCAAATTGATACAACCTAGAGGCGTCTTAACTTTTGAGAATGGTGATGTAAATCTTTTGGCAACTCAGGTGAGGCTCAAAAAAGAGCATCTAAATATTGCGAAATTTGAGCCCGGAATTGGACTAGATCCTATGCTAGATTTAGTTCTGGTAGGTTCTGAGTGGCAATTCAGGATTCAAAGTCGAGCCAGCAACTGGCAGGACAAATTGGTGGTGACCTCAACTAGCTCTGTGGAACAGGATGCCCTCTCTCCTACTGAGGCTGCTAGAGTCTTCGAAAGTCAATTGGCGGCGTCCATCTTGGAAAACAATGGGCAGCTCGCATTCCAAAAGCTTGCAACTACAACACTGGAAAAACTAATGCCGAGAATAGAAGGGCAAGGAGAGTTTGGGCAGGCAAGGTGGACGCTAGTGTATGCACCGCAGATCCCTAGTTTGCTCTCTGTTGATCCTACGGTGGATCCTCTCAAATCCATAGCCAGCAATATTTCATTTTGTACAGAAGTTGAAGTCCAATTCGGGAAACGTCTTCAGGCCTCGATTGTTAGGCAAATGAAGGACTCAGAGATGGCAACGCAATGGACCTTGACCTACCATCTTACGAGCCGCCTGCGGGTTCTCCTGCAGTCTGCTCCGTCAAATCGCCTCCTTTTCGAATATTCTGCCACGTCTCAGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000139 GO:0000149 GO:0000278 GO:0000280 GO:0000281 GO:0000902 GO:0000910 GO:0001505 GO:0002164 GO:0002376 GO:0002520 GO:0002790 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005793 GO:0005794 GO:0005798 GO:0005801 GO:0005886 GO:0006810 GO:0006836 GO:0006873 GO:0006875 GO:0006878 GO:0006886 GO:0006887 GO:0006888 GO:0006891 GO:0006900 GO:0006901 GO:0006903 GO:0006904 GO:0006906 GO:0006996 GO:0007030 GO:0007049 GO:0007112 GO:0007140 GO:0007154 GO:0007267 GO:0007268 GO:0007269 GO:0007275 GO:0007276 GO:0007283 GO:0007346 GO:0008104 GO:0008150 GO:0008283 GO:0008361 GO:0009306 GO:0009653 GO:0009791 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010256 GO:0010604 GO:0012505 GO:0012506 GO:0012507 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016079 GO:0016081 GO:0016192 GO:0016197 GO:0016482 GO:0017156 GO:0019222 GO:0019725 GO:0019953 GO:0022402 GO:0022406 GO:0022411 GO:0022412 GO:0022414 GO:0022607 GO:0023052 GO:0023061 GO:0030003 GO:0030097 GO:0030133 GO:0030134 GO:0030135 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0031090 GO:0031201 GO:0031224 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032504 GO:0032535 GO:0032940 GO:0032989 GO:0032991 GO:0033036 GO:0033043 GO:0033116 GO:0033206 GO:0034498 GO:0034613 GO:0035166 GO:0035167 GO:0042147 GO:0042175 GO:0042176 GO:0042592 GO:0042802 GO:0042803 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045055 GO:0045184 GO:0045732 GO:0045786 GO:0045930 GO:0046903 GO:0046907 GO:0046916 GO:0046983 GO:0047485 GO:0048193 GO:0048194 GO:0048199 GO:0048207 GO:0048208 GO:0048232 GO:0048278 GO:0048280 GO:0048284 GO:0048285 GO:0048308 GO:0048313 GO:0048489 GO:0048513 GO:0048518 GO:0048519 GO:0048523 GO:0048534 GO:0048542 GO:0048569 GO:0048609 GO:0048731 GO:0048732 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0051128 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051301 GO:0051321 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0051704 GO:0051726 GO:0055065 GO:0055070 GO:0055076 GO:0055080 GO:0055082 GO:0060255 GO:0060305 GO:0061024 GO:0061025 GO:0061640 GO:0065003 GO:0065007 GO:0065008 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0080090 GO:0090066 GO:0090114 GO:0090166 GO:0090174 GO:0097479 GO:0097480 GO:0097708 GO:0098588 GO:0098771 GO:0098791 GO:0098796 GO:0098805 GO:0098827 GO:0098916 GO:0099003 GO:0099504 GO:0099536 GO:0099537 GO:0099643 GO:0140013 GO:0140029 GO:0140056 GO:1903008 GO:1903046 GO:1903047 GO:1903358
KEGG Pathways
Metabolic & Signaling
ko04130 map04130
Pfam Domains
Protein Families
SNARE Syntaxin-5_N

Protein Analysis

939

Amino Acids

103.47

Weight (kDa)

6.17

Isoelectric Point (pI)

42.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TamB PF04357 528 - 922 1e-20 TamB C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 1638, 1945
AccB1I GGYRCC 1 cut(s) 986
AccB7I CCANNNNNTGG 1 cut(s) 2331
AccII CGCG 1 cut(s) 220
AciI CCGC 5 cut(s) 1835, 2426, 2558, 2743, 2749
AclWI GGATC 8 cut(s) 386, 426, 1225, 2258, 2557, 2579, 2591, 2604
AcoI YGGCCR 1 cut(s) 77
AcsI RAATTY 8 cut(s) 24, 83, 620, 808, 887, 1067, 1955, 2240
AcuI CTGAAG 7 cut(s) 23, 176, 1038, 1394, 1418, 1519, 2651
AcyI GRCGYC 2 cut(s) 2160, 2429
AfaI GTAC 6 cut(s) 388, 655, 1224, 1464, 1698, 2635
AfiI CCNNNNNNNGG 4 cut(s) 905, 2255, 2331, 2749
AflIII ACRYGT 1 cut(s) 1140
AjiI CACGTC 1 cut(s) 2805
AjnI CCWGG 6 cut(s) 162, 541, 714, 978, 1722, 1978
AjuI GAANNNNNNNTTGG 2 cut(s) 1641, 1673
AloI GAACNNNNNNTCC 2 cut(s) 1065, 1097
Alw26I GTCTC 4 cut(s) 216, 364, 1985, 2811
AlwI GGATC 8 cut(s) 386, 426, 1225, 2258, 2557, 2579, 2591, 2604
AlwNI CAGNNNCTG 2 cut(s) 395, 2331
AoxI GGCC 5 cut(s) 77, 776, 1294, 2125, 2670
ApaI GGGCCC 1 cut(s) 780
ApeKI GCWGC 6 cut(s) 61, 119, 1421, 1940, 2399, 2452
ApoI RAATTY 8 cut(s) 24, 83, 620, 808, 887, 1067, 1955, 2240
AspLEI GCGC 1 cut(s) 714
AspS9I GGNCC 5 cut(s) 776, 777, 2057, 2126, 2718
AsuC2I CCSGG 2 cut(s) 213, 2250
AsuII TTCGAA 2 cut(s) 2412, 2790
AvaII GGWCC 2 cut(s) 2057, 2718
BaeGI GKGCMC 2 cut(s) 780, 1723
BamHI GGATCC 1 cut(s) 2596
BanI GGYRCC 1 cut(s) 986
BanII GRGCYC 3 cut(s) 218, 780, 2250
BarI GAAGNNNNNNTAC 2 cut(s) 1794, 1826
BbsI GAAGAC 3 cut(s) 534, 2401, 2657
BbvCI CCTCAGC 1 cut(s) 342
BbvI GCAGC 6 cut(s) 48, 106, 1408, 1927, 2386, 2464
BccI CCATC 9 cut(s) 120, 698, 755, 977, 1355, 1463, 2441, 2698, 2739
BceAI ACGGC 2 cut(s) 165, 1409
BcgI CGANNNNNNTGC 4 cut(s) 2728, 2762, 2780, 2814
BciT130I CCWGG 6 cut(s) 164, 543, 716, 980, 1724, 1980
BciVI GTATCC 1 cut(s) 601
BcnI CCSGG 2 cut(s) 213, 2250
BcoDI GTCTC 4 cut(s) 216, 364, 1985, 2811
BfmI CTRYAG 1 cut(s) 2759
BfuAI ACCTGC 2 cut(s) 1638, 1945
BfuI GTATCC 1 cut(s) 601
BisI GCNGC 9 cut(s) 62, 120, 1422, 1836, 1941, 2400, 2427, 2453, 2743
BlsI GCNGC 9 cut(s) 63, 121, 1423, 1837, 1942, 2401, 2428, 2454, 2744
BmcAI AGTACT 1 cut(s) 1464
Bme1390I CCNGG 8 cut(s) 164, 213, 543, 716, 980, 1724, 1980, 2250
Bme18I GGWCC 2 cut(s) 2057, 2718
BmgBI CACGTC 1 cut(s) 2805
BmgT120I GGNCC 5 cut(s) 776, 777, 2057, 2126, 2718
BmiI GGNNCC 5 cut(s) 778, 977, 988, 1316, 2598
BmrFI CCNGG 8 cut(s) 164, 213, 543, 716, 980, 1724, 1980, 2250
BpiI GAAGAC 3 cut(s) 534, 2401, 2657
BpmI CTGGAG 3 cut(s) 185, 500, 816
Bpu10I CCTNAGC 1 cut(s) 342
Bpu14I TTCGAA 2 cut(s) 2412, 2790
BpuEI CTTGAG 1 cut(s) 1888
BpuMI CCSGG 2 cut(s) 213, 2250
BsaBI GATNNNNATC 3 cut(s) 1477, 1852, 2187
BsaHI GRCGYC 2 cut(s) 2160, 2429
BsaJI CCNNGG 4 cut(s) 612, 1657, 1722, 1795
Bsc4I CCNNNNNNNGG 4 cut(s) 905, 2255, 2331, 2749
Bse3DI GCAATG 4 cut(s) 276, 607, 703, 2720
Bse8I GATNNNNATC 3 cut(s) 1477, 1852, 2187
BseBI CCWGG 6 cut(s) 164, 543, 716, 980, 1724, 1980
BseDI CCNNGG 4 cut(s) 612, 1657, 1722, 1795
BseGI GGATG 5 cut(s) 988, 1080, 1474, 2134, 2383
BseJI GATNNNNATC 3 cut(s) 1477, 1852, 2187
BseLI CCNNNNNNNGG 4 cut(s) 905, 2255, 2331, 2749
BseMI GCAATG 4 cut(s) 276, 607, 703, 2720
BseSI GKGCMC 2 cut(s) 780, 1723
BseX3I CGGCCG 1 cut(s) 77
BseXI GCAGC 6 cut(s) 48, 106, 1408, 1927, 2386, 2464
BseYI CCCAGC 2 cut(s) 275, 2128
Bsh1236I CGCG 1 cut(s) 220
Bsh1285I CGRYCG 1 cut(s) 80
BshFI GGCC 5 cut(s) 79, 778, 1296, 2127, 2672
BshNI GGYRCC 1 cut(s) 986
BsiEI CGRYCG 1 cut(s) 80
BsiSI CCGG 2 cut(s) 212, 2250
BslFI GGGAC 2 cut(s) 507, 778
BslI CCNNNNNNNGG 4 cut(s) 905, 2255, 2331, 2749
BsmAI GTCTC 4 cut(s) 216, 364, 1985, 2811
BsmBI CGTCTC 2 cut(s) 1985, 2811
BsmFI GGGAC 2 cut(s) 507, 778
BsmI GAATGC 2 cut(s) 962, 2459
BsnI GGCC 5 cut(s) 79, 778, 1296, 2127, 2672
Bsp119I TTCGAA 2 cut(s) 2412, 2790
Bsp120I GGGCCC 1 cut(s) 776
Bsp1286I GDGCHC 4 cut(s) 218, 780, 1723, 2250
Bsp1407I TGTACA 2 cut(s) 1222, 2633
Bsp19I CCATGG 2 cut(s) 612, 1795
Bsp68I TCGCGA 1 cut(s) 220
BspACI CCGC 5 cut(s) 1835, 2426, 2558, 2743, 2749
BspANI GGCC 5 cut(s) 79, 778, 1296, 2127, 2672
BspFNI CGCG 1 cut(s) 220
BspLI GGNNCC 5 cut(s) 778, 977, 988, 1316, 2598
BspMAI CTGCAG 1 cut(s) 2763
BspMI ACCTGC 2 cut(s) 1638, 1945
BspPI GGATC 8 cut(s) 386, 426, 1225, 2258, 2557, 2579, 2591, 2604
BspT104I TTCGAA 2 cut(s) 2412, 2790
BspT107I GGYRCC 1 cut(s) 986
BsrDI GCAATG 4 cut(s) 276, 607, 703, 2720
BsrGI TGTACA 2 cut(s) 1222, 2633
BssECI CCNNGG 4 cut(s) 612, 1657, 1722, 1795
BssNI GRCGYC 2 cut(s) 2160, 2429
BssT1I CCWWGG 3 cut(s) 612, 1657, 1795
Bst2UI CCWGG 6 cut(s) 164, 543, 716, 980, 1724, 1980
Bst4CI ACNGT 6 cut(s) 160, 1450, 1527, 1614, 1920, 2593
Bst6I CTCTTC 1 cut(s) 43
BstACI GRCGYC 2 cut(s) 2160, 2429
BstAPI GCANNNNNTGC 1 cut(s) 686
BstAUI TGTACA 2 cut(s) 1222, 2633
BstBI TTCGAA 2 cut(s) 2412, 2790
BstC8I GCNNGC 9 cut(s) 218, 569, 2049, 2326, 2457, 2472, 2532, 2617, 2747
BstDSI CCRYGG 2 cut(s) 612, 1795
BstEII GGTNACC 1 cut(s) 2350
BstF5I GGATG 5 cut(s) 988, 1080, 1474, 2134, 2383
BstFNI CGCG 1 cut(s) 220
BstHHI GCGC 1 cut(s) 714
BstMAI GTCTC 4 cut(s) 216, 364, 1985, 2811
BstMCI CGRYCG 1 cut(s) 80
BstMWI GCNNNNNNNGC 5 cut(s) 217, 347, 573, 686, 973
BstNI CCWGG 6 cut(s) 164, 543, 716, 980, 1724, 1980
BstNSI RCATGY 3 cut(s) 758, 1097, 1144
BstPI GGTNACC 1 cut(s) 2350
BstSCI CCNGG 8 cut(s) 162, 211, 541, 714, 978, 1722, 1978, 2248
BstSFI CTRYAG 1 cut(s) 2759
BstSLI GKGCMC 2 cut(s) 780, 1723
BstUI CGCG 1 cut(s) 220
BstV1I GCAGC 6 cut(s) 48, 106, 1408, 1927, 2386, 2464
BstV2I GAAGAC 3 cut(s) 534, 2401, 2657
BstX2I RGATCY 6 cut(s) 391, 418, 1217, 2263, 2562, 2596
BstXI CCANNNNNNTGG 1 cut(s) 1515
BstYI RGATCY 6 cut(s) 391, 418, 1217, 2263, 2562, 2596
BstZI CGGCCG 1 cut(s) 77
BsuI GTATCC 1 cut(s) 601
BsuRI GGCC 5 cut(s) 79, 778, 1296, 2127, 2672
BtgI CCRYGG 2 cut(s) 612, 1795
BtgZI GCGATG 1 cut(s) 975
BtrI CACGTC 1 cut(s) 2805
BtsCI GGATG 5 cut(s) 988, 1080, 1474, 2134, 2383
BtsIMutI CAGTG 8 cut(s) 94, 450, 840, 1240, 1523, 1543, 1651, 2483
BtuMI TCGCGA 1 cut(s) 220
BveI ACCTGC 2 cut(s) 1638, 1945
Cac8I GCNNGC 9 cut(s) 218, 569, 2049, 2326, 2457, 2472, 2532, 2617, 2747
CaiI CAGNNNCTG 2 cut(s) 395, 2331
CfoI GCGC 1 cut(s) 714
Cfr13I GGNCC 5 cut(s) 776, 777, 2057, 2126, 2718
CseI GACGC 3 cut(s) 2149, 2418, 2551
CsiI ACCWGGT 1 cut(s) 1978
Csp6I GTAC 6 cut(s) 387, 654, 1223, 1463, 1697, 2634
CviQI GTAC 6 cut(s) 387, 654, 1223, 1463, 1697, 2634
DraI TTTAAA 3 cut(s) 1308, 2043, 2121
EaeI YGGCCR 1 cut(s) 77
EagI CGGCCG 1 cut(s) 77
Eam1104I CTCTTC 1 cut(s) 43
EarI CTCTTC 1 cut(s) 43
EclXI CGGCCG 1 cut(s) 77
Eco130I CCWWGG 3 cut(s) 612, 1657, 1795
Eco147I AGGCCT 2 cut(s) 1296, 2672
Eco24I GRGCYC 3 cut(s) 218, 780, 2250
Eco47I GGWCC 2 cut(s) 2057, 2718
Eco52I CGGCCG 1 cut(s) 77
Eco57I CTGAAG 7 cut(s) 23, 176, 1038, 1394, 1418, 1519, 2651
Eco91I GGTNACC 1 cut(s) 2350
EcoO109I RGGNCCY 1 cut(s) 776
EcoO65I GGTNACC 1 cut(s) 2350
EcoRII CCWGG 6 cut(s) 162, 541, 714, 978, 1722, 1978
EcoT14I CCWWGG 3 cut(s) 612, 1657, 1795
EcoT22I ATGCAT 2 cut(s) 1480, 1574
EcoT38I GRGCYC 3 cut(s) 218, 780, 2250
ErhI CCWWGG 3 cut(s) 612, 1657, 1795
Esp3I CGTCTC 2 cut(s) 1985, 2811
FalI AAGNNNNNCTT 6 cut(s) 239, 271, 407, 439, 1641, 1673
FaqI GGGAC 2 cut(s) 507, 778
FauI CCCGC 1 cut(s) 2742
Fnu4HI GCNGC 9 cut(s) 62, 120, 1422, 1836, 1941, 2400, 2427, 2453, 2743
FokI GGATG 5 cut(s) 995, 1067, 1481, 2121, 2390
FriOI GRGCYC 3 cut(s) 218, 780, 2250
Fsp4HI GCNGC 9 cut(s) 62, 120, 1422, 1836, 1941, 2400, 2427, 2453, 2743
GlaI GCGC 1 cut(s) 713
GluI GCNGC 9 cut(s) 62, 120, 1422, 1836, 1941, 2400, 2427, 2453, 2743
GsaI CCCAGC 2 cut(s) 279, 2132
GsuI CTGGAG 3 cut(s) 185, 500, 816
HaeIII GGCC 5 cut(s) 79, 778, 1296, 2127, 2672
HapII CCGG 2 cut(s) 212, 2250
HgaI GACGC 3 cut(s) 2149, 2418, 2551
HhaI GCGC 1 cut(s) 714
Hin1I GRCGYC 2 cut(s) 2160, 2429
Hin6I GCGC 1 cut(s) 712
HinP1I GCGC 1 cut(s) 712
HincII GTYRAC 2 cut(s) 1380, 1729
HindII GTYRAC 2 cut(s) 1380, 1729
HindIII AAGCTT 2 cut(s) 2045, 2468
HpaI GTTAAC 1 cut(s) 1380
HpaII CCGG 2 cut(s) 212, 2250
Hpy166II GTNNAC 6 cut(s) 1099, 1380, 1729, 1931, 2005, 2541
Hpy8I GTNNAC 6 cut(s) 1099, 1380, 1729, 1931, 2005, 2541
HpyAV CCTTC 9 cut(s) 730, 917, 1184, 1195, 1262, 1286, 1596, 2504, 2686
HpyCH4III ACNGT 6 cut(s) 160, 1450, 1527, 1614, 1920, 2593
HpyCH4IV ACGT 3 cut(s) 2019, 2662, 2804
HpyF10VI GCNNNNNNNGC 5 cut(s) 217, 347, 573, 686, 973
HpySE526I ACGT 3 cut(s) 2019, 2662, 2804
Hsp92I GRCGYC 2 cut(s) 2160, 2429
HspAI GCGC 1 cut(s) 712
KspAI GTTAAC 1 cut(s) 1380
LmnI GCTCC 4 cut(s) 166, 981, 1996, 2773
Lsp1109I GCAGC 6 cut(s) 48, 106, 1408, 1927, 2386, 2464
MabI ACCWGGT 1 cut(s) 1978
MaeII ACGT 3 cut(s) 2019, 2662, 2804
MaeIII GTNAC 1 cut(s) 2350
MfeI CAATTG 1 cut(s) 2420
MflI RGATCY 6 cut(s) 391, 418, 1217, 2263, 2562, 2596
MhlI GDGCHC 4 cut(s) 218, 780, 1723, 2250
MlyI GAGTC 4 cut(s) 366, 1871, 2415, 2690
MmeI TCCRAC 1 cut(s) 1253
Mph1103I ATGCAT 2 cut(s) 1480, 1574
MslI CAYNNNNRTG 2 cut(s) 759, 1736
MspI CCGG 2 cut(s) 212, 2250
MspR9I CCNGG 8 cut(s) 164, 213, 543, 716, 980, 1724, 1980, 2250
MssI GTTTAAAC 1 cut(s) 1308
MunI CAATTG 1 cut(s) 2420
Mva1269I GAATGC 2 cut(s) 962, 2459
MvaI CCWGG 6 cut(s) 164, 543, 716, 980, 1724, 1980
MvnI CGCG 1 cut(s) 220
MwoI GCNNNNNNNGC 5 cut(s) 217, 347, 573, 686, 973
NciI CCSGG 2 cut(s) 213, 2250
NcoI CCATGG 2 cut(s) 612, 1795
NlaIV GGNNCC 5 cut(s) 778, 977, 988, 1316, 2598
NmeAIII GCCGAG 1 cut(s) 2526
NmuCI GTSAC 1 cut(s) 2350
NruI TCGCGA 1 cut(s) 220
NsiI ATGCAT 2 cut(s) 1480, 1574
NspI RCATGY 3 cut(s) 758, 1097, 1144
NspV TTCGAA 2 cut(s) 2412, 2790
PceI AGGCCT 2 cut(s) 1296, 2672
PciI ACATGT 1 cut(s) 1140
PctI GAATGC 2 cut(s) 962, 2459
PfeI GAWTC 6 cut(s) 787, 838, 851, 940, 1157, 2311
PflMI CCANNNNNTGG 1 cut(s) 2331
PfoI TCCNGGA 2 cut(s) 162, 978
PkrI GCNGC 9 cut(s) 63, 121, 1423, 1837, 1942, 2401, 2428, 2454, 2744
PleI GAGTC 4 cut(s) 366, 1870, 2414, 2690
PmeI GTTTAAAC 1 cut(s) 1308
PpsI GAGTC 4 cut(s) 366, 1870, 2414, 2690
PscI ACATGT 1 cut(s) 1140
Psp6I CCWGG 6 cut(s) 162, 541, 714, 978, 1722, 1978
PspEI GGTNACC 1 cut(s) 2350
PspFI CCCAGC 2 cut(s) 275, 2128
PspGI CCWGG 6 cut(s) 162, 541, 714, 978, 1722, 1978
PspN4I GGNNCC 5 cut(s) 778, 977, 988, 1316, 2598
PspOMI GGGCCC 1 cut(s) 776
PspPI GGNCC 5 cut(s) 776, 777, 2057, 2126, 2718
PsrI GAACNNNNNNTAC 2 cut(s) 1446, 1478
PstI CTGCAG 1 cut(s) 2763
PstNI CAGNNNCTG 2 cut(s) 395, 2331
PsuI RGATCY 6 cut(s) 391, 418, 1217, 2263, 2562, 2596
RruI TCGCGA 1 cut(s) 220
RsaI GTAC 6 cut(s) 388, 655, 1224, 1464, 1698, 2635
RsaNI GTAC 6 cut(s) 387, 654, 1223, 1463, 1697, 2634
RseI CAYNNNNRTG 2 cut(s) 759, 1736
SatI GCNGC 9 cut(s) 62, 120, 1422, 1836, 1941, 2400, 2427, 2453, 2743
Sau96I GGNCC 5 cut(s) 776, 777, 2057, 2126, 2718
ScaI AGTACT 1 cut(s) 1464
SchI GAGTC 4 cut(s) 366, 1871, 2415, 2690
ScrFI CCNGG 8 cut(s) 164, 213, 543, 716, 980, 1724, 1980, 2250
SduI GDGCHC 4 cut(s) 218, 780, 1723, 2250
SexAI ACCWGGT 1 cut(s) 1978
SfcI CTRYAG 1 cut(s) 2759
SfuI TTCGAA 2 cut(s) 2412, 2790
SinI GGWCC 2 cut(s) 2057, 2718
SmiI ATTTAAAT 1 cut(s) 2121
SmiMI CAYNNNNRTG 2 cut(s) 759, 1736
SmlI CTYRAG 1 cut(s) 1903
SmoI CTYRAG 1 cut(s) 1903
SseBI AGGCCT 2 cut(s) 1296, 2672
SsiI CCGC 5 cut(s) 1835, 2426, 2558, 2743, 2749
SspI AATATT 4 cut(s) 1783, 2233, 2623, 2795
StuI AGGCCT 2 cut(s) 1296, 2672
StyD4I CCNGG 8 cut(s) 162, 211, 541, 714, 978, 1722, 1978, 2248
StyI CCWWGG 3 cut(s) 612, 1657, 1795
SwaI ATTTAAAT 1 cut(s) 2121
TaaI ACNGT 6 cut(s) 160, 1450, 1527, 1614, 1920, 2593
TaiI ACGT 3 cut(s) 2022, 2665, 2807
TatI WGTACW 4 cut(s) 386, 1222, 1462, 2633
TauI GCSGC 3 cut(s) 1838, 2429, 2745
TfiI GAWTC 6 cut(s) 787, 838, 851, 940, 1157, 2311
TscAI CASTG 8 cut(s) 94, 450, 840, 1240, 1530, 1543, 1651, 2490
TseFI GTSAC 1 cut(s) 2350
TseI GCWGC 6 cut(s) 61, 119, 1421, 1940, 2399, 2452
Tsp45I GTSAC 1 cut(s) 2350
TspGWI ACGGA 3 cut(s) 898, 2009, 2760
TspRI CASTG 8 cut(s) 94, 450, 840, 1240, 1530, 1543, 1651, 2490
Van91I CCANNNNNTGG 1 cut(s) 2331
VpaK11BI GGWCC 2 cut(s) 2057, 2718
XapI RAATTY 8 cut(s) 24, 83, 620, 808, 887, 1067, 1955, 2240
XceI RCATGY 3 cut(s) 758, 1097, 1144
XcmI CCANNNNNNNNNTGG 1 cut(s) 301
ZrmI AGTACT 1 cut(s) 1464
Zsp2I ATGCAT 2 cut(s) 1480, 1574
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.