Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0008824

Physical Location & Seq

Genomic Coordinates Reverse (-)

1657225 .. 1658034

Gene Structure 810 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015821

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGACTGGTTCGCATGGCTGTCGAAAACCGGCCTTGAACCAAGCCTTGTCTATGAGTACGGCATCATCTTCTCTCGCAACGAGCTTCAAATGGAGGACGTTGCTTTCTTCAACCATGAGTTCCTGCTGAGCATGGGAGTTTCTGTGGCCAAGCACAGGCTAGAGATTCTCAAGCTTGCCAAGAAGGAAAACGAGGGTGGTGGCGGTGGTGGTCACCGCCACCACCCAGGGTCAATTTCAAGGCTCGGCTGGGCGCTTATCAAAACCAAGAAGTGTTTCAGCAAGTACTTTACAAGATTGGCTTTCCAAGAGAACGACATGTCATCGTCCCCCAGGCATGTAGCTGATCAGCCAGAGAAGTATCAAGAGCATTGGAGAGGAAGTCTGTTGAGGAAGCCAAAGGGTCATGAGGAGGTCAAAACTCGGAGCATTGCGCTATCGGGGCCGTTGGATATGAGGACTCGTGAGAGGTTGATGATGGTCCCTAACCCTAGGAGCTTGAAGCTATCAGGACCCTTAGACTCAAAGGTCAATGAAAGGCTCATGTACACAGCAAATAGGAGCCCTAGGCTCACTTCAGGTCCTATGGTGACCGACAAGCTAATGGTTGCAGCAAATAGGAGCCCCAAGGCATCCGGACCGTACGATGGACGATCATATGATCGGCTGATGGTGACGAAGAATAGAAGCCCGAGGCTGTCCGGACCGCTTGATGGAAGAGTCACTCCATATGAGAAGGAAAGAGTGGACGTTCACTTTGATGACCATTCACTTTGGACTGCTATGTTTCAGGATATGAAACCCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAM_2

Protein Analysis

270

Amino Acids

30.76

Weight (kDa)

9.75

Isoelectric Point (pI)

39.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008824)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01970
malus_domestica	MD02G1018000.v1.1 MD15G1161900.v1.1
prunus_persica	Prupe.7G257100_v2.0.a1
pyrus_communis	pycom02g01600 pycom15g14550
rosa_chinensis	RchiOBHm_Chr2g0087001
rosa_laevigata	RLG00000002278 RLG00000015821
rosa_multiflora	Rmu_sc0010698.1_g000001 Rmu_sc0029090.1_g000001 Rmu_sc0030653.1_g000001
rosa_roxburghii	Rroxscaffold_2G00153970
rosa_rugosa	Rorug01G0471400 Rorug07G0186800
rosa_samantha	Rh2AG024200 Rh2BG024700 Rh2CG024800 Rh2DG024700 Rh7AG330800 Rh7BG320500
rosa_wichuraiana	Rw2G001900 Rw2G001950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	527
AccIII	TCCGGA	2 cut(s)	635, 701
AciI	CCGC	3 cut(s)	204, 217, 707
AcoI	YGGCCR	1 cut(s)	147
AcuI	CTGAAG	1 cut(s)	561
AfaI	GTAC	4 cut(s)	59, 287, 548, 644
AfiI	CCNNNNNNNGG	3 cut(s)	156, 647, 713
AflIII	ACRYGT	1 cut(s)	318
AgsI	TTSAA	5 cut(s)	38, 89, 112, 240, 502
AjnI	CCWGG	2 cut(s)	226, 332
AjuI	GAANNNNNNNTTGG	2 cut(s)	260, 292
AluBI	AGCT	6 cut(s)	85, 175, 344, 498, 505, 601
AluI	AGCT	6 cut(s)	85, 175, 344, 498, 505, 601
Ama87I	CYCGRG	1 cut(s)	691
Aor13HI	TCCGGA	2 cut(s)	635, 701
AoxI	GGCC	3 cut(s)	31, 147, 443
ApeKI	GCWGC	1 cut(s)	611
ArsI	GACNNNNNNTTYG	2 cut(s)	740, 772
Asp700I	GAANNNNTTC	1 cut(s)	275
AspA2I	CCTAGG	2 cut(s)	491, 566
AspLEI	GCGC	2 cut(s)	256, 436
AspS9I	GGNCC	6 cut(s)	443, 481, 512, 581, 638, 704
AsuHPI	GGTGA	3 cut(s)	206, 601, 685
AvaI	CYCGRG	1 cut(s)	691
AvaII	GGWCC	5 cut(s)	481, 512, 581, 638, 704
AvrII	CCTAGG	2 cut(s)	491, 566
BalI	TGGCCA	1 cut(s)	149
BanII	GRGCYC	2 cut(s)	566, 626
BauI	CACGAG	1 cut(s)	462
BbvI	GCAGC	1 cut(s)	623
BccI	CCATC	4 cut(s)	472, 641, 664, 707
BceAI	ACGGC	2 cut(s)	76, 430
BcgI	CGANNNNNNTGC	1 cut(s)	37
BciT130I	CCWGG	2 cut(s)	228, 334
BclI	TGATCA	1 cut(s)	346
BfaI	CTAG	3 cut(s)	161, 492, 567
BfoI	RGCGCY	1 cut(s)	257
BisI	GCNGC	1 cut(s)	612
BlnI	CCTAGG	2 cut(s)	491, 566
BlpI	GCTNAGC	1 cut(s)	128
BlsI	GCNGC	1 cut(s)	613
BmcAI	AGTACT	1 cut(s)	287
Bme1390I	CCNGG	2 cut(s)	228, 334
Bme18I	GGWCC	5 cut(s)	481, 512, 581, 638, 704
BmeT110I	CYCGRG	1 cut(s)	691
BmgT120I	GGNCC	6 cut(s)	443, 481, 512, 581, 638, 704
BmiI	GGNNCC	5 cut(s)	444, 483, 514, 563, 623
BmrFI	CCNGG	2 cut(s)	228, 334
BmsI	GCATC	2 cut(s)	72, 641
Bpu1102I	GCTNAGC	1 cut(s)	128
BpuEI	CTTGAG	1 cut(s)	155
BsaJI	CCNNGG	7 cut(s)	226, 227, 332, 491, 566, 627, 692
BsaWI	WCCGGW	2 cut(s)	635, 701
BsaXI	ACNNNNNCTCC	4 cut(s)	129, 159, 367, 397
Bsc4I	CCNNNNNNNGG	3 cut(s)	156, 647, 713
Bse118I	RCCGGY	1 cut(s)	29
Bse1I	ACTGG	1 cut(s)	11
Bse3DI	GCAATG	1 cut(s)	429
BseAI	TCCGGA	2 cut(s)	635, 701
BseBI	CCWGG	2 cut(s)	228, 334
BseDI	CCNNGG	7 cut(s)	226, 227, 332, 491, 566, 627, 692
BseGI	GGATG	1 cut(s)	632
BseLI	CCNNNNNNNGG	3 cut(s)	156, 647, 713
BseMI	GCAATG	1 cut(s)	429
BseMII	CTCAG	1 cut(s)	119
BseNI	ACTGG	1 cut(s)	11
BseRI	GAGGAG	1 cut(s)	425
BseXI	GCAGC	1 cut(s)	623
BseYI	CCCAGC	1 cut(s)	249
BshFI	GGCC	3 cut(s)	33, 149, 445
BsiHKCI	CYCGRG	1 cut(s)	691
BsiSI	CCGG	3 cut(s)	30, 636, 702
BsiWI	CGTACG	1 cut(s)	642
BslFI	GGGAC	2 cut(s)	313, 467
BslI	CCNNNNNNNGG	3 cut(s)	156, 647, 713
BsmFI	GGGAC	2 cut(s)	313, 467
BsnI	GGCC	3 cut(s)	33, 149, 445
BsoBI	CYCGRG	1 cut(s)	691
Bsp1286I	GDGCHC	2 cut(s)	566, 626
Bsp13I	TCCGGA	2 cut(s)	635, 701
Bsp1407I	TGTACA	1 cut(s)	546
Bsp143I	GATC	3 cut(s)	346, 653, 661
Bsp1720I	GCTNAGC	1 cut(s)	128
BspACI	CCGC	3 cut(s)	204, 217, 707
BspANI	GGCC	3 cut(s)	33, 149, 445
BspCNI	CTCAG	1 cut(s)	120
BspEI	TCCGGA	2 cut(s)	635, 701
BspHI	TCATGA	1 cut(s)	406
BspLI	GGNNCC	5 cut(s)	444, 483, 514, 563, 623
BsrDI	GCAATG	1 cut(s)	429
BsrFI	RCCGGY	1 cut(s)	29
BsrGI	TGTACA	1 cut(s)	546
BsrI	ACTGG	1 cut(s)	11
BssAI	RCCGGY	1 cut(s)	29
BssECI	CCNNGG	7 cut(s)	226, 227, 332, 491, 566, 627, 692
BssMI	GATC	3 cut(s)	346, 653, 661
BssSI	CACGAG	1 cut(s)	462
BssT1I	CCWWGG	3 cut(s)	491, 566, 627
Bst2BI	CACGAG	1 cut(s)	462
Bst2UI	CCWGG	2 cut(s)	228, 334
Bst4CI	ACNGT	1 cut(s)	642
Bst6I	CTCTTC	1 cut(s)	712
BstAUI	TGTACA	1 cut(s)	546
BstC8I	GCNNGC	1 cut(s)	177
BstDEI	CTNAG	2 cut(s)	128, 517
BstEII	GGTNACC	2 cut(s)	212, 589
BstF5I	GGATG	1 cut(s)	632
BstH2I	RGCGCY	1 cut(s)	257
BstHHI	GCGC	2 cut(s)	256, 436
BstKTI	GATC	3 cut(s)	349, 656, 664
BstMBI	GATC	3 cut(s)	346, 653, 661
BstMWI	GCNNNNNNNGC	1 cut(s)	442
BstNI	CCWGG	2 cut(s)	228, 334
BstNSI	RCATGY	2 cut(s)	322, 341
BstPI	GGTNACC	2 cut(s)	212, 589
BstSCI	CCNGG	2 cut(s)	226, 332
BstV1I	GCAGC	1 cut(s)	623
BsuRI	GGCC	3 cut(s)	33, 149, 445
BtsCI	GGATG	1 cut(s)	632
Cac8I	GCNNGC	1 cut(s)	177
CciI	TCATGA	1 cut(s)	406
CfoI	GCGC	2 cut(s)	256, 436
Cfr10I	RCCGGY	1 cut(s)	29
Cfr13I	GGNCC	6 cut(s)	443, 481, 512, 581, 638, 704
CpoI	CGGWCCG	2 cut(s)	638, 704
Csp6I	GTAC	4 cut(s)	58, 286, 547, 643
CspI	CGGWCCG	2 cut(s)	638, 704
CviAII	CATG	7 cut(s)	15, 116, 133, 319, 338, 407, 544
CviQI	GTAC	4 cut(s)	58, 286, 547, 643
DdeI	CTNAG	2 cut(s)	128, 517
DpnI	GATC	3 cut(s)	348, 655, 663
DpnII	GATC	3 cut(s)	346, 653, 661
DrdI	GACNNNNNNGTC	1 cut(s)	527
DseDI	GACNNNNNNGTC	1 cut(s)	527
EaeI	YGGCCR	1 cut(s)	147
Eam1104I	CTCTTC	1 cut(s)	712
EarI	CTCTTC	1 cut(s)	712
Eco130I	CCWWGG	3 cut(s)	491, 566, 627
Eco24I	GRGCYC	2 cut(s)	566, 626
Eco47I	GGWCC	5 cut(s)	481, 512, 581, 638, 704
Eco57I	CTGAAG	1 cut(s)	561
Eco88I	CYCGRG	1 cut(s)	691
Eco91I	GGTNACC	2 cut(s)	212, 589
EcoO109I	RGGNCCY	2 cut(s)	512, 581
EcoO65I	GGTNACC	2 cut(s)	212, 589
EcoRII	CCWGG	2 cut(s)	226, 332
EcoT14I	CCWWGG	3 cut(s)	491, 566, 627
EcoT38I	GRGCYC	2 cut(s)	566, 626
ErhI	CCWWGG	3 cut(s)	491, 566, 627
FaeI	CATG	7 cut(s)	18, 119, 136, 322, 341, 410, 547
FalI	AAGNNNNNCTT	2 cut(s)	286, 318
FaqI	GGGAC	2 cut(s)	313, 467
FatI	CATG	7 cut(s)	14, 115, 132, 318, 337, 406, 543
FauNDI	CATATG	2 cut(s)	658, 730
FbaI	TGATCA	1 cut(s)	346
Fnu4HI	GCNGC	1 cut(s)	612
FokI	GGATG	1 cut(s)	619
FriOI	GRGCYC	2 cut(s)	566, 626
Fsp4HI	GCNGC	1 cut(s)	612
FspBI	CTAG	3 cut(s)	161, 492, 567
GlaI	GCGC	2 cut(s)	255, 435
GluI	GCNGC	1 cut(s)	612
GsaI	CCCAGC	1 cut(s)	253
HaeII	RGCGCY	1 cut(s)	257
HaeIII	GGCC	3 cut(s)	33, 149, 445
HapII	CCGG	3 cut(s)	30, 636, 702
HhaI	GCGC	2 cut(s)	256, 436
Hin1II	CATG	7 cut(s)	18, 119, 136, 322, 341, 410, 547
Hin6I	GCGC	2 cut(s)	254, 434
HinP1I	GCGC	2 cut(s)	254, 434
HindIII	AAGCTT	1 cut(s)	173
HinfI	GANTC	4 cut(s)	166, 460, 521, 720
HpaII	CCGG	3 cut(s)	30, 636, 702
HphI	GGTGA	3 cut(s)	206, 601, 685
Hpy166II	GTNNAC	3 cut(s)	549, 748, 754
Hpy188I	TCNGA	1 cut(s)	426
Hpy188III	TCNNGA	7 cut(s)	365, 407, 464, 510, 636, 702, 791
Hpy8I	GTNNAC	3 cut(s)	549, 748, 754
HpyAV	CCTTC	2 cut(s)	178, 730
HpyCH4III	ACNGT	1 cut(s)	642
HpyCH4IV	ACGT	2 cut(s)	99, 750
HpyCH4V	TGCA	1 cut(s)	611
HpyF10VI	GCNNNNNNNGC	1 cut(s)	442
HpyF3I	CTNAG	2 cut(s)	128, 517
HpySE526I	ACGT	2 cut(s)	99, 750
Hsp92II	CATG	7 cut(s)	18, 119, 136, 322, 341, 410, 547
HspAI	GCGC	2 cut(s)	254, 434
Kpn2I	TCCGGA	2 cut(s)	635, 701
Ksp22I	TGATCA	1 cut(s)	346
Kzo9I	GATC	3 cut(s)	346, 653, 661
LmnI	GCTCC	4 cut(s)	426, 495, 561, 621
Lsp1109I	GCAGC	1 cut(s)	623
LweI	GCATC	2 cut(s)	72, 641
MaeI	CTAG	3 cut(s)	161, 492, 567
MaeII	ACGT	2 cut(s)	99, 750
MaeIII	GTNAC	4 cut(s)	212, 589, 673, 721
MalI	GATC	3 cut(s)	348, 655, 663
MboI	GATC	3 cut(s)	346, 653, 661
MboII	GAAGA	4 cut(s)	61, 100, 691, 729
MhlI	GDGCHC	2 cut(s)	566, 626
MlsI	TGGCCA	1 cut(s)	149
MluCI	AATT	1 cut(s)	234
MluNI	TGGCCA	1 cut(s)	149
MlyI	GAGTC	3 cut(s)	454, 515, 729
MmeI	TCCRAC	1 cut(s)	429
MnlI	CCTC	9 cut(s)	88, 187, 371, 384, 403, 406, 450, 462, 687
Mox20I	TGGCCA	1 cut(s)	149
MroI	TCCGGA	2 cut(s)	635, 701
MroXI	GAANNNNTTC	1 cut(s)	275
MscI	TGGCCA	1 cut(s)	149
MslI	CAYNNNNRTG	1 cut(s)	759
Msp20I	TGGCCA	1 cut(s)	149
MspI	CCGG	3 cut(s)	30, 636, 702
MspR9I	CCNGG	2 cut(s)	228, 334
MvaI	CCWGG	2 cut(s)	228, 334
MwoI	GCNNNNNNNGC	1 cut(s)	442
NdeI	CATATG	2 cut(s)	658, 730
NdeII	GATC	3 cut(s)	346, 653, 661
NlaIII	CATG	7 cut(s)	18, 119, 136, 322, 341, 410, 547
NlaIV	GGNNCC	5 cut(s)	444, 483, 514, 563, 623
NmeAIII	GCCGAG	1 cut(s)	225
NmuCI	GTSAC	4 cut(s)	212, 589, 673, 721
NspI	RCATGY	2 cut(s)	322, 341
PagI	TCATGA	1 cut(s)	406
PasI	CCCWGGG	1 cut(s)	227
PciI	ACATGT	1 cut(s)	318
PdmI	GAANNNNTTC	1 cut(s)	275
PfeI	GAWTC	1 cut(s)	166
Pfl23II	CGTACG	1 cut(s)	642
PkrI	GCNGC	1 cut(s)	613
PleI	GAGTC	3 cut(s)	454, 515, 728
PpsI	GAGTC	3 cut(s)	454, 515, 728
PpuMI	RGGWCCY	2 cut(s)	512, 581
PscI	ACATGT	1 cut(s)	318
Psp5II	RGGWCCY	2 cut(s)	512, 581
Psp6I	CCWGG	2 cut(s)	226, 332
PspEI	GGTNACC	2 cut(s)	212, 589
PspFI	CCCAGC	1 cut(s)	249
PspGI	CCWGG	2 cut(s)	226, 332
PspLI	CGTACG	1 cut(s)	642
PspN4I	GGNNCC	5 cut(s)	444, 483, 514, 563, 623
PspPI	GGNCC	6 cut(s)	443, 481, 512, 581, 638, 704
PspPPI	RGGWCCY	2 cut(s)	512, 581
RsaI	GTAC	4 cut(s)	59, 287, 548, 644
RsaNI	GTAC	4 cut(s)	58, 286, 547, 643
RseI	CAYNNNNRTG	1 cut(s)	759
Rsr2I	CGGWCCG	2 cut(s)	638, 704
RsrII	CGGWCCG	2 cut(s)	638, 704
SatI	GCNGC	1 cut(s)	612
Sau3AI	GATC	3 cut(s)	346, 653, 661
Sau96I	GGNCC	6 cut(s)	443, 481, 512, 581, 638, 704
ScaI	AGTACT	1 cut(s)	287
SchI	GAGTC	3 cut(s)	454, 515, 729
ScrFI	CCNGG	2 cut(s)	228, 334
SduI	GDGCHC	2 cut(s)	566, 626
SfaNI	GCATC	2 cut(s)	72, 641
SinI	GGWCC	5 cut(s)	481, 512, 581, 638, 704
SmiMI	CAYNNNNRTG	1 cut(s)	759
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
Sse9I	AATT	1 cut(s)	234
SsiI	CCGC	3 cut(s)	204, 217, 707
SspMI	CTAG	3 cut(s)	161, 492, 567
StyD4I	CCNGG	2 cut(s)	226, 332
StyI	CCWWGG	3 cut(s)	491, 566, 627
TaaI	ACNGT	1 cut(s)	642
TaiI	ACGT	2 cut(s)	102, 753
TaqI	TCGA	1 cut(s)	23
TaqII	GACCGA	1 cut(s)	608
TasI	AATT	1 cut(s)	234
TatI	WGTACW	2 cut(s)	285, 546
TfiI	GAWTC	1 cut(s)	166
TseFI	GTSAC	4 cut(s)	212, 589, 673, 721
TseI	GCWGC	1 cut(s)	611
Tsp45I	GTSAC	4 cut(s)	212, 589, 673, 721
TspDTI	ATGAA	1 cut(s)	549
VpaK11BI	GGWCC	5 cut(s)	481, 512, 581, 638, 704
XceI	RCATGY	2 cut(s)	322, 341
XmaJI	CCTAGG	2 cut(s)	491, 566
XmnI	GAANNNNTTC	1 cut(s)	275
XspI	CTAG	3 cut(s)	161, 492, 567
ZrmI	AGTACT	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.