Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0008824

Physical Location & Seq

Genomic Coordinates Reverse (-)

12200655 .. 12201443

Gene Structure 789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1161900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGACTGGTTCTCATGGCTGTCAAAAACCGGCCTTGAACCCTCCCTCATCTACGAATACGGCCTCGACTTTTCGCACAACCAGCTGCAGCTCGACGACGTGAGATACTTAGACCACGAGTTTCTTCAGAGCATGGGAATATCTGTGGCCAAGCACAGGCTAGAAATACTCAAGCTTGCCAAGAAAGAAACCGGATTTGGACACCCGAAATCGCTTTCTCGGCTTAGTTGGGCGCTCATTCGGACCAAGAAGTGCTTCTCCAAGTACTTTAACAAGTTCGTTTTTCATGAGGACGGCAAGGGTGCAACTCAGACCGAGCCAACTCGGTATCAAGAGCATTGGAGAGGAGCTTTGTTGAGGAAGCACAAGAGTTATTCTGAGGAGGTCAAGGATGAGAACCCTATGTTGGTCAAAACTAGGAGCATTGCGCTTTCTGGACCGTTGGATGGGAGGGTCCAGGAGAGATTGATGGCTCATAATAATCGGAGCTTGAAGCTATCGGGACCGTTGGATAGGAAGGTTCATGAGACGTTGATGTACACAAATAGGAGCCCAAGGCTGACCAGTTCTTTGGTTGCAAGTCCGAGTCCCAAGTTATCTGGACCGTTGGATGGAAGAACGTACGAGATGATCATGGCTACAAATAAAAGTCCAAGACTTTCTGGGCCGTTGGATGGGAGAGTTGTGAGCCCAAAGTTTTGCTTTCCTTACAAGAAGGAAAGGGAGGATGTTGATTATGATGATCATTCACTTCGGACTGCACTGTTTCAGGATCTGAAGCCAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAM_2

Protein Analysis

263

Amino Acids

30.23

Weight (kDa)

9.47

Isoelectric Point (pI)

37.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008824)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01970
malus_domestica	MD02G1018000.v1.1 MD15G1161900.v1.1
prunus_persica	Prupe.7G257100_v2.0.a1
pyrus_communis	pycom02g01600 pycom15g14550
rosa_chinensis	RchiOBHm_Chr2g0087001
rosa_laevigata	RLG00000002278 RLG00000015821
rosa_multiflora	Rmu_sc0010698.1_g000001 Rmu_sc0029090.1_g000001 Rmu_sc0030653.1_g000001
rosa_roxburghii	Rroxscaffold_2G00153970
rosa_rugosa	Rorug01G0471400 Rorug07G0186800
rosa_samantha	Rh2AG024200 Rh2BG024700 Rh2CG024800 Rh2DG024700 Rh7AG330800 Rh7BG320500
rosa_wichuraiana	Rw2G001900 Rw2G001950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	780
AcoI	YGGCCR	1 cut(s)	147
AcuI	CTGAAG	1 cut(s)	110
AfaI	GTAC	3 cut(s)	266, 539, 623
AfiI	CCNNNNNNNGG	5 cut(s)	156, 406, 446, 611, 674
AgsI	TTSAA	2 cut(s)	38, 493
AjiI	CACGTC	1 cut(s)	100
AjnI	CCWGG	1 cut(s)	456
AjuI	GAANNNNNNNTTGG	6 cut(s)	180, 212, 239, 271, 389, 421
AluBI	AGCT	6 cut(s)	85, 91, 175, 350, 489, 496
AluI	AGCT	6 cut(s)	85, 91, 175, 350, 489, 496
Alw26I	GTCTC	1 cut(s)	521
AlwI	GGATC	1 cut(s)	780
AlwNI	CAGNNNCTG	1 cut(s)	775
AoxI	GGCC	4 cut(s)	31, 61, 147, 665
ApeKI	GCWGC	2 cut(s)	85, 88
ArsI	GACNNNNNNTTYG	2 cut(s)	553, 585
Asp700I	GAANNNNTTC	1 cut(s)	254
AspLEI	GCGC	2 cut(s)	235, 430
AspS9I	GGNCC	6 cut(s)	243, 437, 454, 503, 602, 665
AvaII	GGWCC	5 cut(s)	243, 437, 454, 503, 602
BalI	TGGCCA	1 cut(s)	149
BanII	GRGCYC	2 cut(s)	554, 692
BauI	CACGAG	1 cut(s)	116
BbvI	GCAGC	2 cut(s)	72, 100
BccI	CCATC	4 cut(s)	440, 463, 605, 668
BceAI	ACGGC	3 cut(s)	76, 310, 652
BciT130I	CCWGG	1 cut(s)	458
BclI	TGATCA	2 cut(s)	630, 742
BcoDI	GTCTC	1 cut(s)	521
BfaI	CTAG	2 cut(s)	161, 417
BfmI	CTRYAG	1 cut(s)	86
BfoI	RGCGCY	1 cut(s)	236
BisI	GCNGC	2 cut(s)	86, 89
BlsI	GCNGC	2 cut(s)	87, 90
BmcAI	AGTACT	1 cut(s)	266
Bme1390I	CCNGG	1 cut(s)	458
Bme18I	GGWCC	5 cut(s)	243, 437, 454, 503, 602
BmgBI	CACGTC	1 cut(s)	100
BmgT120I	GGNCC	6 cut(s)	243, 437, 454, 503, 602, 665
BmiI	GGNNCC	3 cut(s)	455, 504, 551
BmrFI	CCNGG	1 cut(s)	458
BpuEI	CTTGAG	1 cut(s)	155
BsaJI	CCNNGG	1 cut(s)	554
BsaWI	WCCGGW	1 cut(s)	191
Bsc4I	CCNNNNNNNGG	5 cut(s)	156, 406, 446, 611, 674
Bse118I	RCCGGY	1 cut(s)	29
Bse1I	ACTGG	2 cut(s)	11, 564
Bse3DI	GCAATG	1 cut(s)	423
BseBI	CCWGG	1 cut(s)	458
BseDI	CCNNGG	1 cut(s)	554
BseGI	GGATG	5 cut(s)	397, 451, 616, 679, 733
BseLI	CCNNNNNNNGG	5 cut(s)	156, 406, 446, 611, 674
BseMI	GCAATG	1 cut(s)	423
BseMII	CTCAG	2 cut(s)	323, 369
BseNI	ACTGG	2 cut(s)	11, 564
BseRI	GAGGAG	2 cut(s)	360, 395
BseXI	GCAGC	2 cut(s)	72, 100
BsgI	GTGCAG	1 cut(s)	744
BshFI	GGCC	4 cut(s)	33, 63, 149, 667
BsiSI	CCGG	2 cut(s)	30, 192
BsiWI	CGTACG	1 cut(s)	621
BslFI	GGGAC	2 cut(s)	516, 573
BslI	CCNNNNNNNGG	5 cut(s)	156, 406, 446, 611, 674
BsmAI	GTCTC	1 cut(s)	521
BsmBI	CGTCTC	1 cut(s)	521
BsmFI	GGGAC	2 cut(s)	516, 573
BsnI	GGCC	4 cut(s)	33, 63, 149, 667
Bsp1286I	GDGCHC	2 cut(s)	554, 692
Bsp1407I	TGTACA	1 cut(s)	537
Bsp143I	GATC	3 cut(s)	630, 742, 772
BspANI	GGCC	4 cut(s)	33, 63, 149, 667
BspCNI	CTCAG	2 cut(s)	322, 370
BspHI	TCATGA	2 cut(s)	286, 523
BspLI	GGNNCC	3 cut(s)	455, 504, 551
BspMAI	CTGCAG	1 cut(s)	90
BspPI	GGATC	1 cut(s)	780
BsrDI	GCAATG	1 cut(s)	423
BsrFI	RCCGGY	1 cut(s)	29
BsrGI	TGTACA	1 cut(s)	537
BsrI	ACTGG	2 cut(s)	11, 564
BssAI	RCCGGY	1 cut(s)	29
BssECI	CCNNGG	1 cut(s)	554
BssMI	GATC	3 cut(s)	630, 742, 772
BssSI	CACGAG	1 cut(s)	116
BssT1I	CCWWGG	1 cut(s)	554
Bst2BI	CACGAG	1 cut(s)	116
Bst2UI	CCWGG	1 cut(s)	458
Bst4CI	ACNGT	4 cut(s)	441, 507, 606, 765
BstAUI	TGTACA	1 cut(s)	537
BstC8I	GCNNGC	1 cut(s)	177
BstDEI	CTNAG	4 cut(s)	109, 224, 309, 378
BstF5I	GGATG	5 cut(s)	397, 451, 616, 679, 733
BstH2I	RGCGCY	1 cut(s)	236
BstHHI	GCGC	2 cut(s)	235, 430
BstKTI	GATC	3 cut(s)	633, 745, 775
BstMAI	GTCTC	1 cut(s)	521
BstMBI	GATC	3 cut(s)	630, 742, 772
BstMWI	GCNNNNNNNGC	2 cut(s)	82, 220
BstNI	CCWGG	1 cut(s)	458
BstSCI	CCNGG	1 cut(s)	456
BstSFI	CTRYAG	1 cut(s)	86
BstV1I	GCAGC	2 cut(s)	72, 100
BstX2I	RGATCY	1 cut(s)	772
BstXI	CCANNNNNNTGG	1 cut(s)	571
BstYI	RGATCY	1 cut(s)	772
BsuRI	GGCC	4 cut(s)	33, 63, 149, 667
BtrI	CACGTC	1 cut(s)	100
BtsCI	GGATG	5 cut(s)	397, 451, 616, 679, 733
BtsIMutI	CAGTG	1 cut(s)	761
Cac8I	GCNNGC	1 cut(s)	177
CaiI	CAGNNNCTG	1 cut(s)	775
CciI	TCATGA	2 cut(s)	286, 523
CfoI	GCGC	2 cut(s)	235, 430
Cfr10I	RCCGGY	1 cut(s)	29
Cfr13I	GGNCC	6 cut(s)	243, 437, 454, 503, 602, 665
Csp6I	GTAC	3 cut(s)	265, 538, 622
CviAII	CATG	5 cut(s)	15, 133, 287, 524, 634
CviQI	GTAC	3 cut(s)	265, 538, 622
DdeI	CTNAG	4 cut(s)	109, 224, 309, 378
DpnI	GATC	3 cut(s)	632, 744, 774
DpnII	GATC	3 cut(s)	630, 742, 772
EaeI	YGGCCR	1 cut(s)	147
Eco130I	CCWWGG	1 cut(s)	554
Eco24I	GRGCYC	2 cut(s)	554, 692
Eco47I	GGWCC	5 cut(s)	243, 437, 454, 503, 602
Eco57I	CTGAAG	1 cut(s)	110
EcoRII	CCWGG	1 cut(s)	456
EcoT14I	CCWWGG	1 cut(s)	554
EcoT38I	GRGCYC	2 cut(s)	554, 692
ErhI	CCWWGG	1 cut(s)	554
Esp3I	CGTCTC	1 cut(s)	521
FaeI	CATG	5 cut(s)	18, 136, 290, 527, 637
FaiI	YATR	8 cut(s)	16, 134, 288, 404, 477, 525, 635, 738
FalI	AAGNNNNNCTT	4 cut(s)	239, 271, 686, 718
FaqI	GGGAC	2 cut(s)	516, 573
FatI	CATG	5 cut(s)	14, 132, 286, 523, 633
FbaI	TGATCA	2 cut(s)	630, 742
Fnu4HI	GCNGC	2 cut(s)	86, 89
FokI	GGATG	5 cut(s)	404, 458, 623, 686, 740
FriOI	GRGCYC	2 cut(s)	554, 692
Fsp4HI	GCNGC	2 cut(s)	86, 89
FspBI	CTAG	2 cut(s)	161, 417
GlaI	GCGC	2 cut(s)	234, 429
GluI	GCNGC	2 cut(s)	86, 89
HaeII	RGCGCY	1 cut(s)	236
HaeIII	GGCC	4 cut(s)	33, 63, 149, 667
HapII	CCGG	2 cut(s)	30, 192
HhaI	GCGC	2 cut(s)	235, 430
Hin1II	CATG	5 cut(s)	18, 136, 290, 527, 637
Hin6I	GCGC	2 cut(s)	233, 428
HinP1I	GCGC	2 cut(s)	233, 428
HindIII	AAGCTT	1 cut(s)	173
HinfI	GANTC	1 cut(s)	586
HpaII	CCGG	2 cut(s)	30, 192
Hpy166II	GTNNAC	1 cut(s)	540
Hpy188I	TCNGA	8 cut(s)	129, 243, 312, 379, 486, 585, 756, 777
Hpy188III	TCNNGA	7 cut(s)	287, 332, 435, 501, 524, 600, 770
Hpy8I	GTNNAC	1 cut(s)	540
Hpy99I	CGWCG	2 cut(s)	98, 101
HpyAV	CCTTC	2 cut(s)	511, 709
HpyCH4III	ACNGT	4 cut(s)	441, 507, 606, 765
HpyCH4IV	ACGT	3 cut(s)	99, 530, 620
HpyCH4V	TGCA	4 cut(s)	88, 305, 578, 761
HpyF10VI	GCNNNNNNNGC	2 cut(s)	82, 220
HpyF3I	CTNAG	4 cut(s)	109, 224, 309, 378
HpySE526I	ACGT	3 cut(s)	99, 530, 620
Hsp92II	CATG	5 cut(s)	18, 136, 290, 527, 637
HspAI	GCGC	2 cut(s)	233, 428
Ksp22I	TGATCA	2 cut(s)	630, 742
Kzo9I	GATC	3 cut(s)	630, 742, 772
LmnI	GCTCC	4 cut(s)	347, 420, 486, 549
Lsp1109I	GCAGC	2 cut(s)	72, 100
MaeI	CTAG	2 cut(s)	161, 417
MaeII	ACGT	3 cut(s)	99, 530, 620
MalI	GATC	3 cut(s)	632, 744, 774
MboI	GATC	3 cut(s)	630, 742, 772
MboII	GAAGA	2 cut(s)	116, 627
MflI	RGATCY	1 cut(s)	772
MhlI	GDGCHC	2 cut(s)	554, 692
MlsI	TGGCCA	1 cut(s)	149
MluNI	TGGCCA	1 cut(s)	149
MlyI	GAGTC	1 cut(s)	595
MmeI	TCCRAC	4 cut(s)	423, 489, 588, 651
Mox20I	TGGCCA	1 cut(s)	149
MroXI	GAANNNNTTC	1 cut(s)	254
MscI	TGGCCA	1 cut(s)	149
MseI	TTAA	1 cut(s)	270
Msp20I	TGGCCA	1 cut(s)	149
MspA1I	CMGCKG	1 cut(s)	85
MspI	CCGG	2 cut(s)	30, 192
MspR9I	CCNGG	1 cut(s)	458
MvaI	CCWGG	1 cut(s)	458
MwoI	GCNNNNNNNGC	2 cut(s)	82, 220
NdeII	GATC	3 cut(s)	630, 742, 772
NlaIII	CATG	5 cut(s)	18, 136, 290, 527, 637
NlaIV	GGNNCC	3 cut(s)	455, 504, 551
NmeAIII	GCCGAG	1 cut(s)	199
PagI	TCATGA	2 cut(s)	286, 523
PdmI	GAANNNNTTC	1 cut(s)	254
Pfl23II	CGTACG	1 cut(s)	621
PfoI	TCCNGGA	1 cut(s)	456
PkrI	GCNGC	2 cut(s)	87, 90
PleI	GAGTC	1 cut(s)	594
PpsI	GAGTC	1 cut(s)	594
Psp6I	CCWGG	1 cut(s)	456
PspGI	CCWGG	1 cut(s)	456
PspLI	CGTACG	1 cut(s)	621
PspN4I	GGNNCC	3 cut(s)	455, 504, 551
PspPI	GGNCC	6 cut(s)	243, 437, 454, 503, 602, 665
PstI	CTGCAG	1 cut(s)	90
PstNI	CAGNNNCTG	1 cut(s)	775
PsuI	RGATCY	1 cut(s)	772
PvuII	CAGCTG	1 cut(s)	85
RsaI	GTAC	3 cut(s)	266, 539, 623
RsaNI	GTAC	3 cut(s)	265, 538, 622
SaqAI	TTAA	1 cut(s)	270
SatI	GCNGC	2 cut(s)	86, 89
Sau3AI	GATC	3 cut(s)	630, 742, 772
Sau96I	GGNCC	6 cut(s)	243, 437, 454, 503, 602, 665
ScaI	AGTACT	1 cut(s)	266
SchI	GAGTC	1 cut(s)	595
ScrFI	CCNGG	1 cut(s)	458
SduI	GDGCHC	2 cut(s)	554, 692
SfcI	CTRYAG	1 cut(s)	86
SinI	GGWCC	5 cut(s)	243, 437, 454, 503, 602
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
SspMI	CTAG	2 cut(s)	161, 417
StyD4I	CCNGG	1 cut(s)	456
StyI	CCWWGG	1 cut(s)	554
TaaI	ACNGT	4 cut(s)	441, 507, 606, 765
TaiI	ACGT	3 cut(s)	102, 533, 623
TaqI	TCGA	2 cut(s)	66, 93
TaqII	GACCGA	1 cut(s)	329
TatI	WGTACW	2 cut(s)	264, 537
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TscAI	CASTG	1 cut(s)	768
TseI	GCWGC	2 cut(s)	85, 88
TspDTI	ATGAA	2 cut(s)	275, 512
TspRI	CASTG	1 cut(s)	768
VpaK11BI	GGWCC	5 cut(s)	243, 437, 454, 503, 602
XmnI	GAANNNNTTC	1 cut(s)	254
XspI	CTAG	2 cut(s)	161, 417
ZrmI	AGTACT	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.