Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029090.1

Orthogroup ID

OG0008824

Physical Location & Seq

Genomic Coordinates Reverse (-)

803 .. 1294

Gene Structure 492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029090.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

atgtcatcgtcccccaggcaagtagctgatcagccagagaagtatcaagagcattggagaggaagtctgctgaggaagccaaaaggtcatgaggaggtcaaaactcggagcattgcgctatcggggccgttggatatgaggactcatgagaggttgatgatggtccccaaccctaggagcttgaagctatcaggacccttagactcaaaggtcaatcagaggctcatgtacacagcaaataggagccctaggctcacttcaggtcctatggtgaccgacaagctaatggttgcagcaaataggagccccaaggcatccggaccgtacgatggacgatcatatgatcggctgatggtgacgaagaataggagcccgaggctgtccgaaccgcttgatggaaaagtcactccgtatgagaaggaaagggtggacgttgattttgatgaccattcactttggactgctatgtttcaggatatgaaacccacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAM_2

Protein Analysis

163

Amino Acids

18.63

Weight (kDa)

9.83

Isoelectric Point (pI)

44.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008824)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01970
malus_domestica	MD02G1018000.v1.1 MD15G1161900.v1.1
prunus_persica	Prupe.7G257100_v2.0.a1
pyrus_communis	pycom02g01600 pycom15g14550
rosa_chinensis	RchiOBHm_Chr2g0087001
rosa_laevigata	RLG00000002278 RLG00000015821
rosa_multiflora	Rmu_sc0010698.1_g000001 Rmu_sc0029090.1_g000001 Rmu_sc0030653.1_g000001
rosa_roxburghii	Rroxscaffold_2G00153970
rosa_rugosa	Rorug01G0471400 Rorug07G0186800
rosa_samantha	Rh2AG024200 Rh2BG024700 Rh2CG024800 Rh2DG024700 Rh7AG330800 Rh7BG320500
rosa_wichuraiana	Rw2G001900 Rw2G001950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	209
AccIII	TCCGGA	1 cut(s)	317
AciI	CCGC	1 cut(s)	389
AcuI	CTGAAG	1 cut(s)	243
AfaI	GTAC	2 cut(s)	230, 326
AfiI	CCNNNNNNNGG	3 cut(s)	174, 329, 395
AgsI	TTSAA	1 cut(s)	184
AjnI	CCWGG	1 cut(s)	14
AluBI	AGCT	4 cut(s)	26, 180, 187, 283
AluI	AGCT	4 cut(s)	26, 180, 187, 283
Ama87I	CYCGRG	1 cut(s)	373
Aor13HI	TCCGGA	1 cut(s)	317
AoxI	GGCC	1 cut(s)	125
ApeKI	GCWGC	1 cut(s)	293
ArsI	GACNNNNNNTTYG	2 cut(s)	422, 454
AspA2I	CCTAGG	2 cut(s)	173, 248
AspLEI	GCGC	1 cut(s)	118
AspS9I	GGNCC	5 cut(s)	125, 163, 194, 263, 320
AsuHPI	GGTGA	2 cut(s)	283, 367
AvaI	CYCGRG	1 cut(s)	373
AvaII	GGWCC	4 cut(s)	163, 194, 263, 320
AvrII	CCTAGG	2 cut(s)	173, 248
BanII	GRGCYC	3 cut(s)	248, 308, 374
BbvCI	CCTCAGC	1 cut(s)	71
BbvI	GCAGC	1 cut(s)	305
BccI	CCATC	4 cut(s)	154, 323, 346, 389
BceAI	ACGGC	1 cut(s)	112
BciT130I	CCWGG	1 cut(s)	16
BclI	TGATCA	1 cut(s)	28
BfaI	CTAG	2 cut(s)	174, 249
BisI	GCNGC	1 cut(s)	294
BlnI	CCTAGG	2 cut(s)	173, 248
BlsI	GCNGC	1 cut(s)	295
Bme1390I	CCNGG	1 cut(s)	16
Bme18I	GGWCC	4 cut(s)	163, 194, 263, 320
BmeT110I	CYCGRG	1 cut(s)	373
BmgT120I	GGNCC	5 cut(s)	125, 163, 194, 263, 320
BmiI	GGNNCC	6 cut(s)	126, 165, 196, 245, 305, 371
BmrFI	CCNGG	1 cut(s)	16
BmsI	GCATC	1 cut(s)	323
Bpu10I	CCTNAGC	1 cut(s)	71
BsaJI	CCNNGG	5 cut(s)	14, 173, 248, 309, 374
BsaWI	WCCGGW	1 cut(s)	317
BsaXI	ACNNNNNCTCC	2 cut(s)	49, 79
Bsc4I	CCNNNNNNNGG	3 cut(s)	174, 329, 395
Bse3DI	GCAATG	1 cut(s)	111
BseAI	TCCGGA	1 cut(s)	317
BseBI	CCWGG	1 cut(s)	16
BseDI	CCNNGG	5 cut(s)	14, 173, 248, 309, 374
BseGI	GGATG	1 cut(s)	314
BseLI	CCNNNNNNNGG	3 cut(s)	174, 329, 395
BseMI	GCAATG	1 cut(s)	111
BseMII	CTCAG	1 cut(s)	62
BseRI	GAGGAG	1 cut(s)	107
BseXI	GCAGC	1 cut(s)	305
BshFI	GGCC	1 cut(s)	127
BsiHKCI	CYCGRG	1 cut(s)	373
BsiSI	CCGG	1 cut(s)	318
BsiWI	CGTACG	1 cut(s)	324
BslFI	GGGAC	1 cut(s)	149
BslI	CCNNNNNNNGG	3 cut(s)	174, 329, 395
BsmFI	GGGAC	1 cut(s)	149
BsnI	GGCC	1 cut(s)	127
BsoBI	CYCGRG	1 cut(s)	373
Bsp1286I	GDGCHC	3 cut(s)	248, 308, 374
Bsp13I	TCCGGA	1 cut(s)	317
Bsp1407I	TGTACA	1 cut(s)	228
Bsp143I	GATC	3 cut(s)	28, 335, 343
BspACI	CCGC	1 cut(s)	389
BspANI	GGCC	1 cut(s)	127
BspCNI	CTCAG	1 cut(s)	63
BspEI	TCCGGA	1 cut(s)	317
BspHI	TCATGA	2 cut(s)	88, 145
BspLI	GGNNCC	6 cut(s)	126, 165, 196, 245, 305, 371
BsrDI	GCAATG	1 cut(s)	111
BsrGI	TGTACA	1 cut(s)	228
BssECI	CCNNGG	5 cut(s)	14, 173, 248, 309, 374
BssMI	GATC	3 cut(s)	28, 335, 343
BssT1I	CCWWGG	3 cut(s)	173, 248, 309
Bst2UI	CCWGG	1 cut(s)	16
Bst4CI	ACNGT	1 cut(s)	324
BstAUI	TGTACA	1 cut(s)	228
BstDEI	CTNAG	2 cut(s)	71, 199
BstEII	GGTNACC	1 cut(s)	271
BstF5I	GGATG	1 cut(s)	314
BstHHI	GCGC	1 cut(s)	118
BstKTI	GATC	3 cut(s)	31, 338, 346
BstMBI	GATC	3 cut(s)	28, 335, 343
BstMWI	GCNNNNNNNGC	2 cut(s)	76, 124
BstNI	CCWGG	1 cut(s)	16
BstPI	GGTNACC	1 cut(s)	271
BstSCI	CCNGG	1 cut(s)	14
BstV1I	GCAGC	1 cut(s)	305
BsuRI	GGCC	1 cut(s)	127
BtsCI	GGATG	1 cut(s)	314
CciI	TCATGA	2 cut(s)	88, 145
CfoI	GCGC	1 cut(s)	118
Cfr13I	GGNCC	5 cut(s)	125, 163, 194, 263, 320
CpoI	CGGWCCG	1 cut(s)	320
Csp6I	GTAC	2 cut(s)	229, 325
CspI	CGGWCCG	1 cut(s)	320
CviAII	CATG	3 cut(s)	89, 146, 226
CviQI	GTAC	2 cut(s)	229, 325
DdeI	CTNAG	2 cut(s)	71, 199
DpnI	GATC	3 cut(s)	30, 337, 345
DpnII	GATC	3 cut(s)	28, 335, 343
DrdI	GACNNNNNNGTC	1 cut(s)	209
DseDI	GACNNNNNNGTC	1 cut(s)	209
Eco130I	CCWWGG	3 cut(s)	173, 248, 309
Eco24I	GRGCYC	3 cut(s)	248, 308, 374
Eco47I	GGWCC	4 cut(s)	163, 194, 263, 320
Eco57I	CTGAAG	1 cut(s)	243
Eco88I	CYCGRG	1 cut(s)	373
Eco91I	GGTNACC	1 cut(s)	271
EcoO109I	RGGNCCY	2 cut(s)	194, 263
EcoO65I	GGTNACC	1 cut(s)	271
EcoRII	CCWGG	1 cut(s)	14
EcoT14I	CCWWGG	3 cut(s)	173, 248, 309
EcoT38I	GRGCYC	3 cut(s)	248, 308, 374
ErhI	CCWWGG	3 cut(s)	173, 248, 309
FaeI	CATG	3 cut(s)	92, 149, 229
FaqI	GGGAC	1 cut(s)	149
FatI	CATG	3 cut(s)	88, 145, 225
FauNDI	CATATG	1 cut(s)	340
FbaI	TGATCA	1 cut(s)	28
Fnu4HI	GCNGC	1 cut(s)	294
FokI	GGATG	1 cut(s)	301
FriOI	GRGCYC	3 cut(s)	248, 308, 374
Fsp4HI	GCNGC	1 cut(s)	294
FspBI	CTAG	2 cut(s)	174, 249
GlaI	GCGC	1 cut(s)	117
GluI	GCNGC	1 cut(s)	294
HaeIII	GGCC	1 cut(s)	127
HapII	CCGG	1 cut(s)	318
HhaI	GCGC	1 cut(s)	118
Hin1II	CATG	3 cut(s)	92, 149, 229
Hin6I	GCGC	1 cut(s)	116
HinP1I	GCGC	1 cut(s)	116
HinfI	GANTC	2 cut(s)	142, 203
HpaII	CCGG	1 cut(s)	318
HphI	GGTGA	2 cut(s)	283, 367
Hpy166II	GTNNAC	2 cut(s)	231, 430
Hpy188I	TCNGA	3 cut(s)	108, 219, 385
Hpy188III	TCNNGA	6 cut(s)	47, 89, 146, 192, 318, 473
Hpy8I	GTNNAC	2 cut(s)	231, 430
HpyAV	CCTTC	1 cut(s)	412
HpyCH4III	ACNGT	1 cut(s)	324
HpyCH4IV	ACGT	1 cut(s)	432
HpyCH4V	TGCA	1 cut(s)	293
HpyF10VI	GCNNNNNNNGC	2 cut(s)	76, 124
HpyF3I	CTNAG	2 cut(s)	71, 199
HpySE526I	ACGT	1 cut(s)	432
Hsp92II	CATG	3 cut(s)	92, 149, 229
HspAI	GCGC	1 cut(s)	116
Kpn2I	TCCGGA	1 cut(s)	317
Ksp22I	TGATCA	1 cut(s)	28
Kzo9I	GATC	3 cut(s)	28, 335, 343
LmnI	GCTCC	5 cut(s)	108, 177, 243, 303, 369
LpnPI	CCDG	6 cut(s)	28, 48, 177, 246, 331, 458
Lsp1109I	GCAGC	1 cut(s)	305
LweI	GCATC	1 cut(s)	323
MaeI	CTAG	2 cut(s)	174, 249
MaeII	ACGT	1 cut(s)	432
MaeIII	GTNAC	3 cut(s)	271, 355, 403
MalI	GATC	3 cut(s)	30, 337, 345
MboI	GATC	3 cut(s)	28, 335, 343
MboII	GAAGA	1 cut(s)	373
MhlI	GDGCHC	3 cut(s)	248, 308, 374
MlyI	GAGTC	2 cut(s)	136, 197
MmeI	TCCRAC	1 cut(s)	111
MnlI	CCTC	8 cut(s)	53, 66, 85, 88, 132, 144, 213, 369
MroI	TCCGGA	1 cut(s)	317
MspI	CCGG	1 cut(s)	318
MspR9I	CCNGG	1 cut(s)	16
MvaI	CCWGG	1 cut(s)	16
MwoI	GCNNNNNNNGC	2 cut(s)	76, 124
NdeI	CATATG	1 cut(s)	340
NdeII	GATC	3 cut(s)	28, 335, 343
NlaIII	CATG	3 cut(s)	92, 149, 229
NlaIV	GGNNCC	6 cut(s)	126, 165, 196, 245, 305, 371
NmuCI	GTSAC	3 cut(s)	271, 355, 403
PagI	TCATGA	2 cut(s)	88, 145
Pfl23II	CGTACG	1 cut(s)	324
PkrI	GCNGC	1 cut(s)	295
PleI	GAGTC	2 cut(s)	136, 197
PpsI	GAGTC	2 cut(s)	136, 197
PpuMI	RGGWCCY	2 cut(s)	194, 263
Psp5II	RGGWCCY	2 cut(s)	194, 263
Psp6I	CCWGG	1 cut(s)	14
PspEI	GGTNACC	1 cut(s)	271
PspGI	CCWGG	1 cut(s)	14
PspLI	CGTACG	1 cut(s)	324
PspN4I	GGNNCC	6 cut(s)	126, 165, 196, 245, 305, 371
PspPI	GGNCC	5 cut(s)	125, 163, 194, 263, 320
PspPPI	RGGWCCY	2 cut(s)	194, 263
RsaI	GTAC	2 cut(s)	230, 326
RsaNI	GTAC	2 cut(s)	229, 325
Rsr2I	CGGWCCG	1 cut(s)	320
RsrII	CGGWCCG	1 cut(s)	320
SatI	GCNGC	1 cut(s)	294
Sau3AI	GATC	3 cut(s)	28, 335, 343
Sau96I	GGNCC	5 cut(s)	125, 163, 194, 263, 320
SchI	GAGTC	2 cut(s)	136, 197
ScrFI	CCNGG	1 cut(s)	16
SduI	GDGCHC	3 cut(s)	248, 308, 374
SfaNI	GCATC	1 cut(s)	323
SinI	GGWCC	4 cut(s)	163, 194, 263, 320
SsiI	CCGC	1 cut(s)	389
SspMI	CTAG	2 cut(s)	174, 249
StyD4I	CCNGG	1 cut(s)	14
StyI	CCWWGG	3 cut(s)	173, 248, 309
TaaI	ACNGT	1 cut(s)	324
TaiI	ACGT	1 cut(s)	435
TaqII	GACCGA	1 cut(s)	290
TatI	WGTACW	1 cut(s)	228
TseFI	GTSAC	3 cut(s)	271, 355, 403
TseI	GCWGC	1 cut(s)	293
Tsp45I	GTSAC	3 cut(s)	271, 355, 403
TspGWI	ACGGA	1 cut(s)	399
VpaK11BI	GGWCC	4 cut(s)	163, 194, 263, 320
XmaJI	CCTAGG	2 cut(s)	173, 248
XspI	CTAG	2 cut(s)	174, 249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.