Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030653.1

Orthogroup ID

OG0008824

Physical Location & Seq

Genomic Coordinates Reverse (-)

621 .. 1112

Gene Structure 492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030653.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

atgtcaccgtcccccaggcaagtagctgatcagccagagaagtatcaagagcattggagaggaagtctgctgaggaagccaaagggtcatgaggaggtcaaaactcggagcattgcgctatcggggccgttggatatgaggactcatgagaggttgatgatggtccctaaccctaggagcttgaagctatcaggacccttagactcaaaggtcaatcagaggctcatgtacacagcaaataggagccctaggctcacttcaggtcctatggtgaccgacaagctaatggttgcagcaaataggagccccaaggcatccggaccctacgatggaagatcatatgatcggctgatggtgacgaagaataggagcccgaggctgtccgaaccgcttgatggaaaagtcactccatatgagaaggaaagggtggacgttgattttgatgaccattcactttggactgctatgtttcaggatatgaaacccacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAM_2

Protein Analysis

163

Amino Acids

18.64

Weight (kDa)

9.83

Isoelectric Point (pI)

46.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008824)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01970
malus_domestica	MD02G1018000.v1.1 MD15G1161900.v1.1
prunus_persica	Prupe.7G257100_v2.0.a1
pyrus_communis	pycom02g01600 pycom15g14550
rosa_chinensis	RchiOBHm_Chr2g0087001
rosa_laevigata	RLG00000002278 RLG00000015821
rosa_multiflora	Rmu_sc0010698.1_g000001 Rmu_sc0029090.1_g000001 Rmu_sc0030653.1_g000001
rosa_roxburghii	Rroxscaffold_2G00153970
rosa_rugosa	Rorug01G0471400 Rorug07G0186800
rosa_samantha	Rh2AG024200 Rh2BG024700 Rh2CG024800 Rh2DG024700 Rh7AG330800 Rh7BG320500
rosa_wichuraiana	Rw2G001900 Rw2G001950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	209
AccIII	TCCGGA	1 cut(s)	317
AciI	CCGC	1 cut(s)	389
AcuI	CTGAAG	1 cut(s)	243
AfaI	GTAC	1 cut(s)	230
AfiI	CCNNNNNNNGG	2 cut(s)	329, 395
AgsI	TTSAA	1 cut(s)	184
AjnI	CCWGG	1 cut(s)	14
AluBI	AGCT	4 cut(s)	26, 180, 187, 283
AluI	AGCT	4 cut(s)	26, 180, 187, 283
Ama87I	CYCGRG	1 cut(s)	373
Aor13HI	TCCGGA	1 cut(s)	317
AoxI	GGCC	1 cut(s)	125
ApeKI	GCWGC	1 cut(s)	293
ArsI	GACNNNNNNTTYG	2 cut(s)	422, 454
AspA2I	CCTAGG	2 cut(s)	173, 248
AspLEI	GCGC	1 cut(s)	118
AspS9I	GGNCC	5 cut(s)	125, 163, 194, 263, 320
AsuHPI	GGTGA	2 cut(s)	283, 367
AvaI	CYCGRG	1 cut(s)	373
AvaII	GGWCC	4 cut(s)	163, 194, 263, 320
AvrII	CCTAGG	2 cut(s)	173, 248
BanII	GRGCYC	3 cut(s)	248, 308, 374
BbvCI	CCTCAGC	1 cut(s)	71
BbvI	GCAGC	1 cut(s)	305
BccI	CCATC	4 cut(s)	154, 323, 346, 389
BceAI	ACGGC	1 cut(s)	112
BciT130I	CCWGG	1 cut(s)	16
BclI	TGATCA	1 cut(s)	28
BfaI	CTAG	2 cut(s)	174, 249
BisI	GCNGC	1 cut(s)	294
BlnI	CCTAGG	2 cut(s)	173, 248
BlsI	GCNGC	1 cut(s)	295
Bme1390I	CCNGG	1 cut(s)	16
Bme18I	GGWCC	4 cut(s)	163, 194, 263, 320
BmeT110I	CYCGRG	1 cut(s)	373
BmgT120I	GGNCC	5 cut(s)	125, 163, 194, 263, 320
BmiI	GGNNCC	7 cut(s)	126, 165, 196, 245, 305, 322, 371
BmrFI	CCNGG	1 cut(s)	16
BmsI	GCATC	1 cut(s)	323
Bpu10I	CCTNAGC	1 cut(s)	71
BsaJI	CCNNGG	5 cut(s)	14, 173, 248, 309, 374
BsaWI	WCCGGW	1 cut(s)	317
BsaXI	ACNNNNNCTCC	2 cut(s)	49, 79
Bsc4I	CCNNNNNNNGG	2 cut(s)	329, 395
Bse3DI	GCAATG	1 cut(s)	111
BseAI	TCCGGA	1 cut(s)	317
BseBI	CCWGG	1 cut(s)	16
BseDI	CCNNGG	5 cut(s)	14, 173, 248, 309, 374
BseGI	GGATG	1 cut(s)	314
BseLI	CCNNNNNNNGG	2 cut(s)	329, 395
BseMI	GCAATG	1 cut(s)	111
BseMII	CTCAG	1 cut(s)	62
BseRI	GAGGAG	1 cut(s)	107
BseXI	GCAGC	1 cut(s)	305
BshFI	GGCC	1 cut(s)	127
BsiHKCI	CYCGRG	1 cut(s)	373
BsiSI	CCGG	1 cut(s)	318
BslFI	GGGAC	1 cut(s)	149
BslI	CCNNNNNNNGG	2 cut(s)	329, 395
BsmFI	GGGAC	1 cut(s)	149
BsnI	GGCC	1 cut(s)	127
BsoBI	CYCGRG	1 cut(s)	373
Bsp1286I	GDGCHC	3 cut(s)	248, 308, 374
Bsp13I	TCCGGA	1 cut(s)	317
Bsp1407I	TGTACA	1 cut(s)	228
Bsp143I	GATC	3 cut(s)	28, 335, 343
BspACI	CCGC	1 cut(s)	389
BspANI	GGCC	1 cut(s)	127
BspCNI	CTCAG	1 cut(s)	63
BspEI	TCCGGA	1 cut(s)	317
BspHI	TCATGA	2 cut(s)	88, 145
BspLI	GGNNCC	7 cut(s)	126, 165, 196, 245, 305, 322, 371
BsrDI	GCAATG	1 cut(s)	111
BsrGI	TGTACA	1 cut(s)	228
BssECI	CCNNGG	5 cut(s)	14, 173, 248, 309, 374
BssMI	GATC	3 cut(s)	28, 335, 343
BssT1I	CCWWGG	3 cut(s)	173, 248, 309
Bst2UI	CCWGG	1 cut(s)	16
Bst4CI	ACNGT	1 cut(s)	9
BstAUI	TGTACA	1 cut(s)	228
BstDEI	CTNAG	2 cut(s)	71, 199
BstEII	GGTNACC	1 cut(s)	271
BstF5I	GGATG	1 cut(s)	314
BstHHI	GCGC	1 cut(s)	118
BstKTI	GATC	3 cut(s)	31, 338, 346
BstMBI	GATC	3 cut(s)	28, 335, 343
BstMWI	GCNNNNNNNGC	2 cut(s)	76, 124
BstNI	CCWGG	1 cut(s)	16
BstPI	GGTNACC	1 cut(s)	271
BstSCI	CCNGG	1 cut(s)	14
BstV1I	GCAGC	1 cut(s)	305
BsuRI	GGCC	1 cut(s)	127
BtsCI	GGATG	1 cut(s)	314
CciI	TCATGA	2 cut(s)	88, 145
CfoI	GCGC	1 cut(s)	118
Cfr13I	GGNCC	5 cut(s)	125, 163, 194, 263, 320
Csp6I	GTAC	1 cut(s)	229
CviAII	CATG	3 cut(s)	89, 146, 226
CviQI	GTAC	1 cut(s)	229
DdeI	CTNAG	2 cut(s)	71, 199
DpnI	GATC	3 cut(s)	30, 337, 345
DpnII	GATC	3 cut(s)	28, 335, 343
DrdI	GACNNNNNNGTC	1 cut(s)	209
DseDI	GACNNNNNNGTC	1 cut(s)	209
Eco130I	CCWWGG	3 cut(s)	173, 248, 309
Eco24I	GRGCYC	3 cut(s)	248, 308, 374
Eco47I	GGWCC	4 cut(s)	163, 194, 263, 320
Eco57I	CTGAAG	1 cut(s)	243
Eco88I	CYCGRG	1 cut(s)	373
Eco91I	GGTNACC	1 cut(s)	271
EcoO109I	RGGNCCY	2 cut(s)	194, 263
EcoO65I	GGTNACC	1 cut(s)	271
EcoRII	CCWGG	1 cut(s)	14
EcoT14I	CCWWGG	3 cut(s)	173, 248, 309
EcoT38I	GRGCYC	3 cut(s)	248, 308, 374
ErhI	CCWWGG	3 cut(s)	173, 248, 309
FaeI	CATG	3 cut(s)	92, 149, 229
FaqI	GGGAC	1 cut(s)	149
FatI	CATG	3 cut(s)	88, 145, 225
FauNDI	CATATG	2 cut(s)	340, 412
FbaI	TGATCA	1 cut(s)	28
Fnu4HI	GCNGC	1 cut(s)	294
FokI	GGATG	1 cut(s)	301
FriOI	GRGCYC	3 cut(s)	248, 308, 374
Fsp4HI	GCNGC	1 cut(s)	294
FspBI	CTAG	2 cut(s)	174, 249
GlaI	GCGC	1 cut(s)	117
GluI	GCNGC	1 cut(s)	294
HaeIII	GGCC	1 cut(s)	127
HapII	CCGG	1 cut(s)	318
HhaI	GCGC	1 cut(s)	118
Hin1II	CATG	3 cut(s)	92, 149, 229
Hin6I	GCGC	1 cut(s)	116
HinP1I	GCGC	1 cut(s)	116
HinfI	GANTC	2 cut(s)	142, 203
HpaII	CCGG	1 cut(s)	318
HphI	GGTGA	2 cut(s)	283, 367
Hpy166II	GTNNAC	2 cut(s)	231, 430
Hpy188I	TCNGA	3 cut(s)	108, 219, 385
Hpy188III	TCNNGA	6 cut(s)	47, 89, 146, 192, 318, 473
Hpy8I	GTNNAC	2 cut(s)	231, 430
HpyAV	CCTTC	1 cut(s)	412
HpyCH4III	ACNGT	1 cut(s)	9
HpyCH4IV	ACGT	1 cut(s)	432
HpyCH4V	TGCA	1 cut(s)	293
HpyF10VI	GCNNNNNNNGC	2 cut(s)	76, 124
HpyF3I	CTNAG	2 cut(s)	71, 199
HpySE526I	ACGT	1 cut(s)	432
Hsp92II	CATG	3 cut(s)	92, 149, 229
HspAI	GCGC	1 cut(s)	116
Kpn2I	TCCGGA	1 cut(s)	317
Ksp22I	TGATCA	1 cut(s)	28
Kzo9I	GATC	3 cut(s)	28, 335, 343
LmnI	GCTCC	5 cut(s)	108, 177, 243, 303, 369
LpnPI	CCDG	6 cut(s)	28, 48, 177, 246, 331, 458
Lsp1109I	GCAGC	1 cut(s)	305
LweI	GCATC	1 cut(s)	323
MaeI	CTAG	2 cut(s)	174, 249
MaeII	ACGT	1 cut(s)	432
MaeIII	GTNAC	4 cut(s)	3, 271, 355, 403
MalI	GATC	3 cut(s)	30, 337, 345
MboI	GATC	3 cut(s)	28, 335, 343
MboII	GAAGA	2 cut(s)	345, 373
MhlI	GDGCHC	3 cut(s)	248, 308, 374
MlyI	GAGTC	2 cut(s)	136, 197
MmeI	TCCRAC	1 cut(s)	111
MnlI	CCTC	8 cut(s)	53, 66, 85, 88, 132, 144, 213, 369
MroI	TCCGGA	1 cut(s)	317
MspI	CCGG	1 cut(s)	318
MspR9I	CCNGG	1 cut(s)	16
MvaI	CCWGG	1 cut(s)	16
MwoI	GCNNNNNNNGC	2 cut(s)	76, 124
NdeI	CATATG	2 cut(s)	340, 412
NdeII	GATC	3 cut(s)	28, 335, 343
NlaIII	CATG	3 cut(s)	92, 149, 229
NlaIV	GGNNCC	7 cut(s)	126, 165, 196, 245, 305, 322, 371
NmuCI	GTSAC	4 cut(s)	3, 271, 355, 403
PagI	TCATGA	2 cut(s)	88, 145
PkrI	GCNGC	1 cut(s)	295
PleI	GAGTC	2 cut(s)	136, 197
PpsI	GAGTC	2 cut(s)	136, 197
PpuMI	RGGWCCY	2 cut(s)	194, 263
Psp5II	RGGWCCY	2 cut(s)	194, 263
Psp6I	CCWGG	1 cut(s)	14
PspEI	GGTNACC	1 cut(s)	271
PspGI	CCWGG	1 cut(s)	14
PspN4I	GGNNCC	7 cut(s)	126, 165, 196, 245, 305, 322, 371
PspPI	GGNCC	5 cut(s)	125, 163, 194, 263, 320
PspPPI	RGGWCCY	2 cut(s)	194, 263
RsaI	GTAC	1 cut(s)	230
RsaNI	GTAC	1 cut(s)	229
SatI	GCNGC	1 cut(s)	294
Sau3AI	GATC	3 cut(s)	28, 335, 343
Sau96I	GGNCC	5 cut(s)	125, 163, 194, 263, 320
SchI	GAGTC	2 cut(s)	136, 197
ScrFI	CCNGG	1 cut(s)	16
SduI	GDGCHC	3 cut(s)	248, 308, 374
SetI	ASST	9 cut(s)	28, 99, 155, 182, 189, 213, 265, 285, 435
SfaNI	GCATC	1 cut(s)	323
SinI	GGWCC	4 cut(s)	163, 194, 263, 320
SsiI	CCGC	1 cut(s)	389
SspMI	CTAG	2 cut(s)	174, 249
StyD4I	CCNGG	1 cut(s)	14
StyI	CCWWGG	3 cut(s)	173, 248, 309
TaaI	ACNGT	1 cut(s)	9
TaiI	ACGT	1 cut(s)	435
TaqII	GACCGA	1 cut(s)	290
TatI	WGTACW	1 cut(s)	228
TseFI	GTSAC	4 cut(s)	3, 271, 355, 403
TseI	GCWGC	1 cut(s)	293
Tsp45I	GTSAC	4 cut(s)	3, 271, 355, 403
VpaK11BI	GGWCC	4 cut(s)	163, 194, 263, 320
XmaJI	CCTAGG	2 cut(s)	173, 248
XspI	CTAG	2 cut(s)	174, 249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.