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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G25660 AT2G25660 AT2G25660 AT2G25660 |
| fragaria_vesca | FvH4_2g30180 |
| malus_domestica | MD08G1135800.v1.1 MD15G1115200.v1.1 |
| prunus_persica | Prupe.1G466400_v2.0.a1 Prupe.1G466400_v2.0.a1 |
| pyrus_communis | pycom08g11480 pycom15g10380 |
| rosa_chinensis | RchiOBHm_Chr6g0312731 |
| rosa_laevigata | RLG00000010303 |
| rosa_multiflora | Rmu_ssc0000412.1_g000012 |
| rosa_roxburghii | Rroxscaffold_7G00156550 |
| rosa_rugosa | Rorug06G0398700 Rorug06G0398900 |
| rosa_samantha | Rh6AG516100 Rh6BG527400 Rh6CG532300 Rh6DG518400 |
| rosa_wichuraiana | Rw6G044840 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2946 |
| AarI | CACCTGC | 1 cut(s) | 1424 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 818 |
| Acc16I | TGCGCA | 1 cut(s) | 492 |
| Acc36I | ACCTGC | 4 cut(s) | 1142, 1424, 5184, 5491 |
| AccB1I | GGYRCC | 1 cut(s) | 4526 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1328, 5880 |
| AccI | GTMKAC | 1 cut(s) | 1641 |
| AccII | CGCG | 3 cut(s) | 294, 2132, 4212 |
| AccIII | TCCGGA | 1 cut(s) | 1073 |
| AcoI | YGGCCR | 3 cut(s) | 2152, 3620, 6162 |
| AcvI | CACGTG | 1 cut(s) | 3317 |
| AdeI | CACNNNGTG | 1 cut(s) | 3416 |
| AflIII | ACRYGT | 2 cut(s) | 1783, 4680 |
| AgeI | ACCGGT | 1 cut(s) | 5053 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 1861, 3228 |
| AhlI | ACTAGT | 1 cut(s) | 1142 |
| AjnI | CCWGG | 9 cut(s) | 245, 1499, 2722, 3754, 4081, 4254, 4518, 4727, 5268 |
| AleI | CACNNNNGTG | 1 cut(s) | 3319 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 4605, 4637 |
| Alw21I | GWGCWC | 2 cut(s) | 167, 4098 |
| Alw26I | GTCTC | 7 cut(s) | 1583, 2791, 2975, 3236, 3263, 3859, 4013 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 2345, 2432, 5880 |
| Ama87I | CYCGRG | 4 cut(s) | 1758, 2234, 2856, 5449 |
| Aor13HI | TCCGGA | 1 cut(s) | 1073 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 3706, 3738 |
| AseI | ATTAAT | 2 cut(s) | 1988, 2895 |
| AsiGI | ACCGGT | 1 cut(s) | 5053 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 1198, 1336, 2049, 2300, 4062 |
| AspA2I | CCTAGG | 1 cut(s) | 5411 |
| AspLEI | GCGC | 7 cut(s) | 294, 493, 1608, 1957, 2878, 4212, 4254 |
| AsuC2I | CCSGG | 2 cut(s) | 592, 876 |
| AsuII | TTCGAA | 1 cut(s) | 316 |
| AsuNHI | GCTAGC | 2 cut(s) | 598, 3491 |
| AvaI | CYCGRG | 4 cut(s) | 1758, 2234, 2856, 5449 |
| AvrII | CCTAGG | 1 cut(s) | 5411 |
| BaeGI | GKGCMC | 2 cut(s) | 1018, 5269 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 3494, 3527, 6174, 6207 |
| BalI | TGGCCA | 2 cut(s) | 2154, 6164 |
| BamHI | GGATCC | 2 cut(s) | 2786, 6145 |
| BanI | GGYRCC | 1 cut(s) | 4526 |
| BanII | GRGCYC | 1 cut(s) | 4098 |
| BbrPI | CACGTG | 1 cut(s) | 3317 |
| BbsI | GAAGAC | 1 cut(s) | 6206 |
| Bbv12I | GWGCWC | 2 cut(s) | 167, 4098 |
| BbvCI | CCTCAGC | 2 cut(s) | 3885, 5615 |
| BceAI | ACGGC | 4 cut(s) | 164, 2838, 4439, 4514 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 3076, 3110, 5430, 5464 |
| BciT130I | CCWGG | 9 cut(s) | 247, 1501, 2724, 3756, 4083, 4256, 4520, 4729, 5270 |
| BciVI | GTATCC | 2 cut(s) | 513, 4816 |
| BclI | TGATCA | 2 cut(s) | 574, 1486 |
| BcnI | CCSGG | 2 cut(s) | 592, 876 |
| BcoDI | GTCTC | 7 cut(s) | 1583, 2791, 2975, 3236, 3263, 3859, 4013 |
| BcuI | ACTAGT | 1 cut(s) | 1142 |
| BfmI | CTRYAG | 5 cut(s) | 542, 660, 1887, 2346, 6308 |
| BfuAI | ACCTGC | 4 cut(s) | 1142, 1424, 5184, 5491 |
| BfuI | GTATCC | 2 cut(s) | 513, 4816 |
| BglII | AGATCT | 2 cut(s) | 4263, 5824 |
| BlnI | CCTAGG | 1 cut(s) | 5411 |
| BmcAI | AGTACT | 1 cut(s) | 273 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 1861, 3228 |
| BmeT110I | CYCGRG | 4 cut(s) | 1758, 2234, 2856, 5449 |
| BmrI | ACTGGG | 3 cut(s) | 2416, 4192, 4638 |
| BmtI | GCTAGC | 2 cut(s) | 602, 3495 |
| BmuI | ACTGGG | 3 cut(s) | 2416, 4192, 4638 |
| BpiI | GAAGAC | 1 cut(s) | 6206 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1710, 1742 |
| BpmI | CTGGAG | 3 cut(s) | 814, 1569, 2235 |
| Bpu10I | CCTNAGC | 3 cut(s) | 3885, 5615, 5762 |
| Bpu14I | TTCGAA | 1 cut(s) | 316 |
| BpuEI | CTTGAG | 2 cut(s) | 3934, 4043 |
| BpuMI | CCSGG | 2 cut(s) | 592, 876 |
| Bsa29I | ATCGAT | 2 cut(s) | 2713, 5693 |
| BsaAI | YACGTR | 2 cut(s) | 3032, 3317 |
| BsaBI | GATNNNNATC | 2 cut(s) | 5023, 5736 |
| BsaI | GGTCTC | 3 cut(s) | 1583, 2791, 3263 |
| BsaWI | WCCGGW | 3 cut(s) | 1073, 1185, 5053 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 131, 161 |
| Bse118I | RCCGGY | 1 cut(s) | 5053 |
| Bse3DI | GCAATG | 6 cut(s) | 1442, 4147, 4243, 4969, 6264, 6269 |
| Bse8I | GATNNNNATC | 2 cut(s) | 5023, 5736 |
| BseAI | TCCGGA | 1 cut(s) | 1073 |
| BseBI | CCWGG | 9 cut(s) | 247, 1501, 2724, 3756, 4083, 4256, 4520, 4729, 5270 |
| BseCI | ATCGAT | 2 cut(s) | 2713, 5693 |
| BseJI | GATNNNNATC | 2 cut(s) | 5023, 5736 |
| BseMI | GCAATG | 6 cut(s) | 1442, 4147, 4243, 4969, 6264, 6269 |
| BseRI | GAGGAG | 5 cut(s) | 120, 155, 451, 2055, 2874 |
| BseSI | GKGCMC | 2 cut(s) | 1018, 5269 |
| BseYI | CCCAGC | 4 cut(s) | 624, 2618, 3818, 4818 |
| BsgI | GTGCAG | 3 cut(s) | 1026, 1679, 4439 |
| Bsh1236I | CGCG | 3 cut(s) | 294, 2132, 4212 |
| BshNI | GGYRCC | 1 cut(s) | 4526 |
| BshTI | ACCGGT | 1 cut(s) | 5053 |
| BshVI | ATCGAT | 2 cut(s) | 2713, 5693 |
| BsiHKAI | GWGCWC | 2 cut(s) | 167, 4098 |
| BsiHKCI | CYCGRG | 4 cut(s) | 1758, 2234, 2856, 5449 |
| BsiSI | CCGG | 5 cut(s) | 592, 875, 1074, 1186, 5054 |
| BslFI | GGGAC | 7 cut(s) | 380, 927, 2404, 4050, 4160, 4318, 4745 |
| BsmAI | GTCTC | 7 cut(s) | 1583, 2791, 2975, 3236, 3263, 3859, 4013 |
| BsmFI | GGGAC | 7 cut(s) | 380, 927, 2404, 4050, 4160, 4318, 4745 |
| BsmI | GAATGC | 2 cut(s) | 1246, 2629 |
| Bso31I | GGTCTC | 3 cut(s) | 1583, 2791, 3263 |
| BsoBI | CYCGRG | 4 cut(s) | 1758, 2234, 2856, 5449 |
| Bsp119I | TTCGAA | 1 cut(s) | 316 |
| Bsp1286I | GDGCHC | 4 cut(s) | 167, 1018, 4098, 5269 |
| Bsp13I | TCCGGA | 1 cut(s) | 1073 |
| Bsp1407I | TGTACA | 2 cut(s) | 1705, 4636 |
| Bsp19I | CCATGG | 2 cut(s) | 4735, 5341 |
| BspDI | ATCGAT | 2 cut(s) | 2713, 5693 |
| BspEI | TCCGGA | 1 cut(s) | 1073 |
| BspFNI | CGCG | 3 cut(s) | 294, 2132, 4212 |
| BspMAI | CTGCAG | 4 cut(s) | 546, 664, 1891, 2350 |
| BspMI | ACCTGC | 4 cut(s) | 1142, 1424, 5184, 5491 |
| BspOI | GCTAGC | 2 cut(s) | 602, 3495 |
| BspQI | GCTCTTC | 1 cut(s) | 1999 |
| BspT104I | TTCGAA | 1 cut(s) | 316 |
| BspT107I | GGYRCC | 1 cut(s) | 4526 |
| BspTNI | GGTCTC | 3 cut(s) | 1583, 2791, 3263 |
| BsrDI | GCAATG | 6 cut(s) | 1442, 4147, 4243, 4969, 6264, 6269 |
| BsrFI | RCCGGY | 1 cut(s) | 5053 |
| BsrGI | TGTACA | 2 cut(s) | 1705, 4636 |
| BssAI | RCCGGY | 1 cut(s) | 5053 |
| BssT1I | CCWWGG | 5 cut(s) | 228, 4735, 5203, 5341, 5411 |
| Bst2UI | CCWGG | 9 cut(s) | 247, 1501, 2724, 3756, 4083, 4256, 4520, 4729, 5270 |
| Bst6I | CTCTTC | 2 cut(s) | 1999, 3586 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 4226 |
| BstAUI | TGTACA | 2 cut(s) | 1705, 4636 |
| BstBAI | YACGTR | 2 cut(s) | 3032, 3317 |
| BstBI | TTCGAA | 1 cut(s) | 316 |
| BstDSI | CCRYGG | 4 cut(s) | 2149, 3544, 4735, 5341 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 3443, 5032, 5424 |
| BstFNI | CGCG | 3 cut(s) | 294, 2132, 4212 |
| BstHHI | GCGC | 7 cut(s) | 294, 493, 1608, 1957, 2878, 4212, 4254 |
| BstMAI | GTCTC | 7 cut(s) | 1583, 2791, 2975, 3236, 3263, 3859, 4013 |
| BstNI | CCWGG | 9 cut(s) | 247, 1501, 2724, 3756, 4083, 4256, 4520, 4729, 5270 |
| BstNSI | RCATGY | 8 cut(s) | 842, 1606, 1787, 1820, 1928, 2035, 4637, 4684 |
| BstSFI | CTRYAG | 5 cut(s) | 542, 660, 1887, 2346, 6308 |
| BstSLI | GKGCMC | 2 cut(s) | 1018, 5269 |
| BstSNI | TACGTA | 1 cut(s) | 3032 |
| BstUI | CGCG | 3 cut(s) | 294, 2132, 4212 |
| BstV2I | GAAGAC | 1 cut(s) | 6206 |
| BstX2I | RGATCY | 7 cut(s) | 2786, 3934, 4263, 5812, 5824, 6111, 6145 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 1992, 4301, 5395 |
| BstYI | RGATCY | 7 cut(s) | 2786, 3934, 4263, 5812, 5824, 6111, 6145 |
| Bsu15I | ATCGAT | 2 cut(s) | 2713, 5693 |
| BsuI | GTATCC | 2 cut(s) | 513, 4816 |
| BsuTUI | ATCGAT | 2 cut(s) | 2713, 5693 |
| BtgI | CCRYGG | 4 cut(s) | 2149, 3544, 4735, 5341 |
| BtgZI | GCGATG | 4 cut(s) | 2113, 2865, 3827, 4785 |
| BtsI | GCAGTG | 2 cut(s) | 802, 2355 |
| BveI | ACCTGC | 4 cut(s) | 1142, 1424, 5184, 5491 |
| CaiI | CAGNNNCTG | 3 cut(s) | 2345, 2432, 5880 |
| CfoI | GCGC | 7 cut(s) | 294, 493, 1608, 1957, 2878, 4212, 4254 |
| Cfr10I | RCCGGY | 1 cut(s) | 5053 |
| ClaI | ATCGAT | 2 cut(s) | 2713, 5693 |
| CseI | GACGC | 2 cut(s) | 2199, 5936 |
| CspAI | ACCGGT | 1 cut(s) | 5053 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2161, 2196 |
| DraI | TTTAAA | 3 cut(s) | 2763, 3141, 4854 |
| DraIII | CACNNNGTG | 1 cut(s) | 3416 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 818 |
| DriI | GACNNNNNGTC | 2 cut(s) | 1861, 3228 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 818 |
| EaeI | YGGCCR | 3 cut(s) | 2152, 3620, 6162 |
| Eam1104I | CTCTTC | 2 cut(s) | 1999, 3586 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 1861, 3228 |
| EarI | CTCTTC | 2 cut(s) | 1999, 3586 |
| Ecl136II | GAGCTC | 1 cut(s) | 4096 |
| Eco105I | TACGTA | 1 cut(s) | 3032 |
| Eco130I | CCWWGG | 5 cut(s) | 228, 4735, 5203, 5341, 5411 |
| Eco147I | AGGCCT | 1 cut(s) | 6221 |
| Eco24I | GRGCYC | 1 cut(s) | 4098 |
| Eco31I | GGTCTC | 3 cut(s) | 1583, 2791, 3263 |
| Eco32I | GATATC | 4 cut(s) | 186, 324, 832, 2866 |
| Eco53kI | GAGCTC | 1 cut(s) | 4096 |
| Eco72I | CACGTG | 1 cut(s) | 3317 |
| Eco88I | CYCGRG | 4 cut(s) | 1758, 2234, 2856, 5449 |
| EcoICRI | GAGCTC | 1 cut(s) | 4096 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 3443, 5032, 5424 |
| EcoO109I | RGGNCCY | 4 cut(s) | 394, 914, 2841, 3961 |
| EcoRI | GAATTC | 2 cut(s) | 990, 1450 |
| EcoRII | CCWGG | 9 cut(s) | 245, 1499, 2722, 3754, 4081, 4254, 4518, 4727, 5268 |
| EcoRV | GATATC | 4 cut(s) | 186, 324, 832, 2866 |
| EcoT14I | CCWWGG | 5 cut(s) | 228, 4735, 5203, 5341, 5411 |
| EcoT22I | ATGCAT | 5 cut(s) | 776, 2629, 3099, 5026, 5120 |
| EcoT38I | GRGCYC | 1 cut(s) | 4098 |
| ErhI | CCWWGG | 5 cut(s) | 228, 4735, 5203, 5341, 5411 |
| FaqI | GGGAC | 7 cut(s) | 380, 927, 2404, 4050, 4160, 4318, 4745 |
| FauI | CCCGC | 2 cut(s) | 3946, 5238 |
| FauNDI | CATATG | 2 cut(s) | 1483, 1741 |
| FbaI | TGATCA | 2 cut(s) | 574, 1486 |
| FblI | GTMKAC | 1 cut(s) | 1641 |
| FriOI | GRGCYC | 1 cut(s) | 4098 |
| FspI | TGCGCA | 1 cut(s) | 492 |
| GlaI | GCGC | 7 cut(s) | 293, 492, 1607, 1956, 2877, 4211, 4253 |
| GsaI | CCCAGC | 4 cut(s) | 628, 2622, 3822, 4822 |
| GsuI | CTGGAG | 3 cut(s) | 814, 1569, 2235 |
| HapII | CCGG | 5 cut(s) | 592, 875, 1074, 1186, 5054 |
| HgaI | GACGC | 2 cut(s) | 2199, 5936 |
| HhaI | GCGC | 7 cut(s) | 294, 493, 1608, 1957, 2878, 4212, 4254 |
| Hin6I | GCGC | 7 cut(s) | 292, 491, 1606, 1955, 2876, 4210, 4252 |
| HinP1I | GCGC | 7 cut(s) | 292, 491, 1606, 1955, 2876, 4210, 4252 |
| HincII | GTYRAC | 4 cut(s) | 1642, 1903, 4926, 5275 |
| HindII | GTYRAC | 4 cut(s) | 1642, 1903, 4926, 5275 |
| HindIII | AAGCTT | 4 cut(s) | 2137, 3976, 5594, 6017 |
| HpaI | GTTAAC | 1 cut(s) | 4926 |
| HpaII | CCGG | 5 cut(s) | 592, 875, 1074, 1186, 5054 |
| Hpy99I | CGWCG | 2 cut(s) | 1646, 5747 |
| HpyCH4IV | ACGT | 4 cut(s) | 3031, 3316, 3505, 6211 |
| HpySE526I | ACGT | 4 cut(s) | 3031, 3316, 3505, 6211 |
| HspAI | GCGC | 7 cut(s) | 292, 491, 1606, 1955, 2876, 4210, 4252 |
| Kpn2I | TCCGGA | 1 cut(s) | 1073 |
| Ksp22I | TGATCA | 2 cut(s) | 574, 1486 |
| KspAI | GTTAAC | 1 cut(s) | 4926 |
| LguI | GCTCTTC | 1 cut(s) | 1999 |
| LmnI | GCTCC | 8 cut(s) | 2113, 2383, 2830, 3546, 3709, 4521, 5545, 6322 |
| MaeII | ACGT | 4 cut(s) | 3031, 3316, 3505, 6211 |
| MfeI | CAATTG | 4 cut(s) | 2100, 3422, 5969, 6225 |
| MflI | RGATCY | 7 cut(s) | 2786, 3934, 4263, 5812, 5824, 6111, 6145 |
| MhlI | GDGCHC | 4 cut(s) | 167, 1018, 4098, 5269 |
| MlsI | TGGCCA | 2 cut(s) | 2154, 6164 |
| MluNI | TGGCCA | 2 cut(s) | 2154, 6164 |
| MlyI | GAGTC | 4 cut(s) | 4489, 5964, 5987, 6239 |
| MmeI | TCCRAC | 5 cut(s) | 500, 3499, 3507, 3970, 6223 |
| Mox20I | TGGCCA | 2 cut(s) | 2154, 6164 |
| Mph1103I | ATGCAT | 5 cut(s) | 776, 2629, 3099, 5026, 5120 |
| MroI | TCCGGA | 1 cut(s) | 1073 |
| MroXI | GAANNNNTTC | 5 cut(s) | 1198, 1336, 2049, 2300, 4062 |
| MscI | TGGCCA | 2 cut(s) | 2154, 6164 |
| MslI | CAYNNNNRTG | 7 cut(s) | 1990, 2518, 3319, 4176, 4299, 4919, 5282 |
| Msp20I | TGGCCA | 2 cut(s) | 2154, 6164 |
| MspA1I | CMGCKG | 4 cut(s) | 617, 2329, 3941, 5519 |
| MspI | CCGG | 5 cut(s) | 592, 875, 1074, 1186, 5054 |
| MssI | GTTTAAAC | 1 cut(s) | 4854 |
| MunI | CAATTG | 4 cut(s) | 2100, 3422, 5969, 6225 |
| Mva1269I | GAATGC | 2 cut(s) | 1246, 2629 |
| MvaI | CCWGG | 9 cut(s) | 247, 1501, 2724, 3756, 4083, 4256, 4520, 4729, 5270 |
| MvnI | CGCG | 3 cut(s) | 294, 2132, 4212 |
| NciI | CCSGG | 2 cut(s) | 592, 876 |
| NcoI | CCATGG | 2 cut(s) | 4735, 5341 |
| NdeI | CATATG | 2 cut(s) | 1483, 1741 |
| NheI | GCTAGC | 2 cut(s) | 598, 3491 |
| NmeAIII | GCCGAG | 2 cut(s) | 4742, 6075 |
| NmuCI | GTSAC | 5 cut(s) | 1745, 2077, 2341, 3398, 5899 |
| NsbI | TGCGCA | 1 cut(s) | 492 |
| NsiI | ATGCAT | 5 cut(s) | 776, 2629, 3099, 5026, 5120 |
| NspI | RCATGY | 8 cut(s) | 842, 1606, 1787, 1820, 1928, 2035, 4637, 4684 |
| NspV | TTCGAA | 1 cut(s) | 316 |
| OliI | CACNNNNGTG | 1 cut(s) | 3319 |
| PaeI | GCATGC | 2 cut(s) | 1606, 1928 |
| PaeR7I | CTCGAG | 3 cut(s) | 1758, 2856, 5449 |
| PaqCI | CACCTGC | 1 cut(s) | 1424 |
| PceI | AGGCCT | 1 cut(s) | 6221 |
| PciI | ACATGT | 2 cut(s) | 1783, 4680 |
| PciSI | GCTCTTC | 1 cut(s) | 1999 |
| PctI | GAATGC | 2 cut(s) | 1246, 2629 |
| PdmI | GAANNNNTTC | 5 cut(s) | 1198, 1336, 2049, 2300, 4062 |
| PflFI | GACNNNGTC | 1 cut(s) | 1646 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1328, 5880 |
| PfoI | TCCNGGA | 1 cut(s) | 4518 |
| PinAI | ACCGGT | 1 cut(s) | 5053 |
| PleI | GAGTC | 4 cut(s) | 4488, 5963, 5986, 6239 |
| PmaCI | CACGTG | 1 cut(s) | 3317 |
| PmeI | GTTTAAAC | 1 cut(s) | 4854 |
| PmlI | CACGTG | 1 cut(s) | 3317 |
| PpsI | GAGTC | 4 cut(s) | 4488, 5963, 5986, 6239 |
| Ppu21I | YACGTR | 2 cut(s) | 3032, 3317 |
| PpuMI | RGGWCCY | 4 cut(s) | 394, 914, 2841, 3961 |
| PscI | ACATGT | 2 cut(s) | 1783, 4680 |
| PshBI | ATTAAT | 2 cut(s) | 1988, 2895 |
| PsiI | TTATAA | 1 cut(s) | 2946 |
| Psp124BI | GAGCTC | 1 cut(s) | 4098 |
| Psp5II | RGGWCCY | 4 cut(s) | 394, 914, 2841, 3961 |
| Psp6I | CCWGG | 9 cut(s) | 245, 1499, 2722, 3754, 4081, 4254, 4518, 4727, 5268 |
| PspCI | CACGTG | 1 cut(s) | 3317 |
| PspFI | CCCAGC | 4 cut(s) | 624, 2618, 3818, 4818 |
| PspGI | CCWGG | 9 cut(s) | 245, 1499, 2722, 3754, 4081, 4254, 4518, 4727, 5268 |
| PspPPI | RGGWCCY | 4 cut(s) | 394, 914, 2841, 3961 |
| PspXI | VCTCGAGB | 1 cut(s) | 2856 |
| PstI | CTGCAG | 4 cut(s) | 546, 664, 1891, 2350 |
| PstNI | CAGNNNCTG | 3 cut(s) | 2345, 2432, 5880 |
| PsuI | RGATCY | 7 cut(s) | 2786, 3934, 4263, 5812, 5824, 6111, 6145 |
| PsyI | GACNNNGTC | 1 cut(s) | 1646 |
| PvuII | CAGCTG | 1 cut(s) | 617 |
| RseI | CAYNNNNRTG | 7 cut(s) | 1990, 2518, 3319, 4176, 4299, 4919, 5282 |
| SacI | GAGCTC | 1 cut(s) | 4098 |
| SalI | GTCGAC | 1 cut(s) | 1640 |
| SapI | GCTCTTC | 1 cut(s) | 1999 |
| ScaI | AGTACT | 1 cut(s) | 273 |
| SchI | GAGTC | 4 cut(s) | 4489, 5964, 5987, 6239 |
| SduI | GDGCHC | 4 cut(s) | 167, 1018, 4098, 5269 |
| SfcI | CTRYAG | 5 cut(s) | 542, 660, 1887, 2346, 6308 |
| Sfr274I | CTCGAG | 3 cut(s) | 1758, 2856, 5449 |
| SfuI | TTCGAA | 1 cut(s) | 316 |
| SlaI | CTCGAG | 3 cut(s) | 1758, 2856, 5449 |
| SmiI | ATTTAAAT | 1 cut(s) | 2763 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 1990, 2518, 3319, 4176, 4299, 4919, 5282 |
| SmlI | CTYRAG | 5 cut(s) | 1758, 2856, 3949, 4022, 5449 |
| SmoI | CTYRAG | 5 cut(s) | 1758, 2856, 3949, 4022, 5449 |
| SnaBI | TACGTA | 1 cut(s) | 3032 |
| SpeI | ACTAGT | 1 cut(s) | 1142 |
| SphI | GCATGC | 2 cut(s) | 1606, 1928 |
| SseBI | AGGCCT | 1 cut(s) | 6221 |
| SspI | AATATT | 5 cut(s) | 2163, 5257, 5782, 6172, 6344 |
| SstI | GAGCTC | 1 cut(s) | 4098 |
| StuI | AGGCCT | 1 cut(s) | 6221 |
| StyI | CCWWGG | 5 cut(s) | 228, 4735, 5203, 5341, 5411 |
| SwaI | ATTTAAAT | 1 cut(s) | 2763 |
| TaiI | ACGT | 4 cut(s) | 3034, 3319, 3508, 6214 |
| TaqII | GACCGA | 1 cut(s) | 2815 |
| TatI | WGTACW | 8 cut(s) | 271, 1705, 3613, 3637, 3929, 4636, 5423, 5533 |
| TauI | GCSGC | 4 cut(s) | 1960, 2135, 2453, 6294 |
| TseFI | GTSAC | 5 cut(s) | 1745, 2077, 2341, 3398, 5899 |
| Tsp45I | GTSAC | 5 cut(s) | 1745, 2077, 2341, 3398, 5899 |
| TspGWI | ACGGA | 3 cut(s) | 1984, 2138, 3533 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1646 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1328, 5880 |
| VspI | ATTAAT | 2 cut(s) | 1988, 2895 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 3443, 5032, 5424 |
| XbaI | TCTAGA | 3 cut(s) | 1202, 1538, 2408 |
| XceI | RCATGY | 8 cut(s) | 842, 1606, 1787, 1820, 1928, 2035, 4637, 4684 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1571, 5914 |
| XhoI | CTCGAG | 3 cut(s) | 1758, 2856, 5449 |
| XmaJI | CCTAGG | 1 cut(s) | 5411 |
| XmiI | GTMKAC | 1 cut(s) | 1641 |
| XmnI | GAANNNNTTC | 5 cut(s) | 1198, 1336, 2049, 2300, 4062 |
| ZrmI | AGTACT | 1 cut(s) | 273 |
| Zsp2I | ATGCAT | 5 cut(s) | 776, 2629, 3099, 5026, 5120 |