Rorug06G0398700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0009462
Physical Location & Seq
Forward (+)
54394133 .. 54395749
1617 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0398700.1

Sequence Viewer

Length: 474 bp
ATGAAAAGGGTGGCTGTTAATTCTAAGAACACCTCTGTTGTTGACGACCAAGCTAAGCTTCAATTGAGACATCAAACTCTTCTGCAAGATCACCTTGACCTCCAAAAGGAGGTTGTGACTAAGAAGAAGAAATTGCAAGCTGCAAAGCAGAAGAGAGACATCCTTTTGGCTGAAATTGGATTTCTGAGAAGAAGGCTGAGGCATTTGCAGAAGCTAAAATCTGCAGAAACCGAACCAAAAGTTGTCCAGCATGAAACTTCCAACACAAAATCTATAAAGTTTTCAAGGAAGAGGAACAATGATGCCAGTGAAGCTGTTCCAAGTAAACACTCCCATGTGGTGCACAAAGAAGGAGAAGAACTTGTTTGGGAGCCCATAAGAGTAGAGAAGAAGTCTAAAACTTGGTTAATCAATGACAAACGAGTTGGAAAGAGAAAAATTGAAGTGCAAGATGAGGTTGCTTTGAATGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TamB

Protein Analysis

157

Amino Acids

18.26

Weight (kDa)

10.13

Isoelectric Point (pI)

57.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 2 cut(s) 106, 109
AgsI TTSAA 4 cut(s) 62, 285, 443, 466
AjuI GAANNNNNNNTTGG 2 cut(s) 42, 74
AluBI AGCT 5 cut(s) 53, 58, 140, 214, 314
AluI AGCT 5 cut(s) 53, 58, 140, 214, 314
Alw21I GWGCWC 1 cut(s) 345
Alw26I GTCTC 2 cut(s) 61, 150
Alw44I GTGCAC 1 cut(s) 341
ApaLI GTGCAC 1 cut(s) 341
ApeKI GCWGC 1 cut(s) 140
Asp700I GAANNNNTTC 1 cut(s) 315
AsuHPI GGTGA 1 cut(s) 83
BaeGI GKGCMC 1 cut(s) 345
BanII GRGCYC 1 cut(s) 375
Bbv12I GWGCWC 1 cut(s) 345
BbvCI CCTCAGC 1 cut(s) 197
BbvI GCAGC 1 cut(s) 127
BcoDI GTCTC 2 cut(s) 61, 150
BfmI CTRYAG 1 cut(s) 222
BisI GCNGC 1 cut(s) 141
BlpI GCTNAGC 1 cut(s) 54
BlsI GCNGC 1 cut(s) 142
BmiI GGNNCC 1 cut(s) 372
BmsI GCATC 1 cut(s) 292
Bpu10I CCTNAGC 1 cut(s) 197
Bpu1102I GCTNAGC 1 cut(s) 54
Bsc4I CCNNNNNNNGG 2 cut(s) 106, 109
Bse1I ACTGG 1 cut(s) 306
BseGI GGATG 1 cut(s) 159
BseLI CCNNNNNNNGG 2 cut(s) 106, 109
BseMII CTCAG 2 cut(s) 176, 188
BseNI ACTGG 1 cut(s) 306
BseSI GKGCMC 1 cut(s) 345
BseXI GCAGC 1 cut(s) 127
BsiHKAI GWGCWC 1 cut(s) 345
BslI CCNNNNNNNGG 2 cut(s) 106, 109
BsmAI GTCTC 2 cut(s) 61, 150
Bsp1286I GDGCHC 2 cut(s) 345, 375
Bsp143I GATC 1 cut(s) 88
Bsp1720I GCTNAGC 1 cut(s) 54
BspCNI CTCAG 2 cut(s) 177, 189
BspLI GGNNCC 1 cut(s) 372
BspMAI CTGCAG 1 cut(s) 226
BsrI ACTGG 1 cut(s) 306
BssMI GATC 1 cut(s) 88
Bst6I CTCTTC 3 cut(s) 84, 146, 284
BstC8I GCNNGC 1 cut(s) 138
BstDEI CTNAG 5 cut(s) 24, 54, 120, 185, 197
BstENI CCTNNNNNAGG 1 cut(s) 104
BstF5I GGATG 1 cut(s) 159
BstKTI GATC 1 cut(s) 91
BstMAI GTCTC 2 cut(s) 61, 150
BstMBI GATC 1 cut(s) 88
BstMWI GCNNNNNNNGC 1 cut(s) 311
BstSFI CTRYAG 1 cut(s) 222
BstSLI GKGCMC 1 cut(s) 345
BstV1I GCAGC 1 cut(s) 127
BtsCI GGATG 1 cut(s) 159
BtsIMutI CAGTG 1 cut(s) 313
Cac8I GCNNGC 1 cut(s) 138
CviAII CATG 2 cut(s) 251, 335
CviJI RGCY 9 cut(s) 14, 53, 58, 140, 170, 196, 214, 314, 373
CviKI_1 RGCY 9 cut(s) 14, 53, 58, 140, 170, 196, 214, 314, 373
DdeI CTNAG 5 cut(s) 24, 54, 120, 185, 197
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
Eam1104I CTCTTC 3 cut(s) 84, 146, 284
EarI CTCTTC 3 cut(s) 84, 146, 284
Eco24I GRGCYC 1 cut(s) 375
EcoNI CCTNNNNNAGG 1 cut(s) 104
EcoT38I GRGCYC 1 cut(s) 375
FaeI CATG 2 cut(s) 254, 338
FaiI YATR 4 cut(s) 252, 275, 336, 377
FalI AAGNNNNNCTT 4 cut(s) 42, 74, 78, 110
FatI CATG 2 cut(s) 250, 334
Fnu4HI GCNGC 1 cut(s) 141
FokI GGATG 1 cut(s) 146
FriOI GRGCYC 1 cut(s) 375
Fsp4HI GCNGC 1 cut(s) 141
GluI GCNGC 1 cut(s) 141
Hin1II CATG 2 cut(s) 254, 338
HincII GTYRAC 1 cut(s) 43
HindII GTYRAC 1 cut(s) 43
HindIII AAGCTT 1 cut(s) 56
HphI GGTGA 1 cut(s) 83
Hpy166II GTNNAC 3 cut(s) 43, 326, 343
Hpy188I TCNGA 1 cut(s) 186
Hpy8I GTNNAC 3 cut(s) 43, 326, 343
HpyAV CCTTC 2 cut(s) 186, 344
HpyCH4V TGCA 7 cut(s) 85, 136, 143, 208, 224, 343, 448
HpyF10VI GCNNNNNNNGC 1 cut(s) 311
HpyF3I CTNAG 5 cut(s) 24, 54, 120, 185, 197
Hsp92II CATG 2 cut(s) 254, 338
Kzo9I GATC 1 cut(s) 88
LmnI GCTCC 1 cut(s) 370
LpnPI CCDG 2 cut(s) 260, 319
Lsp1109I GCAGC 1 cut(s) 127
LweI GCATC 1 cut(s) 292
MaeIII GTNAC 1 cut(s) 115
MalI GATC 1 cut(s) 90
MboI GATC 1 cut(s) 88
MboII GAAGA 8 cut(s) 71, 136, 139, 163, 201, 301, 368, 400
MfeI CAATTG 1 cut(s) 62
MhlI GDGCHC 2 cut(s) 345, 375
MluCI AATT 5 cut(s) 19, 62, 131, 174, 438
MmeI TCCRAC 2 cut(s) 285, 406
MnlI CCTC 6 cut(s) 43, 103, 110, 192, 285, 448
MroXI GAANNNNTTC 1 cut(s) 315
MseI TTAA 3 cut(s) 18, 407, 472
MslI CAYNNNNRTG 1 cut(s) 333
MunI CAATTG 1 cut(s) 62
MwoI GCNNNNNNNGC 1 cut(s) 311
NdeII GATC 1 cut(s) 88
NlaIII CATG 2 cut(s) 254, 338
NlaIV GGNNCC 1 cut(s) 372
NmuCI GTSAC 1 cut(s) 115
PdmI GAANNNNTTC 1 cut(s) 315
PkrI GCNGC 1 cut(s) 142
PspN4I GGNNCC 1 cut(s) 372
PstI CTGCAG 1 cut(s) 226
RseI CAYNNNNRTG 1 cut(s) 333
SaqAI TTAA 3 cut(s) 18, 407, 472
SatI GCNGC 1 cut(s) 141
Sau3AI GATC 1 cut(s) 88
SduI GDGCHC 2 cut(s) 345, 375
SfaNI GCATC 1 cut(s) 292
SfcI CTRYAG 1 cut(s) 222
SmiMI CAYNNNNRTG 1 cut(s) 333
Sse9I AATT 5 cut(s) 19, 62, 131, 174, 438
TasI AATT 5 cut(s) 19, 62, 131, 174, 438
Tru1I TTAA 3 cut(s) 18, 407, 472
Tru9I TTAA 3 cut(s) 18, 407, 472
TscAI CASTG 1 cut(s) 313
TseFI GTSAC 1 cut(s) 115
TseI GCWGC 1 cut(s) 140
Tsp45I GTSAC 1 cut(s) 115
TspDTI ATGAA 2 cut(s) 17, 267
TspRI CASTG 1 cut(s) 313
VneI GTGCAC 1 cut(s) 341
XagI CCTNNNNNAGG 1 cut(s) 104
XmnI GAANNNNTTC 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.