Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0008824

Physical Location & Seq

Genomic Coordinates Reverse (-)

21509659 .. 21510519

Gene Structure 861 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G257100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGACTGGTTCTCATGGCTGTCAAAAACTGGTCTTGATCCATCGCTTATCTACGAGTATGGCCTCGCCTTCTCTCGCAACGAGCTGCAATTCGAGGACGTGAGTTACTTCGACCATGAGTTTCTGCAGAGCATGGGGATTTCTGTGGCCAAACACAGGCTAGAGATACTCAAGCTTGCCAAGAAGGAGAGGAGTGGATTAGGAGGCCACCCAAGGTCGCTTTCAACGCTAAGCTGGGCGCTTATCAGAACCAAGAAGTGCTTCAGCAAGTACTTTAACAAGTGGGTTTTTCACGAGGACCTGTCTCTTAAGGATGCGGGTGAGGGGGCAGCTAGGTATCAAGACCATTGGAGAGGAGCTTTGTTGAGGAAACACAAGGCCACTGTCAATGGGGAGGTGAAGGAAGAGAAGCCAGTAATGTTCAAAACTAGAAGCATGGCGCTTTCTGGACCTTTGGATGGGAGAGTCCAAGAGAGATTGATGGCCAATAATAATAATAATAATAATAATCATAGGAGCTTGAAGCTATCTGGGCCGTTGGATGGGAAGGTTCATGAGAGGTTGATGTATACAAATAGAAGCCCAAGACTTACAGGTCCTTCGGATGTGAATGGAAGGGCACCAGAGAGGCTGTTGGTTGAAACTACTAGGAGCCCTAAGTTGTCTGGGCCTTTGCAGGGAAGAACACATGAGAGGCTCATGGTCTCAAACAAAAGTCCAAGGCTGTCTGGTCCTCTGGATGGAAGACTTGTTGTGAGCCCAAATTTTTGCACTCCATATGAGAAGGAAAGGGTTGACGATGTTGATTACGATGATCATTCACTTTGGACTGCACTGTTTCAGGATATGAAACCCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAM_2

Protein Analysis

287

Amino Acids

32.73

Weight (kDa)

9.46

Isoelectric Point (pI)

36.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008824)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01970
malus_domestica	MD02G1018000.v1.1 MD15G1161900.v1.1
prunus_persica	Prupe.7G257100_v2.0.a1
pyrus_communis	pycom02g01600 pycom15g14550
rosa_chinensis	RchiOBHm_Chr2g0087001
rosa_laevigata	RLG00000002278 RLG00000015821
rosa_multiflora	Rmu_sc0010698.1_g000001 Rmu_sc0029090.1_g000001 Rmu_sc0030653.1_g000001
rosa_roxburghii	Rroxscaffold_2G00153970
rosa_rugosa	Rorug01G0471400 Rorug07G0186800
rosa_samantha	Rh2AG024200 Rh2BG024700 Rh2CG024800 Rh2DG024700 Rh7AG330800 Rh7BG320500
rosa_wichuraiana	Rw2G001900 Rw2G001950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	594
AccB1I	GGYRCC	1 cut(s)	619
AccI	GTMKAC	1 cut(s)	569
AciI	CCGC	1 cut(s)	317
AclWI	GGATC	1 cut(s)	32
AcoI	YGGCCR	2 cut(s)	147, 483
AcsI	RAATTY	1 cut(s)	763
AcuI	CTGAAG	1 cut(s)	247
AfaI	GTAC	1 cut(s)	272
AfiI	CCNNNNNNNGG	5 cut(s)	156, 458, 542, 677, 740
AflII	CTTAAG	1 cut(s)	308
AgsI	TTSAA	4 cut(s)	225, 424, 523, 641
AjiI	CACGTC	1 cut(s)	100
AjuI	GAANNNNNNNTTGG	4 cut(s)	205, 237, 245, 277
AluBI	AGCT	7 cut(s)	85, 175, 234, 332, 359, 519, 526
AluI	AGCT	7 cut(s)	85, 175, 234, 332, 359, 519, 526
Alw26I	GTCTC	2 cut(s)	309, 709
AlwI	GGATC	1 cut(s)	32
AoxI	GGCC	7 cut(s)	61, 147, 205, 378, 483, 533, 668
ApeKI	GCWGC	2 cut(s)	85, 329
ApoI	RAATTY	1 cut(s)	763
Asp700I	GAANNNNTTC	1 cut(s)	260
AspLEI	GCGC	2 cut(s)	241, 442
AspS9I	GGNCC	6 cut(s)	298, 449, 533, 596, 668, 731
AsuHPI	GGTGA	2 cut(s)	332, 409
AvaII	GGWCC	4 cut(s)	298, 449, 596, 731
BaeGI	GKGCMC	1 cut(s)	622
BalI	TGGCCA	2 cut(s)	149, 485
BanI	GGYRCC	1 cut(s)	619
BanII	GRGCYC	2 cut(s)	656, 761
BauI	CACGAG	1 cut(s)	293
BbsI	GAAGAC	1 cut(s)	751
BbvI	GCAGC	2 cut(s)	72, 341
BccI	CCATC	5 cut(s)	49, 452, 475, 536, 734
BceAI	ACGGC	1 cut(s)	520
BclI	TGATCA	1 cut(s)	814
BcoDI	GTCTC	2 cut(s)	309, 709
BfaI	CTAG	4 cut(s)	161, 333, 429, 648
BfmI	CTRYAG	1 cut(s)	125
BfoI	RGCGCY	2 cut(s)	242, 443
BfrI	CTTAAG	1 cut(s)	308
BisI	GCNGC	2 cut(s)	86, 330
BlpI	GCTNAGC	1 cut(s)	230
BlsI	GCNGC	2 cut(s)	87, 331
BmcAI	AGTACT	1 cut(s)	272
Bme18I	GGWCC	4 cut(s)	298, 449, 596, 731
BmgBI	CACGTC	1 cut(s)	100
BmgT120I	GGNCC	6 cut(s)	298, 449, 533, 596, 668, 731
BmiI	GGNNCC	2 cut(s)	621, 653
BmsI	GCATC	1 cut(s)	304
BpiI	GAAGAC	1 cut(s)	751
Bpu1102I	GCTNAGC	1 cut(s)	230
BpuEI	CTTGAG	1 cut(s)	155
BsaI	GGTCTC	1 cut(s)	709
BsaJI	CCNNGG	2 cut(s)	212, 719
Bsc4I	CCNNNNNNNGG	5 cut(s)	156, 458, 542, 677, 740
Bse1I	ACTGG	3 cut(s)	11, 34, 413
BseDI	CCNNGG	2 cut(s)	212, 719
BseGI	GGATG	5 cut(s)	319, 463, 547, 610, 745
BseLI	CCNNNNNNNGG	5 cut(s)	156, 458, 542, 677, 740
BseNI	ACTGG	3 cut(s)	11, 34, 413
BseRI	GAGGAG	2 cut(s)	205, 369
BseSI	GKGCMC	1 cut(s)	622
BseXI	GCAGC	2 cut(s)	72, 341
BseYI	CCCAGC	1 cut(s)	234
BsgI	GTGCAG	1 cut(s)	816
BshFI	GGCC	7 cut(s)	63, 149, 207, 380, 485, 535, 670
BshNI	GGYRCC	1 cut(s)	619
BslI	CCNNNNNNNGG	5 cut(s)	156, 458, 542, 677, 740
BsmAI	GTCTC	2 cut(s)	309, 709
BsnI	GGCC	7 cut(s)	63, 149, 207, 380, 485, 535, 670
Bso31I	GGTCTC	1 cut(s)	709
Bsp1286I	GDGCHC	3 cut(s)	622, 656, 761
Bsp143I	GATC	2 cut(s)	37, 814
Bsp1720I	GCTNAGC	1 cut(s)	230
BspACI	CCGC	1 cut(s)	317
BspANI	GGCC	7 cut(s)	63, 149, 207, 380, 485, 535, 670
BspHI	TCATGA	1 cut(s)	553
BspLI	GGNNCC	2 cut(s)	621, 653
BspMAI	CTGCAG	1 cut(s)	129
BspPI	GGATC	1 cut(s)	32
BspT107I	GGYRCC	1 cut(s)	619
BspTI	CTTAAG	1 cut(s)	308
BspTNI	GGTCTC	1 cut(s)	709
BsrI	ACTGG	3 cut(s)	11, 34, 413
BssECI	CCNNGG	2 cut(s)	212, 719
BssMI	GATC	2 cut(s)	37, 814
BssNAI	GTATAC	1 cut(s)	570
BssSI	CACGAG	1 cut(s)	293
BssT1I	CCWWGG	2 cut(s)	212, 719
Bst1107I	GTATAC	1 cut(s)	570
Bst2BI	CACGAG	1 cut(s)	293
Bst4CI	ACNGT	2 cut(s)	385, 837
Bst6I	CTCTTC	1 cut(s)	399
BstAFI	CTTAAG	1 cut(s)	308
BstC8I	GCNNGC	1 cut(s)	177
BstDEI	CTNAG	2 cut(s)	230, 657
BstF5I	GGATG	5 cut(s)	319, 463, 547, 610, 745
BstH2I	RGCGCY	2 cut(s)	242, 443
BstHHI	GCGC	2 cut(s)	241, 442
BstKTI	GATC	2 cut(s)	40, 817
BstMAI	GTCTC	2 cut(s)	309, 709
BstMBI	GATC	2 cut(s)	37, 814
BstMWI	GCNNNNNNNGC	2 cut(s)	226, 532
BstSFI	CTRYAG	1 cut(s)	125
BstSLI	GKGCMC	1 cut(s)	622
BstV1I	GCAGC	2 cut(s)	72, 341
BstV2I	GAAGAC	1 cut(s)	751
BstZ17I	GTATAC	1 cut(s)	570
BsuRI	GGCC	7 cut(s)	63, 149, 207, 380, 485, 535, 670
BtgZI	GCGATG	1 cut(s)	27
BtrI	CACGTC	1 cut(s)	100
BtsCI	GGATG	5 cut(s)	319, 463, 547, 610, 745
BtsIMutI	CAGTG	2 cut(s)	381, 833
Cac8I	GCNNGC	1 cut(s)	177
CciI	TCATGA	1 cut(s)	553
CfoI	GCGC	2 cut(s)	241, 442
Cfr13I	GGNCC	6 cut(s)	298, 449, 533, 596, 668, 731
Csp6I	GTAC	1 cut(s)	271
CviAII	CATG	7 cut(s)	15, 116, 133, 436, 554, 689, 700
CviQI	GTAC	1 cut(s)	271
DdeI	CTNAG	2 cut(s)	230, 657
DpnI	GATC	2 cut(s)	39, 816
DpnII	GATC	2 cut(s)	37, 814
DrdI	GACNNNNNNGTC	1 cut(s)	594
DseDI	GACNNNNNNGTC	1 cut(s)	594
EaeI	YGGCCR	2 cut(s)	147, 483
Eam1104I	CTCTTC	1 cut(s)	399
EarI	CTCTTC	1 cut(s)	399
Eco130I	CCWWGG	2 cut(s)	212, 719
Eco24I	GRGCYC	2 cut(s)	656, 761
Eco31I	GGTCTC	1 cut(s)	709
Eco47I	GGWCC	4 cut(s)	298, 449, 596, 731
Eco57I	CTGAAG	1 cut(s)	247
EcoO109I	RGGNCCY	2 cut(s)	298, 596
EcoT14I	CCWWGG	2 cut(s)	212, 719
EcoT38I	GRGCYC	2 cut(s)	656, 761
ErhI	CCWWGG	2 cut(s)	212, 719
FaeI	CATG	7 cut(s)	18, 119, 136, 439, 557, 692, 703
FalI	AAGNNNNNCTT	2 cut(s)	245, 277
FatI	CATG	7 cut(s)	14, 115, 132, 435, 553, 688, 699
FauI	CCCGC	1 cut(s)	310
FauNDI	CATATG	1 cut(s)	778
FbaI	TGATCA	1 cut(s)	814
FblI	GTMKAC	1 cut(s)	569
Fnu4HI	GCNGC	2 cut(s)	86, 330
FokI	GGATG	5 cut(s)	326, 470, 554, 617, 752
FriOI	GRGCYC	2 cut(s)	656, 761
Fsp4HI	GCNGC	2 cut(s)	86, 330
FspBI	CTAG	4 cut(s)	161, 333, 429, 648
GlaI	GCGC	2 cut(s)	240, 441
GluI	GCNGC	2 cut(s)	86, 330
GsaI	CCCAGC	1 cut(s)	238
HaeII	RGCGCY	2 cut(s)	242, 443
HaeIII	GGCC	7 cut(s)	63, 149, 207, 380, 485, 535, 670
HhaI	GCGC	2 cut(s)	241, 442
Hin1II	CATG	7 cut(s)	18, 119, 136, 439, 557, 692, 703
Hin6I	GCGC	2 cut(s)	239, 440
HinP1I	GCGC	2 cut(s)	239, 440
HincII	GTYRAC	1 cut(s)	796
HindII	GTYRAC	1 cut(s)	796
HindIII	AAGCTT	1 cut(s)	173
HinfI	GANTC	1 cut(s)	465
HphI	GGTGA	2 cut(s)	332, 409
Hpy166II	GTNNAC	2 cut(s)	570, 796
Hpy188I	TCNGA	2 cut(s)	248, 604
Hpy188III	TCNNGA	7 cut(s)	35, 293, 341, 447, 554, 737, 842
Hpy8I	GTNNAC	2 cut(s)	570, 796
HpyAV	CCTTC	7 cut(s)	79, 178, 394, 541, 609, 609, 778
HpyCH4III	ACNGT	2 cut(s)	385, 837
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	5 cut(s)	88, 127, 676, 771, 833
HpyF10VI	GCNNNNNNNGC	2 cut(s)	226, 532
HpyF3I	CTNAG	2 cut(s)	230, 657
HpySE526I	ACGT	1 cut(s)	99
Hsp92II	CATG	7 cut(s)	18, 119, 136, 439, 557, 692, 703
HspAI	GCGC	2 cut(s)	239, 440
Ksp22I	TGATCA	1 cut(s)	814
Kzo9I	GATC	2 cut(s)	37, 814
LmnI	GCTCC	3 cut(s)	356, 516, 651
Lsp1109I	GCAGC	2 cut(s)	72, 341
LweI	GCATC	1 cut(s)	304
MaeI	CTAG	4 cut(s)	161, 333, 429, 648
MaeII	ACGT	1 cut(s)	99
MaeIII	GTNAC	1 cut(s)	104
MalI	GATC	2 cut(s)	39, 816
MboI	GATC	2 cut(s)	37, 814
MboII	GAAGA	3 cut(s)	416, 693, 756
MhlI	GDGCHC	3 cut(s)	622, 656, 761
MlsI	TGGCCA	2 cut(s)	149, 485
MluCI	AATT	2 cut(s)	89, 763
MluNI	TGGCCA	2 cut(s)	149, 485
MlyI	GAGTC	1 cut(s)	474
MmeI	TCCRAC	1 cut(s)	519
Mox20I	TGGCCA	2 cut(s)	149, 485
MroXI	GAANNNNTTC	1 cut(s)	260
MscI	TGGCCA	2 cut(s)	149, 485
MseI	TTAA	2 cut(s)	276, 309
Msp20I	TGGCCA	2 cut(s)	149, 485
MspCI	CTTAAG	1 cut(s)	308
MwoI	GCNNNNNNNGC	2 cut(s)	226, 532
NdeI	CATATG	1 cut(s)	778
NdeII	GATC	2 cut(s)	37, 814
NlaIII	CATG	7 cut(s)	18, 119, 136, 439, 557, 692, 703
NlaIV	GGNNCC	2 cut(s)	621, 653
PagI	TCATGA	1 cut(s)	553
PdmI	GAANNNNTTC	1 cut(s)	260
PkrI	GCNGC	2 cut(s)	87, 331
PleI	GAGTC	1 cut(s)	473
PpsI	GAGTC	1 cut(s)	473
PpuMI	RGGWCCY	2 cut(s)	298, 596
Psp5II	RGGWCCY	2 cut(s)	298, 596
PspFI	CCCAGC	1 cut(s)	234
PspN4I	GGNNCC	2 cut(s)	621, 653
PspPI	GGNCC	6 cut(s)	298, 449, 533, 596, 668, 731
PspPPI	RGGWCCY	2 cut(s)	298, 596
PstI	CTGCAG	1 cut(s)	129
RsaI	GTAC	1 cut(s)	272
RsaNI	GTAC	1 cut(s)	271
SaqAI	TTAA	2 cut(s)	276, 309
SatI	GCNGC	2 cut(s)	86, 330
Sau3AI	GATC	2 cut(s)	37, 814
Sau96I	GGNCC	6 cut(s)	298, 449, 533, 596, 668, 731
ScaI	AGTACT	1 cut(s)	272
SchI	GAGTC	1 cut(s)	474
SduI	GDGCHC	3 cut(s)	622, 656, 761
SfaNI	GCATC	1 cut(s)	304
SfcI	CTRYAG	1 cut(s)	125
SinI	GGWCC	4 cut(s)	298, 449, 596, 731
SmlI	CTYRAG	2 cut(s)	170, 308
SmoI	CTYRAG	2 cut(s)	170, 308
Sse9I	AATT	2 cut(s)	89, 763
SsiI	CCGC	1 cut(s)	317
SspMI	CTAG	4 cut(s)	161, 333, 429, 648
StyI	CCWWGG	2 cut(s)	212, 719
TaaI	ACNGT	2 cut(s)	385, 837
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	2 cut(s)	93, 111
TasI	AATT	2 cut(s)	89, 763
TatI	WGTACW	1 cut(s)	270
Tru1I	TTAA	2 cut(s)	276, 309
Tru9I	TTAA	2 cut(s)	276, 309
TscAI	CASTG	2 cut(s)	388, 840
TseI	GCWGC	2 cut(s)	85, 329
TspDTI	ATGAA	1 cut(s)	542
TspRI	CASTG	2 cut(s)	388, 840
Vha464I	CTTAAG	1 cut(s)	308
VpaK11BI	GGWCC	4 cut(s)	298, 449, 596, 731
XapI	RAATTY	1 cut(s)	763
XmiI	GTMKAC	1 cut(s)	569
XmnI	GAANNNNTTC	1 cut(s)	260
XspI	CTAG	4 cut(s)	161, 333, 429, 648
ZrmI	AGTACT	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.