Rorug06G0398900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0009462
Physical Location & Seq
Reverse (-)
54396521 .. 54399841
3321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0398900.1

Sequence Viewer

Length: 3321 bp
ATGTGCTGCTGTAGTACTACTTATACTGACACCACCACTAGTAGTAGGATATTTGCTATAAGCACCCACACTCCTCCTTCTGTTCTACATCCACCAAAATTAAAGGCTTGGCCTTGTGGTTCGCTGCTCAACTTGACCAGCAAGAGGAGCAAAAGGTTGGGTTTCTGTGGCTTTGTGATCAAAAGGCCGCAGCAGGAGGTGGTGGTGGTGGTGAAGAAGAAAAAGCCCAAAACTTCAGTGTCTTCTGAGGAGGTTGTGAGGGTTCTCAAGTCCATTTCAGACCCGACTTCTGCCTTTTCATTCTTTAAGTCCATTGCTGAGTTGCCTAGTGTGATTCACACCACTGAAACTTGCAATTACATGCTTCAACTCTTGGGTGTTCATAGGAGGGTGGATGATATGGCTTTTGTGTTTGATTTGATGCAAAAGCATATCATAAACAGGACTGTAGACACTTACCTCATTATATTTAAGGGTCTTAATATAAGAGGTGGGATTCGAGCAGCCCCGTATGCTCTTGGAAGGTTGCGGAAAAATGGGTTTATCTTGAACGCATATTCGTACAATGGCTTGATCTATATGCTTATCCAGTCTGGCTATTGTAGGGAGGCTCTGGAGGTATACCAAAGGGTGGTGTCAGAGGGACTTAAGCCGAGCCTCAAGACTTACTCAGCACTTATGGTGGCATTGGGAAAGAGAAGGGATGTTCAAACTGTTATGGGCTTACTAAAAGAGATGGAAACTTTGGGGCTCAGGCCTAATGTTTATACTTTCACTATATGCATTAGAGTACTCGGGAGAGCCGGGAAAATTGATGAGGCGTATGAAATTTTCAAGAGAATGGATGATGAGGGATGTGGCCCCGACGTTATCACTTATACTGTCCTCATTGATGCTCTTTGTAATGCAGGTAAACTTGATAATGCCAAGAAGTTGTTTGCAAATATGAAAGCAAGTGGTCATAAGCCTGACCAAGTAACCTACATTACGCTGCTGGACAAGTTTAGTGATAGTAAAGACTTGGACACTGTAAAAGAATTCTGGAGTGAAATGAAAGCTGATGGTTATGCTCCTGATGTGGTTACTTTCACTATACTGGTTGATTCTTTATGCAAAGCTGGAAATGTAGATGAGGCATTCAATATGTTGGATATCATGAGGAAAGAAGGGGTCTCACCAAATCTTCATACCTACAACACGTTAATTTGTGGACTTCTGCGGTTATGGAGGTTGGATGAGGCATTGGAACTCTTCAACAGTATGGATTCTCTTGGTGTTGCACCTACTGCTTACACATACATCCTTTTCATTGACTATTATGGAAAGTCTGGTGACTCGGGAAAAGCTATTGAGGCATTTGAGAGGATGAAAACTCGAGGCATTGTTCCTAATATTGTTGCTTGTAATGCCTCCTTGTATGGTCTTGCTGAGGAGGGTAGACTTCAAGATGCAAAACATATTTATGATGAGCTTATATACAGTGGGCTTTCTCCGGATTCAGTAACTTATAACATGATGATGAAGTGCTATAGTAAGGTGGGGCAAATAGATGAAGCCATCAAGTTACTCTCAGAGATGGAAAGAAATGGGTGTGAGGCTGATGTCATCATAGTTAATTCGTTGATTGACATGCTTTACAAGGCTGGCCGAGTAGATGAGGCATGGCAAATGTTTTACAGAATGAAGGAAATGAAGCTCACTCCAACAGTTGTGACCTACAATACATTACTGGCTGCATTAGGGAAAGAGGGTCAAGTCAGAAAAGCTATTGAAATGTTTGAGAATATGACTGAACAAGGGTGTCCTCCAAATGCAATAACTTTCAACACACTCCTGAATTGCCTTTGCAAGAATGATGAGGTCAATTTGGCCTTGAAAATGCTTTGCAAAATGACCGTGATGAATTGCTGTCCTGATGTTTTGACCTATAACACTATAATTTATGGCTTAATCAGAGAAAACAGAATTGATTATGCATTCTGGTTCTTCCATCAGATGAAGAAACGCCTATTTCCTGATCATATAACATTGTGCACCCTCCTTCCGGGTGTAGTAAAGGATGGGCGCATTGAGGATGCTCTCAAAGTTGCTGAGGACTTCGCATATCAGGTTGGGGTTCAAGCAGACAGGCCTTTTTGGGAAGATTTGATTGGAGGGGTTGTGATTCAAGCTGAAGTAGACCGAGCCATTTTATTTGCTGAAAGGTTGATTTCTGAGAGGATTTGCCTAGATGATTCTGTTCTGATACCTCTACTTCGATTTTTGTGTACACGTAGGAAAACTCTTGATGCTCAGAATTTGTTTGCAAAGTTTACTGGAACTCTTGGAGTTAAGCCAACACTAGAAGCATATAACTGTTTGATCGAATGGCTTCTTAAAGACCATTTCACTGAACAAGCTTGGGATCTATTCAAGGAGATGAAAATTGCTGGCTGTGCCCCTGATGTATTCACCTACAATTTGTTACTTGATGCTCATGGGAAGTCTGGGAACATCACTGAACTCTTTGAATTGTATGATGAGATGATTTGCAGGGGATACAAGCCTAACACCATAACGCACAATATAGTTATCTCCAGTCTTGTGAAATCTGATAGCCTAGACAGGGCTATAGATCTATATTATGATCTTGTAAGTGGTGATTTTTCTCCTTCTCCTTGTACATACGGCCCTCTCATAGATGGACTTTTCAAGTCGGGAAGACTAGAGGAAGCAATGCATTTCTTTGAGGAGATGGCAGAATATGGATGTAAGCCTAATTGTGCGATCTTCAATATTCTTATAAATGGTTTTTCGAAAACAGGTGATGTGGAAACTGCTTGCGAGTTGTTTAAAAGGATGATTAAAGAAGGAATAAGACCAGACCTAAAGTCGTACACCATTCTTGTGGATTGCTACTGCCAGGCTGGAAGAGTGGATGATGCTTTGCACTATTTTGAGGAGTTAAGACGAAGTGGCCTTGATCCTGATTCAGTTTCCTACAACCTTATGATTAATGGACTTGGAAGATCACGGAGGATGGAGGAAGCTCTCGCTCTTTATGATGAAATGCGGACTAGAAGAATTACTCCTGATATTTTCACCTACAATTCATTAATACTCAATCTTGGACTTGTTGGAATGGTGGAGCAAGCAGGAAGGATTTATAAAGAGCTACAACTTACTGGTCTTGAACCTGATGTGTTTACTTACAATGCTCTCATTCGGCTGCATAGCACTTCTGGAAATCCAGATGATGCTTATGCAGTCTACAAGAACATGATGGTTGGCGGCTGCAGTCCCAATGTAGGAACATATGCACAGCTTCCCAATCAAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TamB

Protein Analysis

1106

Amino Acids

124.75

Weight (kDa)

6.02

Isoelectric Point (pI)

34.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_24 PF23276 171 - 281 4.3e-06 Fungal tetratrico peptide repeats
PPR_3 PF13812 177 - 233 1.1e-06 Pentatricopeptide repeat domain
PPR_long PF17177 178 - 304 4.3e-10 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 222 - 265 6.7e-08 PPR repeat family
PPR_3 PF13812 242 - 300 3.1e-12 Pentatricopeptide repeat domain
PPR_1 PF12854 250 - 281 2.6e-07 PPR repeat
PPR PF01535 256 - 286 2.4e-06 PPR repeat
PPR_2 PF13041 262 - 302 3.5e-11 PPR repeat family
PPR_1 PF12854 285 - 317 1.5e-11 PPR repeat
PPR_2 PF13041 288 - 335 3.8e-15 PPR repeat family
PPR_3 PF13812 288 - 335 7.3e-07 Pentatricopeptide repeat domain
PPR PF01535 291 - 320 2.1e-06 PPR repeat
PPR_3 PF13812 311 - 367 3.2e-07 Pentatricopeptide repeat domain
PPR_2 PF13041 326 - 372 2.4e-10 PPR repeat family
PPR_long PF17177 340 - 440 1.9e-09 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 349 - 402 6e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 355 - 387 1.5e-13 PPR repeat
PPR_2 PF13041 358 - 406 8.9e-17 PPR repeat family
PPR PF01535 361 - 391 5.1e-07 PPR repeat
PPR_1 PF12854 390 - 421 1.9e-07 PPR repeat
PPR_2 PF13041 396 - 437 6.9e-11 PPR repeat family
PPR PF01535 397 - 426 1.9e-06 PPR repeat
PPR_3 PF13812 454 - 511 1.2e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 463 - 512 6.1e-10 PPR repeat family
PPR_1 PF12854 495 - 527 1.3e-09 PPR repeat
PPR_2 PF13041 498 - 535 7.8e-12 PPR repeat family
TPR_24 PF23276 500 - 595 8.5e-08 Fungal tetratrico peptide repeats
PPR PF01535 501 - 531 2.9e-09 PPR repeat
PPR_long PF17177 517 - 597 8.1e-06 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 521 - 582 3.2e-12 Pentatricopeptide repeat domain
PPR_1 PF12854 529 - 562 1.6e-06 PPR repeat
PPR_2 PF13041 534 - 580 3.8e-12 PPR repeat family
PPR_1 PF12854 566 - 597 1.3e-08 PPR repeat
PPR_2 PF13041 568 - 617 7.9e-19 PPR repeat family
PPR PF01535 571 - 601 1.7e-07 PPR repeat
PPR_3 PF13812 592 - 647 2.4e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 600 - 632 5.3e-10 PPR repeat
PPR_2 PF13041 603 - 651 4.1e-13 PPR repeat family
PPR_1 PF12854 634 - 667 2e-08 PPR repeat
PPR_2 PF13041 638 - 685 5.9e-09 PPR repeat family
PPR_2 PF13041 781 - 826 9.5e-14 PPR repeat family
PPR_3 PF13812 803 - 862 3.9e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 811 - 842 5.4e-06 PPR repeat
PPR_2 PF13041 814 - 863 9e-14 PPR repeat family
PPR_3 PF13812 876 - 931 2.5e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 882 - 912 1.5e-07 PPR repeat
PPR_2 PF13041 884 - 920 5.5e-08 PPR repeat family
PPR PF01535 888 - 917 5.4e-06 PPR repeat
PPR_long PF17177 903 - 993 6.3e-10 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 916 - 947 4.8e-09 PPR repeat
PPR_2 PF13041 922 - 968 6.6e-14 PPR repeat family
PPR PF01535 923 - 952 1e-07 PPR repeat
TPR_24 PF23276 933 - 1051 1.4e-08 Fungal tetratrico peptide repeats
PPR_3 PF13812 943 - 1002 5.3e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 951 - 981 1.7e-08 PPR repeat
PPR PF01535 958 - 987 5.7e-07 PPR repeat
PPR_2 PF13041 958 - 1002 6.2e-12 PPR repeat family
PPR_3 PF13812 979 - 1033 1.6e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 986 - 1018 2.1e-08 PPR repeat
PPR_2 PF13041 989 - 1033 2.7e-15 PPR repeat family
PPR PF01535 992 - 1021 3.3e-08 PPR repeat
PPR_long PF17177 997 - 1100 6.5e-07 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 1047 - 1100 1.5e-08 Pentatricopeptide repeat domain
PPR_2 PF13041 1059 - 1100 3.7e-10 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 1509, 2783, 3147
Acc36I ACCTGC 1 cut(s) 899
AccB7I CCANNNNNTGG 1 cut(s) 631
AccI GTMKAC 5 cut(s) 450, 621, 1438, 2178, 3249
AccIII TCCGGA 1 cut(s) 1492
AciI CCGC 5 cut(s) 188, 529, 1219, 3052, 3270
AclWI GGATC 2 cut(s) 2412, 2957
AcoI YGGCCR 1 cut(s) 1645
AcsI RAATTY 3 cut(s) 828, 1037, 2296
AcuI CTGAAG 2 cut(s) 219, 2193
AfaI GTAC 6 cut(s) 16, 563, 792, 2269, 2662, 2876
AfiI CCNNNNNNNGG 5 cut(s) 144, 631, 2044, 2605, 3287
AflII CTTAAG 1 cut(s) 647
AflIII ACRYGT 2 cut(s) 1197, 2270
AhdI GACNNNNNGTC 1 cut(s) 2869
AhlI ACTAGT 1 cut(s) 38
AjnI CCWGG 1 cut(s) 2901
AjuI GAANNNNNNNTTGG 2 cut(s) 2133, 2165
Alw21I GWGCWC 1 cut(s) 2036
Alw26I GTCTC 1 cut(s) 1177
Alw44I GTGCAC 1 cut(s) 2032
AlwI GGATC 2 cut(s) 2412, 2957
Ama87I CYCGRG 3 cut(s) 794, 1336, 1374
Aor13HI TCCGGA 1 cut(s) 1492
AoxI GGCC 9 cut(s) 110, 185, 755, 859, 1645, 1869, 2129, 2668, 2956
ApaLI GTGCAC 1 cut(s) 2032
ApeKI GCWGC 8 cut(s) 6, 124, 190, 503, 991, 1733, 3208, 3273
ApoI RAATTY 3 cut(s) 828, 1037, 2296
AseI ATTAAT 2 cut(s) 2994, 3095
Asp700I GAANNNNTTC 1 cut(s) 2370
AspLEI GCGC 1 cut(s) 2067
AspS9I GGNCC 2 cut(s) 860, 2669
AsuC2I CCSGG 2 cut(s) 805, 2046
AsuHPI GGTGA 7 cut(s) 223, 1167, 1343, 2443, 2651, 2816, 3073
AsuII TTCGAA 1 cut(s) 2795
AvaI CYCGRG 3 cut(s) 794, 1336, 1374
BaeGI GKGCMC 2 cut(s) 2036, 2440
BanII GRGCYC 1 cut(s) 753
BbsI GAAGAC 2 cut(s) 234, 2707
Bbv12I GWGCWC 1 cut(s) 2036
BbvCI CCTCAGC 2 cut(s) 1428, 2091
BbvI GCAGC 7 cut(s) 111, 202, 515, 978, 1720, 3195, 3260
BceAI ACGGC 1 cut(s) 2683
BciT130I CCWGG 1 cut(s) 2903
BciVI GTATCC 1 cut(s) 2531
BclI TGATCA 2 cut(s) 177, 2017
BcnI CCSGG 2 cut(s) 805, 2046
BcoDI GTCTC 1 cut(s) 1177
BcuI ACTAGT 1 cut(s) 38
BfaI CTAG 7 cut(s) 39, 327, 2228, 2342, 2600, 2705, 3057
BfmI CTRYAG 5 cut(s) 10, 447, 1528, 2610, 3274
BfrI CTTAAG 1 cut(s) 647
BfuAI ACCTGC 1 cut(s) 899
BfuI GTATCC 1 cut(s) 2531
BglII AGATCT 1 cut(s) 2614
BmcAI AGTACT 2 cut(s) 16, 792
Bme1390I CCNGG 3 cut(s) 805, 2046, 2903
BmeRI GACNNNNNGTC 1 cut(s) 2869
BmeT110I CYCGRG 3 cut(s) 794, 1336, 1374
BmgT120I GGNCC 2 cut(s) 860, 2669
BmiI GGNNCC 1 cut(s) 862
BmrFI CCNGG 3 cut(s) 805, 2046, 2903
BmsI GCATC 8 cut(s) 411, 883, 1438, 2065, 2278, 2461, 2911, 3226
BpiI GAAGAC 2 cut(s) 234, 2707
BpmI CTGGAG 3 cut(s) 635, 1063, 2560
Bpu10I CCTNAGC 3 cut(s) 752, 1428, 2091
Bpu14I TTCGAA 1 cut(s) 2795
BpuEI CTTGAG 2 cut(s) 251, 644
BpuMI CCSGG 2 cut(s) 805, 2046
BsaAI YACGTR 1 cut(s) 2273
BsaI GGTCTC 1 cut(s) 1177
BsaWI WCCGGW 1 cut(s) 1492
BsaXI ACNNNNNCTCC 4 cut(s) 55, 85, 2145, 2175
Bsc4I CCNNNNNNNGG 5 cut(s) 144, 631, 2044, 2605, 3287
Bse1I ACTGG 6 cut(s) 589, 1101, 1734, 2320, 2577, 3169
Bse3DI GCAATG 2 cut(s) 312, 2721
BseAI TCCGGA 1 cut(s) 1492
BseBI CCWGG 1 cut(s) 2903
BseLI CCNNNNNNNGG 5 cut(s) 144, 631, 2044, 2605, 3287
BseMI GCAATG 2 cut(s) 312, 2721
BseMII CTCAG 9 cut(s) 237, 309, 684, 766, 1419, 1584, 2082, 2205, 2306
BseNI ACTGG 6 cut(s) 589, 1101, 1734, 2320, 2577, 3169
BseRI GAGGAG 6 cut(s) 63, 160, 263, 1445, 2744, 2954
BseSI GKGCMC 2 cut(s) 2036, 2440
BseXI GCAGC 7 cut(s) 111, 202, 515, 978, 1720, 3195, 3260
BshFI GGCC 9 cut(s) 112, 187, 757, 861, 1647, 1871, 2131, 2670, 2958
BsiHKAI GWGCWC 1 cut(s) 2036
BsiHKCI CYCGRG 3 cut(s) 794, 1336, 1374
BsiSI CCGG 3 cut(s) 804, 1493, 2045
BslFI GGGAC 2 cut(s) 657, 3264
BslI CCNNNNNNNGG 5 cut(s) 144, 631, 2044, 2605, 3287
BsmAI GTCTC 1 cut(s) 1177
BsmFI GGGAC 2 cut(s) 657, 3264
BsmI GAATGC 2 cut(s) 1136, 1976
BsnI GGCC 9 cut(s) 112, 187, 757, 861, 1647, 1871, 2131, 2670, 2958
Bso31I GGTCTC 1 cut(s) 1177
BsoBI CYCGRG 3 cut(s) 794, 1336, 1374
Bsp119I TTCGAA 1 cut(s) 2795
Bsp1286I GDGCHC 3 cut(s) 753, 2036, 2440
Bsp13I TCCGGA 1 cut(s) 1492
Bsp1407I TGTACA 2 cut(s) 2267, 2660
BspACI CCGC 5 cut(s) 188, 529, 1219, 3052, 3270
BspANI GGCC 9 cut(s) 112, 187, 757, 861, 1647, 1871, 2131, 2670, 2958
BspCNI CTCAG 9 cut(s) 238, 310, 683, 765, 1420, 1583, 2083, 2206, 2305
BspEI TCCGGA 1 cut(s) 1492
BspHI TCATGA 1 cut(s) 1155
BspLI GGNNCC 1 cut(s) 862
BspMAI CTGCAG 1 cut(s) 3278
BspMI ACCTGC 1 cut(s) 899
BspPI GGATC 2 cut(s) 2412, 2957
BspT104I TTCGAA 1 cut(s) 2795
BspTI CTTAAG 1 cut(s) 647
BspTNI GGTCTC 1 cut(s) 1177
BsrDI GCAATG 2 cut(s) 312, 2721
BsrGI TGTACA 2 cut(s) 2267, 2660
BsrI ACTGG 6 cut(s) 589, 1101, 1734, 2320, 2577, 3169
BssNAI GTATAC 1 cut(s) 622
Bst1107I GTATAC 1 cut(s) 622
Bst2UI CCWGG 1 cut(s) 2903
Bst4CI ACNGT 9 cut(s) 448, 715, 883, 1030, 1259, 1481, 1708, 1897, 2357
Bst6I CTCTTC 2 cut(s) 1256, 2905
BstAFI CTTAAG 1 cut(s) 647
BstAPI GCANNNNNTGC 1 cut(s) 1286
BstAUI TGTACA 2 cut(s) 2267, 2660
BstBAI YACGTR 1 cut(s) 2273
BstBI TTCGAA 1 cut(s) 2795
BstC8I GCNNGC 4 cut(s) 1645, 2431, 2821, 3132
BstDEI CTNAG 9 cut(s) 246, 318, 670, 752, 1428, 1570, 2091, 2214, 2292
BstHHI GCGC 1 cut(s) 2067
BstMAI GTCTC 1 cut(s) 1177
BstMWI GCNNNNNNNGC 6 cut(s) 147, 512, 1286, 1352, 1406, 2435
BstNI CCWGG 1 cut(s) 2903
BstNSI RCATGY 2 cut(s) 364, 1633
BstSCI CCNGG 3 cut(s) 803, 2044, 2901
BstSFI CTRYAG 5 cut(s) 10, 447, 1528, 2610, 3274
BstSLI GKGCMC 2 cut(s) 2036, 2440
BstV1I GCAGC 7 cut(s) 111, 202, 515, 978, 1720, 3195, 3260
BstV2I GAAGAC 2 cut(s) 234, 2707
BstX2I RGATCY 2 cut(s) 2404, 2614
BstXI CCANNNNNNTGG 1 cut(s) 2887
BstYI RGATCY 2 cut(s) 2404, 2614
BstZ17I GTATAC 1 cut(s) 622
BsuI GTATCC 1 cut(s) 2531
BsuRI GGCC 9 cut(s) 112, 187, 757, 861, 1647, 1871, 2131, 2670, 2958
BtsIMutI CAGTG 6 cut(s) 243, 342, 1026, 1486, 2388, 2496
BveI ACCTGC 1 cut(s) 899
Cac8I GCNNGC 4 cut(s) 1645, 2431, 2821, 3132
CciI TCATGA 1 cut(s) 1155
CfoI GCGC 1 cut(s) 2067
Cfr13I GGNCC 2 cut(s) 860, 2669
Csp6I GTAC 6 cut(s) 15, 562, 791, 2268, 2661, 2875
CviAII CATG 7 cut(s) 361, 1156, 1513, 1630, 1662, 2477, 3259
CviQI GTAC 6 cut(s) 15, 562, 791, 2268, 2661, 2875
DdeI CTNAG 9 cut(s) 246, 318, 670, 752, 1428, 1570, 2091, 2214, 2292
DraI TTTAAA 1 cut(s) 2833
DriI GACNNNNNGTC 1 cut(s) 2869
EaeI YGGCCR 1 cut(s) 1645
Eam1104I CTCTTC 2 cut(s) 1256, 2905
Eam1105I GACNNNNNGTC 1 cut(s) 2869
EarI CTCTTC 2 cut(s) 1256, 2905
Eco147I AGGCCT 2 cut(s) 757, 2131
Eco24I GRGCYC 1 cut(s) 753
Eco31I GGTCTC 1 cut(s) 1177
Eco32I GATATC 1 cut(s) 1153
Eco57I CTGAAG 2 cut(s) 219, 2193
Eco88I CYCGRG 3 cut(s) 794, 1336, 1374
EcoRI GAATTC 1 cut(s) 1037
EcoRII CCWGG 1 cut(s) 2901
EcoRV GATATC 1 cut(s) 1153
EcoT22I ATGCAT 3 cut(s) 785, 1978, 2721
EcoT38I GRGCYC 1 cut(s) 753
FaeI CATG 7 cut(s) 364, 1159, 1516, 1633, 1665, 2480, 3262
FaqI GGGAC 2 cut(s) 657, 3264
FatI CATG 7 cut(s) 360, 1155, 1512, 1629, 1661, 2476, 3258
FauNDI CATATG 1 cut(s) 3295
FbaI TGATCA 2 cut(s) 177, 2017
FblI GTMKAC 5 cut(s) 450, 621, 1438, 2178, 3249
FriOI GRGCYC 1 cut(s) 753
FspBI CTAG 7 cut(s) 39, 327, 2228, 2342, 2600, 2705, 3057
GlaI GCGC 1 cut(s) 2066
GsuI CTGGAG 3 cut(s) 635, 1063, 2560
HaeIII GGCC 9 cut(s) 112, 187, 757, 861, 1647, 1871, 2131, 2670, 2958
HapII CCGG 3 cut(s) 804, 1493, 2045
HhaI GCGC 1 cut(s) 2067
Hin1II CATG 7 cut(s) 364, 1159, 1516, 1633, 1665, 2480, 3262
Hin6I GCGC 1 cut(s) 2065
HinP1I GCGC 1 cut(s) 2065
HindIII AAGCTT 1 cut(s) 2397
HinfI GANTC 9 cut(s) 334, 496, 1103, 1265, 1334, 1496, 2164, 2234, 2969
HpaII CCGG 3 cut(s) 804, 1493, 2045
HphI GGTGA 7 cut(s) 223, 1167, 1343, 2443, 2651, 2816, 3073
Hpy99I CGWCG 1 cut(s) 869
HpyAV CCTTC 9 cut(s) 87, 516, 693, 1160, 1678, 2051, 2661, 2843, 3132
HpyCH4III ACNGT 9 cut(s) 448, 715, 883, 1030, 1259, 1481, 1708, 1897, 2357
HpyCH4IV ACGT 3 cut(s) 867, 1199, 2272
HpyF10VI GCNNNNNNNGC 6 cut(s) 147, 512, 1286, 1352, 1406, 2435
HpyF3I CTNAG 9 cut(s) 246, 318, 670, 752, 1428, 1570, 2091, 2214, 2292
HpySE526I ACGT 3 cut(s) 867, 1199, 2272
Hsp92II CATG 7 cut(s) 364, 1159, 1516, 1633, 1665, 2480, 3262
HspAI GCGC 1 cut(s) 2065
Kpn2I TCCGGA 1 cut(s) 1492
Ksp22I TGATCA 2 cut(s) 177, 2017
LmnI GCTCC 3 cut(s) 147, 1075, 3127
Lsp1109I GCAGC 7 cut(s) 111, 202, 515, 978, 1720, 3195, 3260
LweI GCATC 8 cut(s) 411, 883, 1438, 2065, 2278, 2461, 2911, 3226
MaeI CTAG 7 cut(s) 39, 327, 2228, 2342, 2600, 2705, 3057
MaeII ACGT 3 cut(s) 867, 1199, 2272
MaeIII GTNAC 7 cut(s) 976, 1081, 1331, 1501, 1563, 1711, 2463
MflI RGATCY 2 cut(s) 2404, 2614
MhlI GDGCHC 3 cut(s) 753, 2036, 2440
MlyI GAGTC 1 cut(s) 1328
MmeI TCCRAC 4 cut(s) 1128, 1212, 1727, 3097
Mph1103I ATGCAT 3 cut(s) 785, 1978, 2721
MroI TCCGGA 1 cut(s) 1492
MroXI GAANNNNTTC 1 cut(s) 2370
MslI CAYNNNNRTG 3 cut(s) 1461, 1517, 2885
MspCI CTTAAG 1 cut(s) 647
MspI CCGG 3 cut(s) 804, 1493, 2045
MspR9I CCNGG 3 cut(s) 805, 2046, 2903
Mva1269I GAATGC 2 cut(s) 1136, 1976
MvaI CCWGG 1 cut(s) 2903
MwoI GCNNNNNNNGC 6 cut(s) 147, 512, 1286, 1352, 1406, 2435
NciI CCSGG 2 cut(s) 805, 2046
NdeI CATATG 1 cut(s) 3295
NlaIII CATG 7 cut(s) 364, 1159, 1516, 1633, 1665, 2480, 3262
NlaIV GGNNCC 1 cut(s) 862
NmeAIII GCCGAG 2 cut(s) 678, 1673
NmuCI GTSAC 2 cut(s) 1331, 1711
NsiI ATGCAT 3 cut(s) 785, 1978, 2721
NspI RCATGY 2 cut(s) 364, 1633
NspV TTCGAA 1 cut(s) 2795
PaeR7I CTCGAG 1 cut(s) 1374
PagI TCATGA 1 cut(s) 1155
PceI AGGCCT 2 cut(s) 757, 2131
PctI GAATGC 2 cut(s) 1136, 1976
PdmI GAANNNNTTC 1 cut(s) 2370
PfeI GAWTC 8 cut(s) 334, 496, 1103, 1265, 1496, 2164, 2234, 2969
PflMI CCANNNNNTGG 1 cut(s) 631
PleI GAGTC 1 cut(s) 1328
PpsI GAGTC 1 cut(s) 1328
Ppu21I YACGTR 1 cut(s) 2273
PshBI ATTAAT 2 cut(s) 2994, 3095
PsiI TTATAA 3 cut(s) 1509, 2783, 3147
Psp6I CCWGG 1 cut(s) 2901
PspGI CCWGG 1 cut(s) 2901
PspN4I GGNNCC 1 cut(s) 862
PspPI GGNCC 2 cut(s) 860, 2669
PspXI VCTCGAGB 1 cut(s) 1374
PstI CTGCAG 1 cut(s) 3278
PsuI RGATCY 2 cut(s) 2404, 2614
RsaI GTAC 6 cut(s) 16, 563, 792, 2269, 2662, 2876
RsaNI GTAC 6 cut(s) 15, 562, 791, 2268, 2661, 2875
RseI CAYNNNNRTG 3 cut(s) 1461, 1517, 2885
Sau96I GGNCC 2 cut(s) 860, 2669
ScaI AGTACT 2 cut(s) 16, 792
SchI GAGTC 1 cut(s) 1328
ScrFI CCNGG 3 cut(s) 805, 2046, 2903
SduI GDGCHC 3 cut(s) 753, 2036, 2440
SfaNI GCATC 8 cut(s) 411, 883, 1438, 2065, 2278, 2461, 2911, 3226
SfcI CTRYAG 5 cut(s) 10, 447, 1528, 2610, 3274
Sfr274I CTCGAG 1 cut(s) 1374
SfuI TTCGAA 1 cut(s) 2795
SlaI CTCGAG 1 cut(s) 1374
SmiMI CAYNNNNRTG 3 cut(s) 1461, 1517, 2885
SmlI CTYRAG 4 cut(s) 266, 647, 659, 1374
SmoI CTYRAG 4 cut(s) 266, 647, 659, 1374
SpeI ACTAGT 1 cut(s) 38
SseBI AGGCCT 2 cut(s) 757, 2131
SsiI CCGC 5 cut(s) 188, 529, 1219, 3052, 3270
SspI AATATT 2 cut(s) 1393, 2776
SspMI CTAG 7 cut(s) 39, 327, 2228, 2342, 2600, 2705, 3057
StuI AGGCCT 2 cut(s) 757, 2131
StyD4I CCNGG 3 cut(s) 803, 2044, 2901
TaaI ACNGT 9 cut(s) 448, 715, 883, 1030, 1259, 1481, 1708, 1897, 2357
TaiI ACGT 3 cut(s) 870, 1202, 2275
TaqI TCGA 5 cut(s) 499, 1375, 2257, 2364, 2795
TaqII GACCGA 1 cut(s) 2196
TatI WGTACW 4 cut(s) 14, 790, 2267, 2660
TauI GCSGC 2 cut(s) 190, 3273
TfiI GAWTC 8 cut(s) 334, 496, 1103, 1265, 1496, 2164, 2234, 2969
TscAI CASTG 6 cut(s) 243, 349, 1033, 1486, 2395, 2503
TseFI GTSAC 2 cut(s) 1331, 1711
TseI GCWGC 8 cut(s) 6, 124, 190, 503, 991, 1733, 3208, 3273
Tsp45I GTSAC 2 cut(s) 1331, 1711
TspGWI ACGGA 1 cut(s) 3028
TspRI CASTG 6 cut(s) 243, 349, 1033, 1486, 2395, 2503
Van91I CCANNNNNTGG 1 cut(s) 631
Vha464I CTTAAG 1 cut(s) 647
VneI GTGCAC 1 cut(s) 2032
VspI ATTAAT 2 cut(s) 2994, 3095
XapI RAATTY 3 cut(s) 828, 1037, 2296
XceI RCATGY 2 cut(s) 364, 1633
XhoI CTCGAG 1 cut(s) 1374
XmiI GTMKAC 5 cut(s) 450, 621, 1438, 2178, 3249
XmnI GAANNNNTTC 1 cut(s) 2370
XspI CTAG 7 cut(s) 39, 327, 2228, 2342, 2600, 2705, 3057
ZrmI AGTACT 2 cut(s) 16, 792
Zsp2I ATGCAT 3 cut(s) 785, 1978, 2721
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.