Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0008824

Physical Location & Seq

Genomic Coordinates Reverse (-)

961976 .. 962773

Gene Structure 798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g01600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGACTGGTTCACATGGCTGTCAAAAACCGGCCTTGAACCCTCCCTCATCTACGACTACGGCGTCGTCTTTACGCGCAACCAGCTGCAGCTCGACGACGTGAGCTACTTCGACCATGAGTTCTTGCAGAGCATGGGAATATCTGTAGCCAAGCATAGGCTAGAGATACTCAAGCTTGCCAAGAAAGAAACCAGATTAGGGCACCCGAAGTCGCTTTCCCGGCTAAGTTGGGCGCTCATTCGGACCAAGAAGTGCTTCTCCAAGTACTTTAACAAGTTGGTTTTTCAGGAGGAGTCTTTCGACGGTAGGGGTGCAACTCCGGCAACACCAACTCGATATCAAGAGCATTGGAGAGGAGCTTTGTTGAGGAAGCACAAGAGTTGTAGTGAGGAGGTCAAGGATGAGAAGCCTATGGTTGTTAAGACTAGGAGTTTTGCACTTTCTGGGCCGTTGGATGGGAGAGTACAGGAGAGATTGATGGCTCATAATAATCCAACCTTAAAGCTATCTGGACCGTTGGATGGGAAGGTTCACGAGAGGTTAATGTACACAAATAAAAGCCCAAGGCTGACCGGTCCTTCGGTCGCAAGTTTGAGTCCCAAGTTATCTGGACCGTTGGATGGAAAAACGCATGAGAGGATCATGACCACAAACAAAAGTCCAAGATTTTCTGGGCAGTTGGAAGGGAGAGTTGTGAGCCCAAAGTTCTGCTCACCTTATGAGAAGGAAAGGGAGGATGTTGATTATGATGATCATTCACTCTGGACTGCACTGTTTCAGGATCTGAAACCAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAM_2

Protein Analysis

266

Amino Acids

30.4

Weight (kDa)

9.43

Isoelectric Point (pI)

35.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008824)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01970
malus_domestica	MD02G1018000.v1.1 MD15G1161900.v1.1
prunus_persica	Prupe.7G257100_v2.0.a1
pyrus_communis	pycom02g01600 pycom15g14550
rosa_chinensis	RchiOBHm_Chr2g0087001
rosa_laevigata	RLG00000002278 RLG00000015821
rosa_multiflora	Rmu_sc0010698.1_g000001 Rmu_sc0029090.1_g000001 Rmu_sc0030653.1_g000001
rosa_roxburghii	Rroxscaffold_2G00153970
rosa_rugosa	Rorug01G0471400 Rorug07G0186800
rosa_samantha	Rh2AG024200 Rh2BG024700 Rh2CG024800 Rh2DG024700 Rh7AG330800 Rh7BG320500
rosa_wichuraiana	Rw2G001900 Rw2G001950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	62
AccB1I	GGYRCC	1 cut(s)	201
AccII	CGCG	1 cut(s)	76
AclWI	GGATC	2 cut(s)	647, 789
AcyI	GRCGYC	1 cut(s)	63
AfaI	GTAC	3 cut(s)	266, 465, 548
AfiI	CCNNNNNNNGG	5 cut(s)	156, 198, 455, 521, 620
AgeI	ACCGGT	1 cut(s)	572
AgsI	TTSAA	1 cut(s)	38
AjiI	CACGTC	1 cut(s)	100
AjuI	GAANNNNNNNTTGG	2 cut(s)	239, 271
AluBI	AGCT	6 cut(s)	85, 91, 105, 175, 359, 505
AluI	AGCT	6 cut(s)	85, 91, 105, 175, 359, 505
AlwI	GGATC	2 cut(s)	647, 789
AlwNI	CAGNNNCTG	1 cut(s)	784
AoxI	GGCC	2 cut(s)	31, 446
ApeKI	GCWGC	2 cut(s)	85, 88
ArsI	GACNNNNNNTTYG	2 cut(s)	562, 594
AsiGI	ACCGGT	1 cut(s)	572
Asp700I	GAANNNNTTC	1 cut(s)	254
AspLEI	GCGC	2 cut(s)	78, 235
AspS9I	GGNCC	5 cut(s)	243, 446, 512, 575, 611
AsuC2I	CCSGG	1 cut(s)	220
AsuHPI	GGTGA	1 cut(s)	705
AvaII	GGWCC	4 cut(s)	243, 512, 575, 611
BaeGI	GKGCMC	1 cut(s)	204
BanI	GGYRCC	1 cut(s)	201
BanII	GRGCYC	1 cut(s)	701
BauI	CACGAG	1 cut(s)	533
BbvI	GCAGC	2 cut(s)	72, 100
BccI	CCATC	4 cut(s)	449, 472, 515, 614
BceAI	ACGGC	2 cut(s)	76, 433
BclI	TGATCA	1 cut(s)	751
BcnI	CCSGG	1 cut(s)	220
BfaI	CTAG	2 cut(s)	161, 426
BfmI	CTRYAG	2 cut(s)	86, 144
BfoI	RGCGCY	1 cut(s)	236
BisI	GCNGC	2 cut(s)	86, 89
BlsI	GCNGC	2 cut(s)	87, 90
BmcAI	AGTACT	1 cut(s)	266
Bme1390I	CCNGG	1 cut(s)	220
Bme18I	GGWCC	4 cut(s)	243, 512, 575, 611
BmgBI	CACGTC	1 cut(s)	100
BmgT120I	GGNCC	5 cut(s)	243, 446, 512, 575, 611
BmiI	GGNNCC	1 cut(s)	203
BmrFI	CCNGG	1 cut(s)	220
BpuEI	CTTGAG	1 cut(s)	155
BpuMI	CCSGG	1 cut(s)	220
BsaHI	GRCGYC	1 cut(s)	63
BsaJI	CCNNGG	1 cut(s)	563
BsaWI	WCCGGW	1 cut(s)	572
Bsc4I	CCNNNNNNNGG	5 cut(s)	156, 198, 455, 521, 620
Bse118I	RCCGGY	2 cut(s)	29, 572
Bse1I	ACTGG	1 cut(s)	11
BseDI	CCNNGG	1 cut(s)	563
BseGI	GGATG	5 cut(s)	406, 460, 526, 625, 742
BseLI	CCNNNNNNNGG	5 cut(s)	156, 198, 455, 521, 620
BseNI	ACTGG	1 cut(s)	11
BseRI	GAGGAG	3 cut(s)	305, 369, 404
BseSI	GKGCMC	1 cut(s)	204
BseXI	GCAGC	2 cut(s)	72, 100
BsgI	GTGCAG	1 cut(s)	753
Bsh1236I	CGCG	1 cut(s)	76
Bsh1285I	CGRYCG	1 cut(s)	585
BshFI	GGCC	2 cut(s)	33, 448
BshNI	GGYRCC	1 cut(s)	201
BshTI	ACCGGT	1 cut(s)	572
BsiEI	CGRYCG	1 cut(s)	585
BsiSI	CCGG	4 cut(s)	30, 220, 320, 573
BslFI	GGGAC	1 cut(s)	582
BslI	CCNNNNNNNGG	5 cut(s)	156, 198, 455, 521, 620
BsmFI	GGGAC	1 cut(s)	582
BsnI	GGCC	2 cut(s)	33, 448
Bsp1286I	GDGCHC	2 cut(s)	204, 701
Bsp1407I	TGTACA	1 cut(s)	546
Bsp143I	GATC	3 cut(s)	639, 751, 781
BspANI	GGCC	2 cut(s)	33, 448
BspFNI	CGCG	1 cut(s)	76
BspHI	TCATGA	1 cut(s)	642
BspLI	GGNNCC	1 cut(s)	203
BspMAI	CTGCAG	1 cut(s)	90
BspPI	GGATC	2 cut(s)	647, 789
BspT107I	GGYRCC	1 cut(s)	201
BsrFI	RCCGGY	2 cut(s)	29, 572
BsrGI	TGTACA	1 cut(s)	546
BsrI	ACTGG	1 cut(s)	11
BssAI	RCCGGY	2 cut(s)	29, 572
BssECI	CCNNGG	1 cut(s)	563
BssMI	GATC	3 cut(s)	639, 751, 781
BssNI	GRCGYC	1 cut(s)	63
BssSI	CACGAG	1 cut(s)	533
BssT1I	CCWWGG	1 cut(s)	563
Bst2BI	CACGAG	1 cut(s)	533
Bst4CI	ACNGT	4 cut(s)	305, 516, 615, 774
BstACI	GRCGYC	1 cut(s)	63
BstAUI	TGTACA	1 cut(s)	546
BstC8I	GCNNGC	1 cut(s)	177
BstDEI	CTNAG	1 cut(s)	224
BstF5I	GGATG	5 cut(s)	406, 460, 526, 625, 742
BstFNI	CGCG	1 cut(s)	76
BstH2I	RGCGCY	1 cut(s)	236
BstHHI	GCGC	2 cut(s)	78, 235
BstKTI	GATC	3 cut(s)	642, 754, 784
BstMBI	GATC	3 cut(s)	639, 751, 781
BstMCI	CGRYCG	1 cut(s)	585
BstMWI	GCNNNNNNNGC	3 cut(s)	82, 220, 320
BstSCI	CCNGG	1 cut(s)	218
BstSFI	CTRYAG	2 cut(s)	86, 144
BstSLI	GKGCMC	1 cut(s)	204
BstUI	CGCG	1 cut(s)	76
BstV1I	GCAGC	2 cut(s)	72, 100
BstX2I	RGATCY	1 cut(s)	781
BstYI	RGATCY	1 cut(s)	781
BsuRI	GGCC	2 cut(s)	33, 448
BtrI	CACGTC	1 cut(s)	100
BtsCI	GGATG	5 cut(s)	406, 460, 526, 625, 742
BtsIMutI	CAGTG	1 cut(s)	770
Cac8I	GCNNGC	1 cut(s)	177
CaiI	CAGNNNCTG	1 cut(s)	784
CciI	TCATGA	1 cut(s)	642
CfoI	GCGC	2 cut(s)	78, 235
Cfr10I	RCCGGY	2 cut(s)	29, 572
Cfr13I	GGNCC	5 cut(s)	243, 446, 512, 575, 611
CseI	GACGC	1 cut(s)	52
Csp6I	GTAC	3 cut(s)	265, 464, 547
CspAI	ACCGGT	1 cut(s)	572
CviAII	CATG	5 cut(s)	15, 116, 133, 632, 643
CviQI	GTAC	3 cut(s)	265, 464, 547
DdeI	CTNAG	1 cut(s)	224
DpnI	GATC	3 cut(s)	641, 753, 783
DpnII	GATC	3 cut(s)	639, 751, 781
DrdI	GACNNNNNNGTC	1 cut(s)	62
DseDI	GACNNNNNNGTC	1 cut(s)	62
Eco130I	CCWWGG	1 cut(s)	563
Eco24I	GRGCYC	1 cut(s)	701
Eco32I	GATATC	1 cut(s)	338
Eco47I	GGWCC	4 cut(s)	243, 512, 575, 611
EcoRV	GATATC	1 cut(s)	338
EcoT14I	CCWWGG	1 cut(s)	563
EcoT38I	GRGCYC	1 cut(s)	701
ErhI	CCWWGG	1 cut(s)	563
FaeI	CATG	5 cut(s)	18, 119, 136, 635, 646
FalI	AAGNNNNNCTT	2 cut(s)	239, 271
FaqI	GGGAC	1 cut(s)	582
FatI	CATG	5 cut(s)	14, 115, 132, 631, 642
FbaI	TGATCA	1 cut(s)	751
Fnu4HI	GCNGC	2 cut(s)	86, 89
FokI	GGATG	5 cut(s)	413, 467, 533, 632, 749
FriOI	GRGCYC	1 cut(s)	701
Fsp4HI	GCNGC	2 cut(s)	86, 89
FspBI	CTAG	2 cut(s)	161, 426
GlaI	GCGC	2 cut(s)	77, 234
GluI	GCNGC	2 cut(s)	86, 89
HaeII	RGCGCY	1 cut(s)	236
HaeIII	GGCC	2 cut(s)	33, 448
HapII	CCGG	4 cut(s)	30, 220, 320, 573
HgaI	GACGC	1 cut(s)	52
HhaI	GCGC	2 cut(s)	78, 235
Hin1I	GRCGYC	1 cut(s)	63
Hin1II	CATG	5 cut(s)	18, 119, 136, 635, 646
Hin6I	GCGC	2 cut(s)	76, 233
HinP1I	GCGC	2 cut(s)	76, 233
HindIII	AAGCTT	1 cut(s)	173
HinfI	GANTC	2 cut(s)	293, 595
HpaII	CCGG	4 cut(s)	30, 220, 320, 573
HphI	GGTGA	1 cut(s)	705
Hpy166II	GTNNAC	3 cut(s)	12, 532, 549
Hpy188I	TCNGA	2 cut(s)	243, 786
Hpy188III	TCNNGA	8 cut(s)	287, 341, 510, 533, 609, 643, 763, 779
Hpy8I	GTNNAC	3 cut(s)	12, 532, 549
Hpy99I	CGWCG	4 cut(s)	68, 98, 101, 305
HpyAV	CCTTC	4 cut(s)	520, 588, 677, 718
HpyCH4III	ACNGT	4 cut(s)	305, 516, 615, 774
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	5 cut(s)	88, 127, 314, 437, 770
HpyF10VI	GCNNNNNNNGC	3 cut(s)	82, 220, 320
HpyF3I	CTNAG	1 cut(s)	224
HpySE526I	ACGT	1 cut(s)	99
Hsp92I	GRCGYC	1 cut(s)	63
Hsp92II	CATG	5 cut(s)	18, 119, 136, 635, 646
HspAI	GCGC	2 cut(s)	76, 233
Ksp22I	TGATCA	1 cut(s)	751
Kzo9I	GATC	3 cut(s)	639, 751, 781
LmnI	GCTCC	1 cut(s)	356
Lsp1109I	GCAGC	2 cut(s)	72, 100
MaeI	CTAG	2 cut(s)	161, 426
MaeII	ACGT	1 cut(s)	99
MalI	GATC	3 cut(s)	641, 753, 783
MboI	GATC	3 cut(s)	639, 751, 781
MflI	RGATCY	1 cut(s)	781
MhlI	GDGCHC	2 cut(s)	204, 701
MlyI	GAGTC	2 cut(s)	302, 604
MmeI	TCCRAC	5 cut(s)	432, 498, 518, 597, 660
MroXI	GAANNNNTTC	1 cut(s)	254
MseI	TTAA	4 cut(s)	270, 420, 500, 542
MspA1I	CMGCKG	1 cut(s)	85
MspI	CCGG	4 cut(s)	30, 220, 320, 573
MspR9I	CCNGG	1 cut(s)	220
MvnI	CGCG	1 cut(s)	76
MwoI	GCNNNNNNNGC	3 cut(s)	82, 220, 320
NciI	CCSGG	1 cut(s)	220
NdeII	GATC	3 cut(s)	639, 751, 781
NlaIII	CATG	5 cut(s)	18, 119, 136, 635, 646
NlaIV	GGNNCC	1 cut(s)	203
PagI	TCATGA	1 cut(s)	642
PcsI	WCGNNNNNNNCGW	1 cut(s)	60
PdmI	GAANNNNTTC	1 cut(s)	254
PinAI	ACCGGT	1 cut(s)	572
PkrI	GCNGC	2 cut(s)	87, 90
PleI	GAGTC	2 cut(s)	301, 603
PpsI	GAGTC	2 cut(s)	301, 603
PspN4I	GGNNCC	1 cut(s)	203
PspPI	GGNCC	5 cut(s)	243, 446, 512, 575, 611
PstI	CTGCAG	1 cut(s)	90
PstNI	CAGNNNCTG	1 cut(s)	784
PsuI	RGATCY	1 cut(s)	781
PvuII	CAGCTG	1 cut(s)	85
RsaI	GTAC	3 cut(s)	266, 465, 548
RsaNI	GTAC	3 cut(s)	265, 464, 547
SaqAI	TTAA	4 cut(s)	270, 420, 500, 542
SatI	GCNGC	2 cut(s)	86, 89
Sau3AI	GATC	3 cut(s)	639, 751, 781
Sau96I	GGNCC	5 cut(s)	243, 446, 512, 575, 611
ScaI	AGTACT	1 cut(s)	266
SchI	GAGTC	2 cut(s)	302, 604
ScrFI	CCNGG	1 cut(s)	220
SduI	GDGCHC	2 cut(s)	204, 701
SfcI	CTRYAG	2 cut(s)	86, 144
SinI	GGWCC	4 cut(s)	243, 512, 575, 611
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
SspMI	CTAG	2 cut(s)	161, 426
StyD4I	CCNGG	1 cut(s)	218
StyI	CCWWGG	1 cut(s)	563
TaaI	ACNGT	4 cut(s)	305, 516, 615, 774
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	4 cut(s)	93, 111, 300, 334
TaqII	GACCGA	1 cut(s)	571
TatI	WGTACW	3 cut(s)	264, 463, 546
Tru1I	TTAA	4 cut(s)	270, 420, 500, 542
Tru9I	TTAA	4 cut(s)	270, 420, 500, 542
TscAI	CASTG	1 cut(s)	777
TseI	GCWGC	2 cut(s)	85, 88
TspRI	CASTG	1 cut(s)	777
VpaK11BI	GGWCC	4 cut(s)	243, 512, 575, 611
XmnI	GAANNNNTTC	1 cut(s)	254
XspI	CTAG	2 cut(s)	161, 426
ZrmI	AGTACT	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.