Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0008824

Physical Location & Seq

Genomic Coordinates Reverse (-)

1661287 .. 1662644

Gene Structure 1358 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG024700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGACTGGTTCGCATGGCTGTCGAAAACCGGCCTTGAACCAAGCCTTGTCTATGAGTACGGCATCATCTTCTCTCGCAACGAGCTTCAAATGGAGGACGTTGCTTTCTTCAACCATGAGTTCCTGCTGAGCATGGGAGTTTCTGTGGCCAAGCACAGGCTAGAGATACTCAAGCTTGCCAAGAAGGAAAACGAGGGTGGCGGTGGTGGTCACCGCCACCACCCAGGGTCAATTTCAAGGCTCGGCTGGGCGCTCATCAAAACCAAGAAGTGTTTCAGCAAGTACTTTACAAGATTGACTTTCCAAGAGAACGACATGTCATCGTCCCCCAGGCATGTAGCTGATCAGCCAGAGAAGTATCAAGAGCATTGGAGAGGAAGTCTGCTGAGGAAGCCAAAGGGTCATGAGGAGGTCAAAACTCGGAGCATTGCGCTATCGGGGCCGTTGGATATGAGGACTCATGAGAGGTTGATGATGGTCCCTAACCCTAGGAGCTTGAAGCTATCAGGACCCTTAGACTCAAAGGTCAATGAGAGGCTCATGTACACAGCAAATAGGAGCCCTAGGCTCACTTCAGGTCCTATGGTGACCGACAAGCTAATGGTTGCAGCAAATAGGAGCCCCAAGGCATCCGGACCGTACGATGGACGATCATATGATCGGCTGATGGTGACGAAGAATAGGAGCCCGAGGCTGTCCGGACCGCTTGATGGAAAAGTCACTCCATATGAGAAGGAAAGGGTGGACGTTGATTTTGATGACCATTCACTTTGGACTGCTATGTTTCAGGATATGAAACCCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAM_2

Protein Analysis

268

Amino Acids

30.67

Weight (kDa)

9.59

Isoelectric Point (pI)

38.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008824)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01970
malus_domestica	MD02G1018000.v1.1 MD15G1161900.v1.1
prunus_persica	Prupe.7G257100_v2.0.a1
pyrus_communis	pycom02g01600 pycom15g14550
rosa_chinensis	RchiOBHm_Chr2g0087001
rosa_laevigata	RLG00000002278 RLG00000015821
rosa_multiflora	Rmu_sc0010698.1_g000001 Rmu_sc0029090.1_g000001 Rmu_sc0030653.1_g000001
rosa_roxburghii	Rroxscaffold_2G00153970
rosa_rugosa	Rorug01G0471400 Rorug07G0186800
rosa_samantha	Rh2AG024200 Rh2BG024700 Rh2CG024800 Rh2DG024700 Rh7AG330800 Rh7BG320500
rosa_wichuraiana	Rw2G001900 Rw2G001950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	524
AccIII	TCCGGA	2 cut(s)	632, 698
AciI	CCGC	3 cut(s)	201, 214, 704
AcoI	YGGCCR	1 cut(s)	147
AcuI	CTGAAG	1 cut(s)	558
AfaI	GTAC	4 cut(s)	59, 284, 545, 641
AfiI	CCNNNNNNNGG	3 cut(s)	156, 644, 710
AflIII	ACRYGT	1 cut(s)	315
AgsI	TTSAA	5 cut(s)	38, 89, 112, 237, 499
AjnI	CCWGG	2 cut(s)	223, 329
AjuI	GAANNNNNNNTTGG	2 cut(s)	257, 289
AluBI	AGCT	6 cut(s)	85, 175, 341, 495, 502, 598
AluI	AGCT	6 cut(s)	85, 175, 341, 495, 502, 598
Ama87I	CYCGRG	1 cut(s)	688
Aor13HI	TCCGGA	2 cut(s)	632, 698
AoxI	GGCC	3 cut(s)	31, 147, 440
ApeKI	GCWGC	1 cut(s)	608
ArsI	GACNNNNNNTTYG	2 cut(s)	737, 769
Asp700I	GAANNNNTTC	1 cut(s)	272
AspA2I	CCTAGG	2 cut(s)	488, 563
AspLEI	GCGC	2 cut(s)	253, 433
AspS9I	GGNCC	6 cut(s)	440, 478, 509, 578, 635, 701
AsuHPI	GGTGA	3 cut(s)	203, 598, 682
AvaI	CYCGRG	1 cut(s)	688
AvaII	GGWCC	5 cut(s)	478, 509, 578, 635, 701
AvrII	CCTAGG	2 cut(s)	488, 563
BalI	TGGCCA	1 cut(s)	149
BanII	GRGCYC	3 cut(s)	563, 623, 689
BbvCI	CCTCAGC	1 cut(s)	386
BbvI	GCAGC	1 cut(s)	620
BccI	CCATC	4 cut(s)	469, 638, 661, 704
BceAI	ACGGC	2 cut(s)	76, 427
BcgI	CGANNNNNNTGC	1 cut(s)	37
BciT130I	CCWGG	2 cut(s)	225, 331
BclI	TGATCA	1 cut(s)	343
BfaI	CTAG	3 cut(s)	161, 489, 564
BfoI	RGCGCY	1 cut(s)	254
BisI	GCNGC	1 cut(s)	609
BlnI	CCTAGG	2 cut(s)	488, 563
BlpI	GCTNAGC	1 cut(s)	128
BlsI	GCNGC	1 cut(s)	610
BmcAI	AGTACT	1 cut(s)	284
Bme1390I	CCNGG	2 cut(s)	225, 331
Bme18I	GGWCC	5 cut(s)	478, 509, 578, 635, 701
BmeT110I	CYCGRG	1 cut(s)	688
BmgT120I	GGNCC	6 cut(s)	440, 478, 509, 578, 635, 701
BmiI	GGNNCC	6 cut(s)	441, 480, 511, 560, 620, 686
BmrFI	CCNGG	2 cut(s)	225, 331
BmsI	GCATC	2 cut(s)	72, 638
Bpu10I	CCTNAGC	1 cut(s)	386
Bpu1102I	GCTNAGC	1 cut(s)	128
BpuEI	CTTGAG	1 cut(s)	155
BsaJI	CCNNGG	7 cut(s)	223, 224, 329, 488, 563, 624, 689
BsaWI	WCCGGW	2 cut(s)	632, 698
BsaXI	ACNNNNNCTCC	4 cut(s)	129, 159, 364, 394
Bsc4I	CCNNNNNNNGG	3 cut(s)	156, 644, 710
Bse118I	RCCGGY	1 cut(s)	29
Bse1I	ACTGG	1 cut(s)	11
Bse3DI	GCAATG	1 cut(s)	426
BseAI	TCCGGA	2 cut(s)	632, 698
BseBI	CCWGG	2 cut(s)	225, 331
BseDI	CCNNGG	7 cut(s)	223, 224, 329, 488, 563, 624, 689
BseGI	GGATG	1 cut(s)	629
BseLI	CCNNNNNNNGG	3 cut(s)	156, 644, 710
BseMI	GCAATG	1 cut(s)	426
BseMII	CTCAG	2 cut(s)	119, 377
BseNI	ACTGG	1 cut(s)	11
BseRI	GAGGAG	1 cut(s)	422
BseXI	GCAGC	1 cut(s)	620
BseYI	CCCAGC	1 cut(s)	246
BshFI	GGCC	3 cut(s)	33, 149, 442
BsiHKCI	CYCGRG	1 cut(s)	688
BsiSI	CCGG	3 cut(s)	30, 633, 699
BsiWI	CGTACG	1 cut(s)	639
BslFI	GGGAC	2 cut(s)	310, 464
BslI	CCNNNNNNNGG	3 cut(s)	156, 644, 710
BsmFI	GGGAC	2 cut(s)	310, 464
BsnI	GGCC	3 cut(s)	33, 149, 442
BsoBI	CYCGRG	1 cut(s)	688
Bsp1286I	GDGCHC	3 cut(s)	563, 623, 689
Bsp13I	TCCGGA	2 cut(s)	632, 698
Bsp1407I	TGTACA	1 cut(s)	543
Bsp143I	GATC	3 cut(s)	343, 650, 658
Bsp1720I	GCTNAGC	1 cut(s)	128
BspACI	CCGC	3 cut(s)	201, 214, 704
BspANI	GGCC	3 cut(s)	33, 149, 442
BspCNI	CTCAG	2 cut(s)	120, 378
BspEI	TCCGGA	2 cut(s)	632, 698
BspHI	TCATGA	2 cut(s)	403, 460
BspLI	GGNNCC	6 cut(s)	441, 480, 511, 560, 620, 686
BsrDI	GCAATG	1 cut(s)	426
BsrFI	RCCGGY	1 cut(s)	29
BsrGI	TGTACA	1 cut(s)	543
BsrI	ACTGG	1 cut(s)	11
BssAI	RCCGGY	1 cut(s)	29
BssECI	CCNNGG	7 cut(s)	223, 224, 329, 488, 563, 624, 689
BssMI	GATC	3 cut(s)	343, 650, 658
BssT1I	CCWWGG	3 cut(s)	488, 563, 624
Bst2UI	CCWGG	2 cut(s)	225, 331
Bst4CI	ACNGT	1 cut(s)	639
BstAUI	TGTACA	1 cut(s)	543
BstC8I	GCNNGC	1 cut(s)	177
BstDEI	CTNAG	3 cut(s)	128, 386, 514
BstEII	GGTNACC	2 cut(s)	209, 586
BstF5I	GGATG	1 cut(s)	629
BstH2I	RGCGCY	1 cut(s)	254
BstHHI	GCGC	2 cut(s)	253, 433
BstKTI	GATC	3 cut(s)	346, 653, 661
BstMBI	GATC	3 cut(s)	343, 650, 658
BstMWI	GCNNNNNNNGC	2 cut(s)	391, 439
BstNI	CCWGG	2 cut(s)	225, 331
BstNSI	RCATGY	2 cut(s)	319, 338
BstPI	GGTNACC	2 cut(s)	209, 586
BstSCI	CCNGG	2 cut(s)	223, 329
BstV1I	GCAGC	1 cut(s)	620
BsuRI	GGCC	3 cut(s)	33, 149, 442
BtsCI	GGATG	1 cut(s)	629
Cac8I	GCNNGC	1 cut(s)	177
CciI	TCATGA	2 cut(s)	403, 460
CfoI	GCGC	2 cut(s)	253, 433
Cfr10I	RCCGGY	1 cut(s)	29
Cfr13I	GGNCC	6 cut(s)	440, 478, 509, 578, 635, 701
CpoI	CGGWCCG	2 cut(s)	635, 701
Csp6I	GTAC	4 cut(s)	58, 283, 544, 640
CspI	CGGWCCG	2 cut(s)	635, 701
CviAII	CATG	8 cut(s)	15, 116, 133, 316, 335, 404, 461, 541
CviQI	GTAC	4 cut(s)	58, 283, 544, 640
DdeI	CTNAG	3 cut(s)	128, 386, 514
DpnI	GATC	3 cut(s)	345, 652, 660
DpnII	GATC	3 cut(s)	343, 650, 658
DrdI	GACNNNNNNGTC	1 cut(s)	524
DseDI	GACNNNNNNGTC	1 cut(s)	524
EaeI	YGGCCR	1 cut(s)	147
Eco130I	CCWWGG	3 cut(s)	488, 563, 624
Eco24I	GRGCYC	3 cut(s)	563, 623, 689
Eco47I	GGWCC	5 cut(s)	478, 509, 578, 635, 701
Eco57I	CTGAAG	1 cut(s)	558
Eco88I	CYCGRG	1 cut(s)	688
Eco91I	GGTNACC	2 cut(s)	209, 586
EcoO109I	RGGNCCY	2 cut(s)	509, 578
EcoO65I	GGTNACC	2 cut(s)	209, 586
EcoRII	CCWGG	2 cut(s)	223, 329
EcoT14I	CCWWGG	3 cut(s)	488, 563, 624
EcoT38I	GRGCYC	3 cut(s)	563, 623, 689
ErhI	CCWWGG	3 cut(s)	488, 563, 624
FaeI	CATG	8 cut(s)	18, 119, 136, 319, 338, 407, 464, 544
FalI	AAGNNNNNCTT	2 cut(s)	283, 315
FaqI	GGGAC	2 cut(s)	310, 464
FatI	CATG	8 cut(s)	14, 115, 132, 315, 334, 403, 460, 540
FauNDI	CATATG	2 cut(s)	655, 727
FbaI	TGATCA	1 cut(s)	343
Fnu4HI	GCNGC	1 cut(s)	609
FokI	GGATG	1 cut(s)	616
FriOI	GRGCYC	3 cut(s)	563, 623, 689
Fsp4HI	GCNGC	1 cut(s)	609
FspBI	CTAG	3 cut(s)	161, 489, 564
GlaI	GCGC	2 cut(s)	252, 432
GluI	GCNGC	1 cut(s)	609
GsaI	CCCAGC	1 cut(s)	250
HaeII	RGCGCY	1 cut(s)	254
HaeIII	GGCC	3 cut(s)	33, 149, 442
HapII	CCGG	3 cut(s)	30, 633, 699
HhaI	GCGC	2 cut(s)	253, 433
Hin1II	CATG	8 cut(s)	18, 119, 136, 319, 338, 407, 464, 544
Hin6I	GCGC	2 cut(s)	251, 431
HinP1I	GCGC	2 cut(s)	251, 431
HindIII	AAGCTT	1 cut(s)	173
HinfI	GANTC	2 cut(s)	457, 518
HpaII	CCGG	3 cut(s)	30, 633, 699
HphI	GGTGA	3 cut(s)	203, 598, 682
Hpy166II	GTNNAC	2 cut(s)	546, 745
Hpy188I	TCNGA	1 cut(s)	423
Hpy188III	TCNNGA	7 cut(s)	362, 404, 461, 507, 633, 699, 788
Hpy8I	GTNNAC	2 cut(s)	546, 745
HpyAV	CCTTC	2 cut(s)	178, 727
HpyCH4III	ACNGT	1 cut(s)	639
HpyCH4IV	ACGT	2 cut(s)	99, 747
HpyCH4V	TGCA	1 cut(s)	608
HpyF10VI	GCNNNNNNNGC	2 cut(s)	391, 439
HpyF3I	CTNAG	3 cut(s)	128, 386, 514
HpySE526I	ACGT	2 cut(s)	99, 747
Hsp92II	CATG	8 cut(s)	18, 119, 136, 319, 338, 407, 464, 544
HspAI	GCGC	2 cut(s)	251, 431
Kpn2I	TCCGGA	2 cut(s)	632, 698
Ksp22I	TGATCA	1 cut(s)	343
Kzo9I	GATC	3 cut(s)	343, 650, 658
LmnI	GCTCC	5 cut(s)	423, 492, 558, 618, 684
Lsp1109I	GCAGC	1 cut(s)	620
LweI	GCATC	2 cut(s)	72, 638
MaeI	CTAG	3 cut(s)	161, 489, 564
MaeII	ACGT	2 cut(s)	99, 747
MaeIII	GTNAC	4 cut(s)	209, 586, 670, 718
MalI	GATC	3 cut(s)	345, 652, 660
MboI	GATC	3 cut(s)	343, 650, 658
MboII	GAAGA	3 cut(s)	61, 100, 688
MhlI	GDGCHC	3 cut(s)	563, 623, 689
MlsI	TGGCCA	1 cut(s)	149
MluCI	AATT	1 cut(s)	231
MluNI	TGGCCA	1 cut(s)	149
MlyI	GAGTC	2 cut(s)	451, 512
MmeI	TCCRAC	1 cut(s)	426
Mox20I	TGGCCA	1 cut(s)	149
MroI	TCCGGA	2 cut(s)	632, 698
MroXI	GAANNNNTTC	1 cut(s)	272
MscI	TGGCCA	1 cut(s)	149
Msp20I	TGGCCA	1 cut(s)	149
MspI	CCGG	3 cut(s)	30, 633, 699
MspR9I	CCNGG	2 cut(s)	225, 331
MvaI	CCWGG	2 cut(s)	225, 331
MwoI	GCNNNNNNNGC	2 cut(s)	391, 439
NdeI	CATATG	2 cut(s)	655, 727
NdeII	GATC	3 cut(s)	343, 650, 658
NlaIII	CATG	8 cut(s)	18, 119, 136, 319, 338, 407, 464, 544
NlaIV	GGNNCC	6 cut(s)	441, 480, 511, 560, 620, 686
NmeAIII	GCCGAG	1 cut(s)	222
NmuCI	GTSAC	4 cut(s)	209, 586, 670, 718
NspI	RCATGY	2 cut(s)	319, 338
PagI	TCATGA	2 cut(s)	403, 460
PasI	CCCWGGG	1 cut(s)	224
PciI	ACATGT	1 cut(s)	315
PdmI	GAANNNNTTC	1 cut(s)	272
Pfl23II	CGTACG	1 cut(s)	639
PkrI	GCNGC	1 cut(s)	610
PleI	GAGTC	2 cut(s)	451, 512
PpsI	GAGTC	2 cut(s)	451, 512
PpuMI	RGGWCCY	2 cut(s)	509, 578
PscI	ACATGT	1 cut(s)	315
Psp5II	RGGWCCY	2 cut(s)	509, 578
Psp6I	CCWGG	2 cut(s)	223, 329
PspEI	GGTNACC	2 cut(s)	209, 586
PspFI	CCCAGC	1 cut(s)	246
PspGI	CCWGG	2 cut(s)	223, 329
PspLI	CGTACG	1 cut(s)	639
PspN4I	GGNNCC	6 cut(s)	441, 480, 511, 560, 620, 686
PspPI	GGNCC	6 cut(s)	440, 478, 509, 578, 635, 701
PspPPI	RGGWCCY	2 cut(s)	509, 578
RsaI	GTAC	4 cut(s)	59, 284, 545, 641
RsaNI	GTAC	4 cut(s)	58, 283, 544, 640
Rsr2I	CGGWCCG	2 cut(s)	635, 701
RsrII	CGGWCCG	2 cut(s)	635, 701
SatI	GCNGC	1 cut(s)	609
Sau3AI	GATC	3 cut(s)	343, 650, 658
Sau96I	GGNCC	6 cut(s)	440, 478, 509, 578, 635, 701
ScaI	AGTACT	1 cut(s)	284
SchI	GAGTC	2 cut(s)	451, 512
ScrFI	CCNGG	2 cut(s)	225, 331
SduI	GDGCHC	3 cut(s)	563, 623, 689
SfaNI	GCATC	2 cut(s)	72, 638
SinI	GGWCC	5 cut(s)	478, 509, 578, 635, 701
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
Sse9I	AATT	1 cut(s)	231
SsiI	CCGC	3 cut(s)	201, 214, 704
SspMI	CTAG	3 cut(s)	161, 489, 564
StyD4I	CCNGG	2 cut(s)	223, 329
StyI	CCWWGG	3 cut(s)	488, 563, 624
TaaI	ACNGT	1 cut(s)	639
TaiI	ACGT	2 cut(s)	102, 750
TaqI	TCGA	1 cut(s)	23
TaqII	GACCGA	1 cut(s)	605
TasI	AATT	1 cut(s)	231
TatI	WGTACW	2 cut(s)	282, 543
TseFI	GTSAC	4 cut(s)	209, 586, 670, 718
TseI	GCWGC	1 cut(s)	608
Tsp45I	GTSAC	4 cut(s)	209, 586, 670, 718
VpaK11BI	GGWCC	5 cut(s)	478, 509, 578, 635, 701
XceI	RCATGY	2 cut(s)	319, 338
XmaJI	CCTAGG	2 cut(s)	488, 563
XmnI	GAANNNNTTC	1 cut(s)	272
XspI	CTAG	3 cut(s)	161, 489, 564
ZrmI	AGTACT	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.