Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0008824

Physical Location & Seq

Genomic Coordinates Reverse (-)

1467617 .. 1468962

Gene Structure 1346 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG024700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGACAAATTTGTTGGGTCTCCCTTACTATGCAAAGCGATATCAACTTACCCACCACATTAAATTTTTATATTTATCATCATCTTCTTCTTTCTTATATCTCTTCCAAACTCTTAACACAGCCTCACATTGTCACAGAGCCATGGACTGGTTCGCATGGCTGTCGAAAACCAGCCTTGAACCAAGCCTTGTCTATGAGTACGGCATCATCTTCTCTCGCAACGAGCTTCAAATGGAGGACGTTGCTTTCTTCAACCATGAGTTTCTGCTGAGCATGGGAGTTTCTGTGGCCAAGCACAGGCTAGAGATACTCAAGCTTGCCAAGAAGGAAAACGAGGGTGGCGGCGGCGGCGGTCACCGCCACCACCCAAGGTCAATTTCAAGGCTCGGCTGGGCGCTCATCAAAACCAAGAAGTGTTTCAACAAGTACTTTACAAGATTGGCTTTCCAAGAGAACGACATGTCATCGTCCCCCAGGCAAGTAGCTGATCAGCCAGAGAAGTATCAAGATCATTGGAGAGGAAGTCTGCTGAGGAAGCCAAAGGGTCATGAGGAGGTCAAAACTCGGAGCATTGCGCTATCGGGGCCGTTGGATATGAGGACTCATGAGAGGTTGATGATGGTCCCTAACCCTAGGAGCTTGAAGCTATCAGGACCCTTAGACTCAAAGGTCAATCAGAGGCTCATGTACACAGCAAATAGGAGCCCTAGGCTCACTTCAGGTCCTATGGTGACCGACAAGCTAATGGTTGCAGAAAATAGGAGCCCCAAGGCATCCGGACCGTACGATGGACGATCATATGATCGGCTGATGGTGACGAAGAATAGGAGCCCGAGGCTGTCCGAACCGCTTGATGGAAAAGTCACTCCGTATGAGAAGGAAAGGGTGGACGTTTTTGATGACCATTCACTTTGGACTGCTATGTTTCAGGATATGAAACCCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAM_2

Protein Analysis

315

Amino Acids

36.36

Weight (kDa)

9.71

Isoelectric Point (pI)

44.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008824)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01970
malus_domestica	MD02G1018000.v1.1 MD15G1161900.v1.1
prunus_persica	Prupe.7G257100_v2.0.a1
pyrus_communis	pycom02g01600 pycom15g14550
rosa_chinensis	RchiOBHm_Chr2g0087001
rosa_laevigata	RLG00000002278 RLG00000015821
rosa_multiflora	Rmu_sc0010698.1_g000001 Rmu_sc0029090.1_g000001 Rmu_sc0030653.1_g000001
rosa_roxburghii	Rroxscaffold_2G00153970
rosa_rugosa	Rorug01G0471400 Rorug07G0186800
rosa_samantha	Rh2AG024200 Rh2BG024700 Rh2CG024800 Rh2DG024700 Rh7AG330800 Rh7BG320500
rosa_wichuraiana	Rw2G001900 Rw2G001950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	668
AccB7I	CCANNNNNTGG	1 cut(s)	147
AccIII	TCCGGA	1 cut(s)	776
AciI	CCGC	6 cut(s)	342, 345, 348, 351, 358, 848
AcoI	YGGCCR	1 cut(s)	288
AcsI	RAATTY	2 cut(s)	7, 62
AcuI	CTGAAG	1 cut(s)	702
AfaI	GTAC	4 cut(s)	200, 428, 689, 785
AfiI	CCNNNNNNNGG	4 cut(s)	147, 297, 788, 854
AflIII	ACRYGT	1 cut(s)	459
AgsI	TTSAA	6 cut(s)	179, 230, 253, 381, 421, 643
AjnI	CCWGG	1 cut(s)	473
AjuI	GAANNNNNNNTTGG	4 cut(s)	361, 393, 401, 433
AluBI	AGCT	6 cut(s)	226, 316, 485, 639, 646, 742
AluI	AGCT	6 cut(s)	226, 316, 485, 639, 646, 742
Alw26I	GTCTC	1 cut(s)	23
Ama87I	CYCGRG	1 cut(s)	832
Aor13HI	TCCGGA	1 cut(s)	776
AoxI	GGCC	2 cut(s)	288, 584
ApoI	RAATTY	2 cut(s)	7, 62
Asp700I	GAANNNNTTC	1 cut(s)	416
AspA2I	CCTAGG	2 cut(s)	632, 707
AspLEI	GCGC	2 cut(s)	397, 577
AspS9I	GGNCC	5 cut(s)	584, 622, 653, 722, 779
AsuHPI	GGTGA	3 cut(s)	347, 742, 826
AvaI	CYCGRG	1 cut(s)	832
AvaII	GGWCC	4 cut(s)	622, 653, 722, 779
AvrII	CCTAGG	2 cut(s)	632, 707
BalI	TGGCCA	1 cut(s)	290
BanII	GRGCYC	3 cut(s)	707, 767, 833
BbvCI	CCTCAGC	1 cut(s)	530
BccI	CCATC	4 cut(s)	613, 782, 805, 848
BceAI	ACGGC	2 cut(s)	217, 571
BcgI	CGANNNNNNTGC	2 cut(s)	144, 178
BciT130I	CCWGG	1 cut(s)	475
BclI	TGATCA	1 cut(s)	487
BcoDI	GTCTC	1 cut(s)	23
BfaI	CTAG	3 cut(s)	302, 633, 708
BfoI	RGCGCY	1 cut(s)	398
BisI	GCNGC	3 cut(s)	343, 346, 349
BlnI	CCTAGG	2 cut(s)	632, 707
BlpI	GCTNAGC	1 cut(s)	269
BlsI	GCNGC	3 cut(s)	344, 347, 350
BmcAI	AGTACT	1 cut(s)	428
Bme1390I	CCNGG	1 cut(s)	475
Bme18I	GGWCC	4 cut(s)	622, 653, 722, 779
BmeT110I	CYCGRG	1 cut(s)	832
BmgT120I	GGNCC	5 cut(s)	584, 622, 653, 722, 779
BmiI	GGNNCC	6 cut(s)	585, 624, 655, 704, 764, 830
BmrFI	CCNGG	1 cut(s)	475
BmsI	GCATC	2 cut(s)	213, 782
Bpu10I	CCTNAGC	1 cut(s)	530
Bpu1102I	GCTNAGC	1 cut(s)	269
BpuEI	CTTGAG	1 cut(s)	296
BsaI	GGTCTC	1 cut(s)	23
BsaJI	CCNNGG	7 cut(s)	141, 368, 473, 632, 707, 768, 833
BsaWI	WCCGGW	1 cut(s)	776
BsaXI	ACNNNNNCTCC	4 cut(s)	270, 300, 508, 538
Bsc4I	CCNNNNNNNGG	4 cut(s)	147, 297, 788, 854
Bse1I	ACTGG	1 cut(s)	152
Bse3DI	GCAATG	1 cut(s)	570
BseAI	TCCGGA	1 cut(s)	776
BseBI	CCWGG	1 cut(s)	475
BseDI	CCNNGG	7 cut(s)	141, 368, 473, 632, 707, 768, 833
BseGI	GGATG	1 cut(s)	773
BseLI	CCNNNNNNNGG	4 cut(s)	147, 297, 788, 854
BseMI	GCAATG	1 cut(s)	570
BseMII	CTCAG	2 cut(s)	260, 521
BseNI	ACTGG	1 cut(s)	152
BseRI	GAGGAG	1 cut(s)	566
BseYI	CCCAGC	1 cut(s)	390
BshFI	GGCC	2 cut(s)	290, 586
BsiHKCI	CYCGRG	1 cut(s)	832
BsiSI	CCGG	1 cut(s)	777
BsiWI	CGTACG	1 cut(s)	783
BslFI	GGGAC	2 cut(s)	454, 608
BslI	CCNNNNNNNGG	4 cut(s)	147, 297, 788, 854
BsmAI	GTCTC	1 cut(s)	23
BsmFI	GGGAC	2 cut(s)	454, 608
BsnI	GGCC	2 cut(s)	290, 586
Bso31I	GGTCTC	1 cut(s)	23
BsoBI	CYCGRG	1 cut(s)	832
Bsp1286I	GDGCHC	3 cut(s)	707, 767, 833
Bsp13I	TCCGGA	1 cut(s)	776
Bsp1407I	TGTACA	1 cut(s)	687
Bsp143I	GATC	4 cut(s)	487, 508, 794, 802
Bsp1720I	GCTNAGC	1 cut(s)	269
Bsp19I	CCATGG	1 cut(s)	141
BspACI	CCGC	6 cut(s)	342, 345, 348, 351, 358, 848
BspANI	GGCC	2 cut(s)	290, 586
BspCNI	CTCAG	2 cut(s)	261, 522
BspEI	TCCGGA	1 cut(s)	776
BspHI	TCATGA	2 cut(s)	547, 604
BspLI	GGNNCC	6 cut(s)	585, 624, 655, 704, 764, 830
BspTNI	GGTCTC	1 cut(s)	23
BsrDI	GCAATG	1 cut(s)	570
BsrGI	TGTACA	1 cut(s)	687
BsrI	ACTGG	1 cut(s)	152
BssECI	CCNNGG	7 cut(s)	141, 368, 473, 632, 707, 768, 833
BssMI	GATC	4 cut(s)	487, 508, 794, 802
BssT1I	CCWWGG	5 cut(s)	141, 368, 632, 707, 768
Bst2UI	CCWGG	1 cut(s)	475
Bst4CI	ACNGT	1 cut(s)	783
Bst6I	CTCTTC	1 cut(s)	107
BstAUI	TGTACA	1 cut(s)	687
BstC8I	GCNNGC	1 cut(s)	318
BstDEI	CTNAG	3 cut(s)	269, 530, 658
BstDSI	CCRYGG	1 cut(s)	141
BstEII	GGTNACC	2 cut(s)	353, 730
BstF5I	GGATG	1 cut(s)	773
BstH2I	RGCGCY	1 cut(s)	398
BstHHI	GCGC	2 cut(s)	397, 577
BstKTI	GATC	4 cut(s)	490, 511, 797, 805
BstMAI	GTCTC	1 cut(s)	23
BstMBI	GATC	4 cut(s)	487, 508, 794, 802
BstMWI	GCNNNNNNNGC	4 cut(s)	348, 357, 535, 583
BstNI	CCWGG	1 cut(s)	475
BstNSI	RCATGY	1 cut(s)	463
BstPI	GGTNACC	2 cut(s)	353, 730
BstSCI	CCNGG	1 cut(s)	473
BsuRI	GGCC	2 cut(s)	290, 586
BtgI	CCRYGG	1 cut(s)	141
BtsCI	GGATG	1 cut(s)	773
Cac8I	GCNNGC	1 cut(s)	318
CciI	TCATGA	2 cut(s)	547, 604
CfoI	GCGC	2 cut(s)	397, 577
Cfr13I	GGNCC	5 cut(s)	584, 622, 653, 722, 779
CpoI	CGGWCCG	1 cut(s)	779
Csp6I	GTAC	4 cut(s)	199, 427, 688, 784
CspI	CGGWCCG	1 cut(s)	779
CviAII	CATG	8 cut(s)	142, 156, 257, 274, 460, 548, 605, 685
CviQI	GTAC	4 cut(s)	199, 427, 688, 784
DdeI	CTNAG	3 cut(s)	269, 530, 658
DpnI	GATC	4 cut(s)	489, 510, 796, 804
DpnII	GATC	4 cut(s)	487, 508, 794, 802
DrdI	GACNNNNNNGTC	1 cut(s)	668
DseDI	GACNNNNNNGTC	1 cut(s)	668
EaeI	YGGCCR	1 cut(s)	288
Eam1104I	CTCTTC	1 cut(s)	107
EarI	CTCTTC	1 cut(s)	107
Eco130I	CCWWGG	5 cut(s)	141, 368, 632, 707, 768
Eco24I	GRGCYC	3 cut(s)	707, 767, 833
Eco31I	GGTCTC	1 cut(s)	23
Eco32I	GATATC	1 cut(s)	41
Eco47I	GGWCC	4 cut(s)	622, 653, 722, 779
Eco57I	CTGAAG	1 cut(s)	702
Eco88I	CYCGRG	1 cut(s)	832
Eco91I	GGTNACC	2 cut(s)	353, 730
EcoO109I	RGGNCCY	2 cut(s)	653, 722
EcoO65I	GGTNACC	2 cut(s)	353, 730
EcoRII	CCWGG	1 cut(s)	473
EcoRV	GATATC	1 cut(s)	41
EcoT14I	CCWWGG	5 cut(s)	141, 368, 632, 707, 768
EcoT38I	GRGCYC	3 cut(s)	707, 767, 833
ErhI	CCWWGG	5 cut(s)	141, 368, 632, 707, 768
FaeI	CATG	8 cut(s)	145, 159, 260, 277, 463, 551, 608, 688
FalI	AAGNNNNNCTT	2 cut(s)	427, 459
FaqI	GGGAC	2 cut(s)	454, 608
FatI	CATG	8 cut(s)	141, 155, 256, 273, 459, 547, 604, 684
FauNDI	CATATG	1 cut(s)	799
FbaI	TGATCA	1 cut(s)	487
Fnu4HI	GCNGC	3 cut(s)	343, 346, 349
FokI	GGATG	1 cut(s)	760
FriOI	GRGCYC	3 cut(s)	707, 767, 833
Fsp4HI	GCNGC	3 cut(s)	343, 346, 349
FspBI	CTAG	3 cut(s)	302, 633, 708
GlaI	GCGC	2 cut(s)	396, 576
GluI	GCNGC	3 cut(s)	343, 346, 349
GsaI	CCCAGC	1 cut(s)	394
HaeII	RGCGCY	1 cut(s)	398
HaeIII	GGCC	2 cut(s)	290, 586
HapII	CCGG	1 cut(s)	777
HhaI	GCGC	2 cut(s)	397, 577
Hin1II	CATG	8 cut(s)	145, 159, 260, 277, 463, 551, 608, 688
Hin6I	GCGC	2 cut(s)	395, 575
HinP1I	GCGC	2 cut(s)	395, 575
HindIII	AAGCTT	1 cut(s)	314
HinfI	GANTC	2 cut(s)	601, 662
HpaII	CCGG	1 cut(s)	777
HphI	GGTGA	3 cut(s)	347, 742, 826
Hpy166II	GTNNAC	2 cut(s)	690, 889
Hpy188I	TCNGA	3 cut(s)	567, 678, 844
Hpy188III	TCNNGA	6 cut(s)	506, 548, 605, 651, 777, 929
Hpy8I	GTNNAC	2 cut(s)	690, 889
HpyAV	CCTTC	2 cut(s)	319, 871
HpyCH4III	ACNGT	1 cut(s)	783
HpyCH4IV	ACGT	2 cut(s)	240, 891
HpyCH4V	TGCA	2 cut(s)	32, 752
HpyF10VI	GCNNNNNNNGC	4 cut(s)	348, 357, 535, 583
HpyF3I	CTNAG	3 cut(s)	269, 530, 658
HpySE526I	ACGT	2 cut(s)	240, 891
Hsp92II	CATG	8 cut(s)	145, 159, 260, 277, 463, 551, 608, 688
HspAI	GCGC	2 cut(s)	395, 575
Kpn2I	TCCGGA	1 cut(s)	776
Ksp22I	TGATCA	1 cut(s)	487
Kzo9I	GATC	4 cut(s)	487, 508, 794, 802
LmnI	GCTCC	5 cut(s)	567, 636, 702, 762, 828
LweI	GCATC	2 cut(s)	213, 782
MaeI	CTAG	3 cut(s)	302, 633, 708
MaeII	ACGT	2 cut(s)	240, 891
MaeIII	GTNAC	5 cut(s)	131, 353, 730, 814, 862
MalI	GATC	4 cut(s)	489, 510, 796, 804
MboI	GATC	4 cut(s)	487, 508, 794, 802
MboII	GAAGA	6 cut(s)	75, 78, 94, 202, 241, 832
MhlI	GDGCHC	3 cut(s)	707, 767, 833
MlsI	TGGCCA	1 cut(s)	290
MluCI	AATT	3 cut(s)	7, 62, 375
MluNI	TGGCCA	1 cut(s)	290
MlyI	GAGTC	2 cut(s)	595, 656
MmeI	TCCRAC	1 cut(s)	570
Mox20I	TGGCCA	1 cut(s)	290
MroI	TCCGGA	1 cut(s)	776
MroXI	GAANNNNTTC	1 cut(s)	416
MscI	TGGCCA	1 cut(s)	290
MseI	TTAA	2 cut(s)	60, 114
Msp20I	TGGCCA	1 cut(s)	290
MspI	CCGG	1 cut(s)	777
MspR9I	CCNGG	1 cut(s)	475
MvaI	CCWGG	1 cut(s)	475
MwoI	GCNNNNNNNGC	4 cut(s)	348, 357, 535, 583
NcoI	CCATGG	1 cut(s)	141
NdeI	CATATG	1 cut(s)	799
NdeII	GATC	4 cut(s)	487, 508, 794, 802
NlaIII	CATG	8 cut(s)	145, 159, 260, 277, 463, 551, 608, 688
NlaIV	GGNNCC	6 cut(s)	585, 624, 655, 704, 764, 830
NmeAIII	GCCGAG	1 cut(s)	366
NmuCI	GTSAC	5 cut(s)	131, 353, 730, 814, 862
NspI	RCATGY	1 cut(s)	463
PagI	TCATGA	2 cut(s)	547, 604
PciI	ACATGT	1 cut(s)	459
PdmI	GAANNNNTTC	1 cut(s)	416
Pfl23II	CGTACG	1 cut(s)	783
PflMI	CCANNNNNTGG	1 cut(s)	147
PkrI	GCNGC	3 cut(s)	344, 347, 350
PleI	GAGTC	2 cut(s)	595, 656
PpsI	GAGTC	2 cut(s)	595, 656
PpuMI	RGGWCCY	2 cut(s)	653, 722
PscI	ACATGT	1 cut(s)	459
Psp5II	RGGWCCY	2 cut(s)	653, 722
Psp6I	CCWGG	1 cut(s)	473
PspEI	GGTNACC	2 cut(s)	353, 730
PspFI	CCCAGC	1 cut(s)	390
PspGI	CCWGG	1 cut(s)	473
PspLI	CGTACG	1 cut(s)	783
PspN4I	GGNNCC	6 cut(s)	585, 624, 655, 704, 764, 830
PspPI	GGNCC	5 cut(s)	584, 622, 653, 722, 779
PspPPI	RGGWCCY	2 cut(s)	653, 722
RsaI	GTAC	4 cut(s)	200, 428, 689, 785
RsaNI	GTAC	4 cut(s)	199, 427, 688, 784
Rsr2I	CGGWCCG	1 cut(s)	779
RsrII	CGGWCCG	1 cut(s)	779
SaqAI	TTAA	2 cut(s)	60, 114
SatI	GCNGC	3 cut(s)	343, 346, 349
Sau3AI	GATC	4 cut(s)	487, 508, 794, 802
Sau96I	GGNCC	5 cut(s)	584, 622, 653, 722, 779
ScaI	AGTACT	1 cut(s)	428
SchI	GAGTC	2 cut(s)	595, 656
ScrFI	CCNGG	1 cut(s)	475
SduI	GDGCHC	3 cut(s)	707, 767, 833
SfaNI	GCATC	2 cut(s)	213, 782
SinI	GGWCC	4 cut(s)	622, 653, 722, 779
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
Sse9I	AATT	3 cut(s)	7, 62, 375
SsiI	CCGC	6 cut(s)	342, 345, 348, 351, 358, 848
SspMI	CTAG	3 cut(s)	302, 633, 708
StyD4I	CCNGG	1 cut(s)	473
StyI	CCWWGG	5 cut(s)	141, 368, 632, 707, 768
TaaI	ACNGT	1 cut(s)	783
TaiI	ACGT	2 cut(s)	243, 894
TaqI	TCGA	1 cut(s)	164
TaqII	GACCGA	1 cut(s)	749
TasI	AATT	3 cut(s)	7, 62, 375
TatI	WGTACW	2 cut(s)	426, 687
TauI	GCSGC	3 cut(s)	345, 348, 351
Tru1I	TTAA	2 cut(s)	60, 114
Tru9I	TTAA	2 cut(s)	60, 114
TseFI	GTSAC	5 cut(s)	131, 353, 730, 814, 862
Tsp45I	GTSAC	5 cut(s)	131, 353, 730, 814, 862
TspGWI	ACGGA	1 cut(s)	858
Van91I	CCANNNNNTGG	1 cut(s)	147
VpaK11BI	GGWCC	4 cut(s)	622, 653, 722, 779
XapI	RAATTY	2 cut(s)	7, 62
XceI	RCATGY	1 cut(s)	463
XmaJI	CCTAGG	2 cut(s)	632, 707
XmnI	GAANNNNTTC	1 cut(s)	416
XspI	CTAG	3 cut(s)	302, 633, 708
ZrmI	AGTACT	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.