Rroxscaffold_7G00156550

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0009462
Physical Location & Seq
Reverse (-)
370274 .. 386157
15884 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00156550.1

Sequence Viewer

Length: 6678 bp
ATGAGTGGACAACTCCATTGCCCATTTCTCGGGGTTCCGACTCACAGCTCTTTAAGTGGTAGAAACCATGGGAATTTGATTCATTGGGACACAAGGCATGTGGGAAGAAGGGTTGTCCGCAGGTGTGTGAGTGAAAAGCAAAATTATTGGATTACTCAAGCAATGCGAGTTTCACATTTTTGGGGGAAAAATGTGGAGTTATTAAAGAGAACCTTTGAGCTGAAAAATGGCAAGATACAATGTGTTAAAGAGCCTTTTTCTCAAAGCAAGGCTCTGGTGAGGTCTTTATCTCCTCTGTGGGAGGAGGGGTTACTTTTAGTTAGGTGCTCTATATTTGTTGCCGTGATATCTGGGGTATGCTTGTTGGTATGGTATGGGCAGAAAAAAGCCAAGGGTCTTATTGAAACCAGGGTTTTGCCTTCTGTTTGCTCAGTACTCAGTGAGTATATTCAGCGCGAAGTTGTTTTTGGTAAGGTTCGAAGGATATCACCTCTGAGCATCACATTGGAGGCGTGTTCAGTTGGCCCTCATAATGAGGAATTTTCTTGTGGTGAGGTCCCATCTATGAAACTTCTTTTTCGTCCTTTTGCAAGTCTGAGGAGGGGAAGGATTGTGATTGATGCAGTTTTATCCCATCCAACTGTATTGATTGCGCAGAAGAAGGATTATACATGGTTAGGGATACCCTCATCCGAAGGTAGTCTGCAGAGGCACTTATCAACAGAAGAAGGAATTGATCATCGTACAAAAATCCGGAGGCTAGCTAGAGAGGACGCAGCTGATCGCTGGGAAAGAGCAAGGGATGAAGCAGCTAGAAAAGCTGCGGAGATGGGTTACATTATTTCAGACAAGGGTTTCACTCCATCCAAAGGTGATGATTCAAAGGAAGGTGATAGCCATTCAGGGGATTTAACAACCTCTGAATCGTTTTTATGCATGGATGAAAAGATGCACTGGAGAGATCACTGCATGGACACAGGTGTCGATTATGATATCAAACATGCAGACTTGGAGAAATCATTGGGTGTAAAAATACCTGGTTCTGGGCTTAAATTTTGGTCCAGAGTGATAAAGGGACCTAAAAAGCACAAATTCAAAAGGAAGGGCAACAGGAATGATATTTCTGCATCTGGTTTTACTGCCAAAAGAAGAATTCTTGGGAATAGTGCAGTAAGGGCACTCGCATATTTTCAGGCTTTGGTGCATGGGAAGTCTGATGAACCTTCACAGGCATCCAGAAGTTATGATGTGATGAACCTTGACACCTATTTGATGAAGAATGAGGTTGCTAATAATGCCAACACTTGTGTCGCAGGTAGTGGTCGAGAAACTGTCAGAGTTGAAAACCGGAATGGAAAAGGTTCTAGAGATTCAGCAGACTTCGCCCTTAAAGAAAATCAGAATGCAAACATTCATTTAAGTAGTTTTAATCCCATACATGATCCATTAGATAGGTCCAATGTAGATGAGAAATCCAGTTACCCATCCACTGAAAATGTTTCAGAAACTAATACCAGTTGTAATGTAAAAGATGGGTATTTTGGAAATGATGTTAAAAATAATCATTCTGAGGATGGTGAATCAGAAAGGCAAGCAGGTGAAACATTGCAGAATTCAACTTCCATGATACCCCCTTTTGCAACATATGATCATGTTCCCACCTGGCCCCTAAGTCAGAAATTAGGGATTCCCTCTTTTTCTAGAAATGCTGGAGTTCCCATATCCCATCTTCTCTCTGGTCTCATTCAAAAGCTGACATCTAGCATGCGCCCCAGAGTTGAAGATATTGTTGCAGAACTTGTCGACGAGGTCAATATTGTGCAGCCTGAAGGCATTGAGAAGATGCTTCCAGTTACACTGGATTCTGTACAATTCAAAGGAGGAACACTCATGCTACTTGCATACGGTGACAGGGAACCTCGAGAGATGGAGAATGCCAATGGACATGTGAAGTTTCAAAATCACTATGGTCGCGTGCATGTGCAAGTCAATGGCAACTGTAAGATGTGGAGGTCTGACATCATGTCTGAAGATGGTGGCTGGTTGTCTGCAGATGTATTTGTTGACATTGTTGAACAGAAATGGCATGCGAACCTAAAAGTTGCTAACCTTTTTGCTCCGCTTTTTGAACGGATTTTAGAAATTCCATTAATGTGGTCCAAAGGAAGAGCCACTGGTGAGGTTCACTTGTGCATGTCAAGAGGAGAATCATTTCCCAATCTTCATGGACAGCTTGATGTGACAGGGTTGGCATTTCAAACAATTGATGCTCCATCATCATTTTCTGACATCTCGGCAAGCTTATGTTTCCGTGGCCAGCGAATATTCTTACACAATGCAAGTGGCTGGTTTGGTGATGTTCCTTTGGAAGCGTCTGGAGATTTTGGTATTCATCCCGAGGAAGGAGAGTTTCATCTTATGTGTCAGGTTTCTTGCGTGGAAGTAAATGCCTTGATGAAAACCTTCAAGATGAAGCCTCTTATGTTTCCGGCTGCAAATTACATGTTAGCTCTTCTTCTCCCTGAATCCTTCCTCCATGCATGGACGCTGGCTGGTTCAGTGACTGCAGTGTTTAACTGTCAAGGTCCATTGGATGCTCCTATATTTGTGGGAAGTGGAATGGTATCTAGAAGGATGACCCAGTCAGTTTCTGATTTTCCTCCATCTGCCGCAGCAGAAGCAGTTTTGAAAAGTAAGGAAGCTGGTGCTGTGGCAGCGTTTGATCGTGTACCATTTTCATGCGTGTCTGCCAATTTCACTTTCAACACTGATAGCTGTGTCGCTGACTTGTATGGAATTAGAGCTAGTCTTGTCGATGGCGGTGAAATTCGAGGGGCTGGGAATGCATGGATTTGCCCAGAGGGTGAGGTTGATGATACATCAATGGATGTGAATTTCTCCGGAAGTATGTGCTTTGATAAAATTCTGCATCGATATATTCCTGGGAGGTTTGACATTAAATGGACAGCTCCAAAAGCTGAAGGGTCCTTCAGCGATGCTCGAGGAGATATCATAATAGCGCATGATTCCATTACTATTAATTCCTCATCTACTGCCTTTGACTTGTCCTCAAAAGTTCTAACATCTTACAAGGATAAAGATTGGCTAAACAAAAGAGATGCTGACACAAAGAGTGCCATGCCATTTGTTGTTGAGGGAATCGACTTGGATTTACGTATGCGTGGTTTTGAGTTTTTCAGCTTGGTATCTTCTTATCCCTTTGATTCTCCGAAACCCATGCATTTGAAAGCAACAGGGAAGATCAAGTTTCAGGGAAAGGTTTTAAAGCCTTTTAGTATTTCTAATGGACAAGAATTTGGTTCCGAGAGAAATAAGCAACAGGTGAATATGACAGATACAGGAAAGACAGATAGTCTCGTAGGAGAGGTTTCAATTTCGGGTCTCAAATTGAATCAGTTGATGTTGGCCCCTCAGTTGGCTGGATCGTTGAGCATTTCACGTGAGTGTATCAAGTTAGATGCCACAGGTAGGCCAGATGAAAGTCTTGTAGTGGAGTTTGTAGGGCCACTGAAGCCTAACAGTGAAACTAACACACAAAGTGGACAATTGTTGTCTTTCTTCCTTCAAAAGGGCCAACTAAAAGCAAACATTTGCTTCCAACCATTTCATTCTGCTAGCTTGGAGATACGTCAGTTACCACTCGATGAGTTGGAATTAGCTTCGCTCCGTGGAACAATACAAAAGGTAAGCCAGCAGCCTCCTGTGTTTATTATTTTCTGTTTCCCCTTTCTCCCCCTTCTGTTCCTCTCTGGTGCACATTTGGTTATTGACCTTATTTGCATGGCTGATTTAACCATCTCGTTTATAACATTGTCTTTGACCATCACTTCAAGGGACTTCTCAGAGGCAGAAATTCAGCTTAATCTTCAGAAACGAAGAGGTCATGGGCTGCTATCTGTACTTCGGCCAAAGTTTAGCGGTGTACTAGGTGAAGCCCTTGATGTGGCTGCTAGATGGAGTGGGGATGTTATCACTGTTGAGAAAACCGTCTTGGAGCAAAGCAATAGTCGTTATGAGCTTCAGGGTGAATATGTATTGCCTGGCAGTCGAGATCGCAACCCTGCTGAGAAGGAAAGGGGAGGTTTATTGAAAAGAGCGATGGCTGGGAATCTGGGTAGTGTCATATCTTCTATGGGAAGGTGGAGAATGAGACTGGAAGTTCCTAGAGCTGAGGTTGCTGAGATGCTTCCCCTTGCCAGACTTGTTTCTCGAAGTACAGATCCTGCTGTTCACTCAAGATCAAAGGTTGACCTGTTTGTTCAAAGCTTGCAGTCGGTTGGATTATATACAGAAAGTCTCAAAGAACTGCTTGAGGTTATACGGGGACATTATACCCCATTAAATGAAGTTATTCTGGAAGATGATCTTCCAGGTTTAACTGAGCTCAGAGGTAGCTGGCATGGCTCTCTTGATGCAAGCGGAGGTGGCAATGGGGACACAATGGCAGAATTTGATTTTCATGGGGATGACTGGGAGTGGGGAACCTACAAAACTCAGCGTGTTCTGGCAGTAGGTGCATACAGCAATGATGATGGTTTGCGCCTGGAAAAGATCTTTATTCAGAAAGACAATGCCACAGTCCATGCAGATGGGACTTTGTTAGGGCCGAAAACAAATCTACACTTCGCTGTTTTGAACTTTCCTGTTAGTCTAGTTCCCACTGTGATTCAGGTCATTGAATCTTCTGCTACTGATGCTGTTCAATCTCTACGGCAATTTTTAGCACCAATTAGAGGCATACTGCACATGGAAGGCGATCTTAGAGGGAGTCTTGCGAAACCAGAATGTGATGTGCAAGTAAGGCTCCTGGATGGTGCCGTTGGGGGCATTGATCTTGGACGAGCTGAAATTGTTGCTTCCCTCACCTCAACCAGTCGTTTTCTGTTCAATGCAAAATTTGAACCAATCATCCAAACTGGGCATGTACACATTCAGGGAAGCATACCTGTTACTTTTGTTCAGAATAACATGTTAGAGGAAGAAAATTTAGAAAAAGATAAAAGCCGAGCTACTTCCTGGGACCATGGTTGGGTGAAGGAAAGAGGCAGGGGGTCTAGCGATGATGCCAGTGAAAAGAAACTTCCAAGAGAGAGGAATGAAGAAGGCTGGGATACGGGATTAGCTGAAAGCCTTAAAGGTTTAAACTGGAACATATTAGATGTAGGGGAAGTCAGAATAGATGCTGATATAAAAGATGGGGGCATGATGATGTTAACTGCTTTATCTCCTTATGCTAAATGGCTTCAGGGCAATGCCGACATCATGCTTCAGGTCAGAGGCACAGTTGAACAACCAGTGCTGGATGGATATGCATCCTTCCACAGGGCATCTATATCATCACCGGTTCTCTGGAAACCACTCACAAATTTCGGTGGCACAGTTCATGTGAAATCAAATAGGTTATGCATCACTTCATTGGAAAGTAGAGTAAGTAGAAGGGGTAAGCTGTTTGTCAAGGGAAACCTGCCCCTTAGAACAAGTGAAGCATCCCTTGGAGATAAAATTGACTTGAAATGTGAAGTTCTGGAAGTGCGGGCAAAAAATATTTTAAGTGCCCAGGTTGACACTCAGATGCAAATAACTGGTTCCATATTGCAACCAGACATCTCTGGAAGTATTAAATTGAGCCATGGTGAAGCATATTTGCCACACGATAAGGGTAGTGGGGCTGCCCCGAATAGATTGGCAACAAATGAACCTAGGCTTCCTAGTACAGGTGTTGATCGAGCAGTTGCCTCGAGATATGTTTCACGGTTTTTCAGTTCACAACCTGCTGCTTCATGGACAAAATTTCCTCAACCTTCAGTAGCGGTTAAGCAAGCAGTACAGGAGATGGAGCAAGTGAACATTAAACCAAATGTAGATATTCAACTTAGTGATTTGAAGCTTGTTCTAGGACCAGAGCTGAGGATTGTATATCCTTTAATTCTAAATTTTGCTGTTAGTGGAGAGCTAGAGTTAAATGGTCCAGCTCATCCCAAATCGATAAAACCTAGAGGCATCTTAACTTTTGAAAATGGGGATGTCAATCTTGTTGCTACTCAGGTGAGGCTCAGGCAAGAGCATCTGAATATTGCAAAGTTTGAGCCTGAACATGGATTAGATCCAATGCTAGATCTAGTTTTAGTGGGGTCTGAGTGGCAATTCAGGATTCAAAGTCGAGCCAGCAACTGGCAGGAAAAACTGGTTGTGACCTCCACCCGTTCTGTGGAACAGGACGCTCTCTCACCTACTGAGGCTGCTAGAGTCTTTGAAAGTCAATTGGCAGAGTCCATCTTGGAAGGTGATGGGCAGCTTGCATTTCAAAAGCTTGCAACTACAACACTTGAAAAACTAATGCCGAGGATAGAAGGGAAGGGAGAGTTTGGTCAGGCAAGGTGGAGGCTAGTGTATGCACCACAGATCCCTAGCTTGCTTTCTGTTGATCCTACTGTGGATCCTCTCAAATCCCTGGCCAGTAATATTTCATTTGGTACAGAAGTTGAAGTCCAACTAGGAAAACATCTTCAGGCCTCAATTGTTCGACAAATGAAGGACTCGGAAATGGCAATGCAATGGACATTGATCTACCAGCTTACCAGCCGCCTGCGTGTTCTGCTACAGTCTGCTCCTTCAAAACGCCTCATTTTTGAATATTCTGCAACATCTCAGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TamB

Protein Analysis

2225

Amino Acids

246.11

Weight (kDa)

6.47

Isoelectric Point (pI)

38.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TamB PF04357 1813 - 2062 1.2e-14 TamB C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 3827
AarI CACCTGC 2 cut(s) 111, 1586
AasI GACNNNNNNGTC 1 cut(s) 980
Acc16I TGCGCA 1 cut(s) 654
Acc36I ACCTGC 5 cut(s) 111, 1304, 1586, 5493, 5800
AccB1I GGYRCC 1 cut(s) 4835
AccB7I CCANNNNNTGG 1 cut(s) 6192
AccI GTMKAC 1 cut(s) 1803
AccII CGCG 2 cut(s) 456, 1974
AccIII TCCGGA 2 cut(s) 753, 2900
AclWI GGATC 8 cut(s) 1436, 3451, 4235, 6119, 6418, 6440, 6452, 6465
AcoI YGGCCR 3 cut(s) 2314, 3926, 6474
AcvI CACGTG 1 cut(s) 3461
AdeI CACNNNGTG 1 cut(s) 3560
AflIII ACRYGT 3 cut(s) 1945, 2502, 4989
AgeI ACCGGT 1 cut(s) 5362
AhdI GACNNNNNGTC 2 cut(s) 2023, 3372
AjuI GAANNNNNNNTTGG 8 cut(s) 450, 482, 2744, 2776, 3995, 4027, 5496, 5528
AleI CACNNNNGTG 1 cut(s) 3463
AloI GAACNNNNNNTCC 2 cut(s) 4914, 4946
Alw21I GWGCWC 3 cut(s) 329, 3778, 4407
Alw26I GTCTC 5 cut(s) 1745, 3380, 3407, 4165, 4322
Alw44I GTGCAC 1 cut(s) 3774
AlwI GGATC 8 cut(s) 1436, 3451, 4235, 6119, 6418, 6440, 6452, 6465
AlwNI CAGNNNCTG 4 cut(s) 2564, 2651, 4244, 6192
Ama87I CYCGRG 5 cut(s) 29, 1920, 2396, 3000, 5758
Aor13HI TCCGGA 2 cut(s) 753, 2900
ApaLI GTGCAC 1 cut(s) 3774
ArsI GACNNNNNNTTYG 2 cut(s) 4012, 4044
AseI ATTAAT 2 cut(s) 2150, 3039
AsiGI ACCGGT 1 cut(s) 5362
Asp700I GAANNNNTTC 4 cut(s) 1360, 2211, 2462, 4371
AspA2I CCTAGG 1 cut(s) 5720
AspLEI GCGC 5 cut(s) 456, 655, 1770, 3022, 4563
AsuII TTCGAA 1 cut(s) 478
AsuNHI GCTAGC 2 cut(s) 760, 3635
AvaI CYCGRG 5 cut(s) 29, 1920, 2396, 3000, 5758
AvrII CCTAGG 1 cut(s) 5720
BaeGI GKGCMC 3 cut(s) 1180, 3778, 5578
BaeI ACNNNNGTAYC 4 cut(s) 3638, 3671, 6486, 6519
BalI TGGCCA 2 cut(s) 2316, 6476
BamHI GGATCC 1 cut(s) 6457
BanI GGYRCC 1 cut(s) 4835
BanII GRGCYC 1 cut(s) 4407
BbrPI CACGTG 1 cut(s) 3461
Bbv12I GWGCWC 3 cut(s) 329, 3778, 4407
BbvCI CCTCAGC 2 cut(s) 4191, 5927
BceAI ACGGC 3 cut(s) 326, 4748, 4823
BcgI CGANNNNNNTGC 4 cut(s) 3220, 3254, 5739, 5773
BciVI GTATCC 2 cut(s) 675, 5125
BclI TGATCA 2 cut(s) 736, 1648
BcoDI GTCTC 5 cut(s) 1745, 3380, 3407, 4165, 4322
BfmI CTRYAG 4 cut(s) 704, 2049, 2565, 6620
BfuAI ACCTGC 5 cut(s) 111, 1304, 1586, 5493, 5800
BfuI GTATCC 2 cut(s) 675, 5125
BglII AGATCT 2 cut(s) 4572, 6136
BlnI CCTAGG 1 cut(s) 5720
BmcAI AGTACT 1 cut(s) 435
BmeRI GACNNNNNGTC 2 cut(s) 2023, 3372
BmeT110I CYCGRG 5 cut(s) 29, 1920, 2396, 3000, 5758
BmrI ACTGGG 3 cut(s) 2635, 4501, 4947
BmtI GCTAGC 2 cut(s) 764, 3639
BmuI ACTGGG 3 cut(s) 2635, 4501, 4947
BplI GAGNNNNNCTC 2 cut(s) 1872, 1904
BpmI CTGGAG 3 cut(s) 976, 1731, 2397
Bpu10I CCTNAGC 3 cut(s) 4191, 5927, 6074
Bpu14I TTCGAA 1 cut(s) 478
BpuEI CTTGAG 3 cut(s) 141, 4240, 4352
Bsa29I ATCGAT 2 cut(s) 2932, 6005
BsaAI YACGTR 2 cut(s) 3176, 3461
BsaBI GATNNNNATC 2 cut(s) 5332, 6048
BsaI GGTCTC 2 cut(s) 1745, 3407
BsaWI WCCGGW 4 cut(s) 753, 1347, 2900, 5362
BsaXI ACNNNNNCTCC 2 cut(s) 293, 323
Bse118I RCCGGY 1 cut(s) 5362
Bse3DI GCAATG 8 cut(s) 16, 168, 1604, 4456, 4552, 5278, 6576, 6581
Bse8I GATNNNNATC 2 cut(s) 5332, 6048
BseAI TCCGGA 2 cut(s) 753, 2900
BseCI ATCGAT 2 cut(s) 2932, 6005
BseJI GATNNNNATC 2 cut(s) 5332, 6048
BseMI GCAATG 8 cut(s) 16, 168, 1604, 4456, 4552, 5278, 6576, 6581
BseRI GAGGAG 5 cut(s) 282, 317, 613, 2217, 3018
BseSI GKGCMC 3 cut(s) 1180, 3778, 5578
BseYI CCCAGC 4 cut(s) 786, 2837, 4124, 5127
BsgI GTGCAG 3 cut(s) 1188, 1841, 4748
Bsh1236I CGCG 2 cut(s) 456, 1974
BshNI GGYRCC 1 cut(s) 4835
BshTI ACCGGT 1 cut(s) 5362
BshVI ATCGAT 2 cut(s) 2932, 6005
BsiHKAI GWGCWC 3 cut(s) 329, 3778, 4407
BsiHKCI CYCGRG 5 cut(s) 29, 1920, 2396, 3000, 5758
BsiSI CCGG 5 cut(s) 754, 1348, 2489, 2901, 5363
BslFI GGGAC 8 cut(s) 101, 542, 1089, 3869, 4359, 4469, 4627, 5054
BsmAI GTCTC 5 cut(s) 1745, 3380, 3407, 4165, 4322
BsmFI GGGAC 8 cut(s) 101, 542, 1089, 3869, 4359, 4469, 4627, 5054
BsmI GAATGC 3 cut(s) 1408, 1939, 2848
Bso31I GGTCTC 2 cut(s) 1745, 3407
BsoBI CYCGRG 5 cut(s) 29, 1920, 2396, 3000, 5758
Bsp119I TTCGAA 1 cut(s) 478
Bsp1286I GDGCHC 5 cut(s) 329, 1180, 3778, 4407, 5578
Bsp13I TCCGGA 2 cut(s) 753, 2900
Bsp1407I TGTACA 2 cut(s) 1867, 4945
Bsp19I CCATGG 3 cut(s) 67, 5044, 5650
BspDI ATCGAT 2 cut(s) 2932, 6005
BspEI TCCGGA 2 cut(s) 753, 2900
BspFNI CGCG 2 cut(s) 456, 1974
BspMAI CTGCAG 3 cut(s) 708, 2053, 2569
BspMI ACCTGC 5 cut(s) 111, 1304, 1586, 5493, 5800
BspOI GCTAGC 2 cut(s) 764, 3639
BspPI GGATC 8 cut(s) 1436, 3451, 4235, 6119, 6418, 6440, 6452, 6465
BspQI GCTCTTC 2 cut(s) 2161, 2517
BspT104I TTCGAA 1 cut(s) 478
BspT107I GGYRCC 1 cut(s) 4835
BspTNI GGTCTC 2 cut(s) 1745, 3407
BsrDI GCAATG 8 cut(s) 16, 168, 1604, 4456, 4552, 5278, 6576, 6581
BsrFI RCCGGY 1 cut(s) 5362
BsrGI TGTACA 2 cut(s) 1867, 4945
BssAI RCCGGY 1 cut(s) 5362
BssT1I CCWWGG 6 cut(s) 67, 390, 5044, 5512, 5650, 5720
Bst6I CTCTTC 3 cut(s) 2161, 2517, 3892
BstAPI GCANNNNNTGC 1 cut(s) 4535
BstAUI TGTACA 2 cut(s) 1867, 4945
BstBAI YACGTR 2 cut(s) 3176, 3461
BstBI TTCGAA 1 cut(s) 478
BstDSI CCRYGG 5 cut(s) 67, 2311, 3688, 5044, 5650
BstENI CCTNNNNNAGG 3 cut(s) 3587, 5341, 5733
BstFNI CGCG 2 cut(s) 456, 1974
BstHHI GCGC 5 cut(s) 456, 655, 1770, 3022, 4563
BstMAI GTCTC 5 cut(s) 1745, 3380, 3407, 4165, 4322
BstSFI CTRYAG 4 cut(s) 704, 2049, 2565, 6620
BstSLI GKGCMC 3 cut(s) 1180, 3778, 5578
BstSNI TACGTA 1 cut(s) 3176
BstUI CGCG 2 cut(s) 456, 1974
BstX2I RGATCY 6 cut(s) 4240, 4572, 6124, 6136, 6423, 6457
BstXI CCANNNNNNTGG 2 cut(s) 2154, 4610
BstYI RGATCY 6 cut(s) 4240, 4572, 6124, 6136, 6423, 6457
Bsu15I ATCGAT 2 cut(s) 2932, 6005
BsuI GTATCC 2 cut(s) 675, 5125
BsuTUI ATCGAT 2 cut(s) 2932, 6005
BtgI CCRYGG 5 cut(s) 67, 2311, 3688, 5044, 5650
BtgZI GCGATG 3 cut(s) 3009, 4133, 5094
BtsI GCAGTG 2 cut(s) 964, 2574
BveI ACCTGC 5 cut(s) 111, 1304, 1586, 5493, 5800
CaiI CAGNNNCTG 4 cut(s) 2564, 2651, 4244, 6192
CfoI GCGC 5 cut(s) 456, 655, 1770, 3022, 4563
Cfr10I RCCGGY 1 cut(s) 5362
ClaI ATCGAT 2 cut(s) 2932, 6005
CseI GACGC 4 cut(s) 782, 2361, 2554, 6248
CsiI ACCWGGT 1 cut(s) 1036
CspAI ACCGGT 1 cut(s) 5362
CspCI CAANNNNNGTGG 4 cut(s) 81, 116, 2323, 2358
DraI TTTAAA 2 cut(s) 3285, 5163
DraIII CACNNNGTG 1 cut(s) 3560
DrdI GACNNNNNNGTC 1 cut(s) 980
DriI GACNNNNNGTC 2 cut(s) 2023, 3372
DseDI GACNNNNNNGTC 1 cut(s) 980
EaeI YGGCCR 3 cut(s) 2314, 3926, 6474
Eam1104I CTCTTC 3 cut(s) 2161, 2517, 3892
Eam1105I GACNNNNNGTC 2 cut(s) 2023, 3372
EarI CTCTTC 3 cut(s) 2161, 2517, 3892
Ecl136II GAGCTC 1 cut(s) 4405
Eco105I TACGTA 1 cut(s) 3176
Eco130I CCWWGG 6 cut(s) 67, 390, 5044, 5512, 5650, 5720
Eco147I AGGCCT 1 cut(s) 6533
Eco24I GRGCYC 1 cut(s) 4407
Eco31I GGTCTC 2 cut(s) 1745, 3407
Eco32I GATATC 4 cut(s) 348, 486, 994, 3010
Eco53kI GAGCTC 1 cut(s) 4405
Eco72I CACGTG 1 cut(s) 3461
Eco88I CYCGRG 5 cut(s) 29, 1920, 2396, 3000, 5758
EcoICRI GAGCTC 1 cut(s) 4405
EcoNI CCTNNNNNAGG 3 cut(s) 3587, 5341, 5733
EcoO109I RGGNCCY 3 cut(s) 556, 1076, 2985
EcoRI GAATTC 2 cut(s) 1152, 1612
EcoRV GATATC 4 cut(s) 348, 486, 994, 3010
EcoT14I CCWWGG 6 cut(s) 67, 390, 5044, 5512, 5650, 5720
EcoT22I ATGCAT 6 cut(s) 938, 2542, 2848, 3243, 5335, 5429
EcoT38I GRGCYC 1 cut(s) 4407
ErhI CCWWGG 6 cut(s) 67, 390, 5044, 5512, 5650, 5720
FaqI GGGAC 8 cut(s) 101, 542, 1089, 3869, 4359, 4469, 4627, 5054
FauI CCCGC 1 cut(s) 5547
FauNDI CATATG 1 cut(s) 1645
FbaI TGATCA 2 cut(s) 736, 1648
FblI GTMKAC 1 cut(s) 1803
FriOI GRGCYC 1 cut(s) 4407
FspI TGCGCA 1 cut(s) 654
GlaI GCGC 5 cut(s) 455, 654, 1769, 3021, 4562
GsaI CCCAGC 4 cut(s) 790, 2841, 4128, 5131
GsuI CTGGAG 3 cut(s) 976, 1731, 2397
HapII CCGG 5 cut(s) 754, 1348, 2489, 2901, 5363
HgaI GACGC 4 cut(s) 782, 2361, 2554, 6248
HhaI GCGC 5 cut(s) 456, 655, 1770, 3022, 4563
Hin6I GCGC 5 cut(s) 454, 653, 1768, 3020, 4561
HinP1I GCGC 5 cut(s) 454, 653, 1768, 3020, 4561
HincII GTYRAC 5 cut(s) 1804, 2065, 4270, 5235, 5584
HindII GTYRAC 5 cut(s) 1804, 2065, 4270, 5235, 5584
HindIII AAGCTT 4 cut(s) 2299, 4285, 5906, 6329
HpaI GTTAAC 1 cut(s) 5235
HpaII CCGG 5 cut(s) 754, 1348, 2489, 2901, 5363
Hpy99I CGWCG 1 cut(s) 1808
HpyCH4IV ACGT 3 cut(s) 3175, 3460, 3649
HpySE526I ACGT 3 cut(s) 3175, 3460, 3649
HspAI GCGC 5 cut(s) 454, 653, 1768, 3020, 4561
Kpn2I TCCGGA 2 cut(s) 753, 2900
Ksp22I TGATCA 2 cut(s) 736, 1648
KspAI GTTAAC 1 cut(s) 5235
LguI GCTCTTC 2 cut(s) 2161, 2517
LmnI GCTCC 9 cut(s) 2122, 2275, 2602, 2974, 3690, 4015, 4830, 5857, 6634
MabI ACCWGGT 1 cut(s) 1036
MaeII ACGT 3 cut(s) 3175, 3460, 3649
MfeI CAATTG 4 cut(s) 2262, 3566, 6281, 6537
MflI RGATCY 6 cut(s) 4240, 4572, 6124, 6136, 6423, 6457
MhlI GDGCHC 5 cut(s) 329, 1180, 3778, 4407, 5578
MlsI TGGCCA 2 cut(s) 2316, 6476
MluNI TGGCCA 2 cut(s) 2316, 6476
MlyI GAGTC 5 cut(s) 34, 4798, 6276, 6299, 6551
MmeI TCCRAC 6 cut(s) 62, 662, 3643, 3651, 4279, 6535
Mox20I TGGCCA 2 cut(s) 2316, 6476
Mph1103I ATGCAT 6 cut(s) 938, 2542, 2848, 3243, 5335, 5429
MroI TCCGGA 2 cut(s) 753, 2900
MroXI GAANNNNTTC 4 cut(s) 1360, 2211, 2462, 4371
MscI TGGCCA 2 cut(s) 2316, 6476
MslI CAYNNNNRTG 7 cut(s) 2152, 2737, 3463, 4485, 4608, 5228, 5591
Msp20I TGGCCA 2 cut(s) 2316, 6476
MspA1I CMGCKG 1 cut(s) 779
MspI CCGG 5 cut(s) 754, 1348, 2489, 2901, 5363
MssI GTTTAAAC 1 cut(s) 5163
MunI CAATTG 4 cut(s) 2262, 3566, 6281, 6537
Mva1269I GAATGC 3 cut(s) 1408, 1939, 2848
MvnI CGCG 2 cut(s) 456, 1974
NcoI CCATGG 3 cut(s) 67, 5044, 5650
NdeI CATATG 1 cut(s) 1645
NheI GCTAGC 2 cut(s) 760, 3635
NmeAIII GCCGAG 3 cut(s) 2273, 5051, 6387
NmuCI GTSAC 4 cut(s) 1907, 2239, 2560, 6211
NsbI TGCGCA 1 cut(s) 654
NsiI ATGCAT 6 cut(s) 938, 2542, 2848, 3243, 5335, 5429
NspV TTCGAA 1 cut(s) 478
OliI CACNNNNGTG 1 cut(s) 3463
PaeI GCATGC 2 cut(s) 1768, 2090
PaeR7I CTCGAG 3 cut(s) 1920, 3000, 5758
PaqCI CACCTGC 2 cut(s) 111, 1586
PceI AGGCCT 1 cut(s) 6533
PciI ACATGT 3 cut(s) 1945, 2502, 4989
PciSI GCTCTTC 2 cut(s) 2161, 2517
PctI GAATGC 3 cut(s) 1408, 1939, 2848
PdmI GAANNNNTTC 4 cut(s) 1360, 2211, 2462, 4371
PflFI GACNNNGTC 2 cut(s) 1808, 2641
PflMI CCANNNNNTGG 1 cut(s) 6192
PfoI TCCNGGA 1 cut(s) 4827
PinAI ACCGGT 1 cut(s) 5362
PleI GAGTC 5 cut(s) 34, 4797, 6275, 6298, 6551
PmaCI CACGTG 1 cut(s) 3461
PmeI GTTTAAAC 1 cut(s) 5163
PmlI CACGTG 1 cut(s) 3461
PpsI GAGTC 5 cut(s) 34, 4797, 6275, 6298, 6551
Ppu21I YACGTR 2 cut(s) 3176, 3461
PpuMI RGGWCCY 3 cut(s) 556, 1076, 2985
PscI ACATGT 3 cut(s) 1945, 2502, 4989
PshBI ATTAAT 2 cut(s) 2150, 3039
PsiI TTATAA 1 cut(s) 3827
Psp124BI GAGCTC 1 cut(s) 4407
Psp5II RGGWCCY 3 cut(s) 556, 1076, 2985
PspCI CACGTG 1 cut(s) 3461
PspFI CCCAGC 4 cut(s) 786, 2837, 4124, 5127
PspPPI RGGWCCY 3 cut(s) 556, 1076, 2985
PspXI VCTCGAGB 1 cut(s) 3000
PstI CTGCAG 3 cut(s) 708, 2053, 2569
PstNI CAGNNNCTG 4 cut(s) 2564, 2651, 4244, 6192
PsuI RGATCY 6 cut(s) 4240, 4572, 6124, 6136, 6423, 6457
PsyI GACNNNGTC 2 cut(s) 1808, 2641
PvuII CAGCTG 1 cut(s) 779
RseI CAYNNNNRTG 7 cut(s) 2152, 2737, 3463, 4485, 4608, 5228, 5591
SacI GAGCTC 1 cut(s) 4407
SalI GTCGAC 1 cut(s) 1802
SapI GCTCTTC 2 cut(s) 2161, 2517
ScaI AGTACT 1 cut(s) 435
SchI GAGTC 5 cut(s) 34, 4798, 6276, 6299, 6551
SduI GDGCHC 5 cut(s) 329, 1180, 3778, 4407, 5578
SexAI ACCWGGT 1 cut(s) 1036
SfcI CTRYAG 4 cut(s) 704, 2049, 2565, 6620
Sfr274I CTCGAG 3 cut(s) 1920, 3000, 5758
SfuI TTCGAA 1 cut(s) 478
SlaI CTCGAG 3 cut(s) 1920, 3000, 5758
SmiMI CAYNNNNRTG 7 cut(s) 2152, 2737, 3463, 4485, 4608, 5228, 5591
SmlI CTYRAG 6 cut(s) 156, 1920, 3000, 4255, 4331, 5758
SmoI CTYRAG 6 cut(s) 156, 1920, 3000, 4255, 4331, 5758
SnaBI TACGTA 1 cut(s) 3176
SphI GCATGC 2 cut(s) 1768, 2090
SseBI AGGCCT 1 cut(s) 6533
SspI AATATT 6 cut(s) 1816, 2325, 5566, 6094, 6484, 6656
SstI GAGCTC 1 cut(s) 4407
StuI AGGCCT 1 cut(s) 6533
StyI CCWWGG 6 cut(s) 67, 390, 5044, 5512, 5650, 5720
TaiI ACGT 3 cut(s) 3178, 3463, 3652
TatI WGTACW 8 cut(s) 433, 1867, 3919, 3943, 4235, 4945, 5732, 5845
TauI GCSGC 2 cut(s) 2672, 6606
TseFI GTSAC 4 cut(s) 1907, 2239, 2560, 6211
Tsp45I GTSAC 4 cut(s) 1907, 2239, 2560, 6211
TspGWI ACGGA 3 cut(s) 2146, 2300, 3677
Tth111I GACNNNGTC 2 cut(s) 1808, 2641
Van91I CCANNNNNTGG 1 cut(s) 6192
VneI GTGCAC 1 cut(s) 3774
VspI ATTAAT 2 cut(s) 2150, 3039
XagI CCTNNNNNAGG 3 cut(s) 3587, 5341, 5733
XbaI TCTAGA 3 cut(s) 1364, 1700, 2627
XcmI CCANNNNNNNNNTGG 2 cut(s) 1733, 6226
XhoI CTCGAG 3 cut(s) 1920, 3000, 5758
XmaJI CCTAGG 1 cut(s) 5720
XmiI GTMKAC 1 cut(s) 1803
XmnI GAANNNNTTC 4 cut(s) 1360, 2211, 2462, 4371
ZrmI AGTACT 1 cut(s) 435
Zsp2I ATGCAT 6 cut(s) 938, 2542, 2848, 3243, 5335, 5429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.