Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0008824

Physical Location & Seq

Genomic Coordinates Reverse (-)

1905154 .. 1906482

Gene Structure 1329 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG024800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGACAAATTTGTTGGGTCTCCCTTACTATGCAAAGCGATATCAACTTACCCACCACATTAAATTTTTATATTTATCATCATCTTCTTCTTTCTTATATCTCTTCCAAACTCTTAACACAGCCTCACATTGTCACAGAGCCATGGACTGGTTCGCATGGCTGTCGAAAACCAGCCTTGAACCAAGCCTTGTCTATGAGTACGGCATCATCTTCTCTCGCAACGAGCTTCAAATGGAGGACGTTGCTTTCTTCAACCATGAGTTTCTGCTGAGCATGGGAGTTTCTGTGGCCAAGCACAGGCTAGAGATACTCAAGCTTGCCAAGAAGGAAAACGAGGGTGGCGGCGGCGGCGGTCACCGCCACCACCCAAGGTCAATTTCAAGGCTCGGCTGGGTGCTCATCAAAACCAAGAAGTGTTTCAACAAGTACTTTACAAGATTGGCTTTCCAAGAGAACGACATGTCATCATCCCCCAGGCATGTAGCTGATCAGCCAGAGAAGTATCAAGAGCATTGGAGAGGAAGTCTGCTGAGGAAGCCAAAGGGTCATGAGGAGGTCAAAACTCGGAGCATTGCACTATCGGGGCCGTTGGATATGAGGACTCATGAGAGGTTGATGATGGTCCCTAACCCTAGGAACTTGAAGCTATCAGGACCCTTAGACTCAAAGGTCAATCAGAGGCTCATGTACACAGCAAATAGGAGCCCTAGGCTCACTTCAGGTCCTATGGTGACCGACAAGCTAATGGTTGCAGCAAATAGGAGCCCCAAGGCATCCGGACCGTACGATGGACGATCATATGATCGGCTGATGGTGACGAAGAATAGCAGCCCGAGGCTGTCCGAACCACTTGATGGAAAAGTCACTCCATATGAGAAGGAAAGGGTGGACGTTGATTTTGATGACCATTCACTTTGGACTGCTATGTTTCAGGATATGAAACCCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAM_2

Protein Analysis

316

Amino Acids

36.43

Weight (kDa)

9.66

Isoelectric Point (pI)

42.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008824)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01970
malus_domestica	MD02G1018000.v1.1 MD15G1161900.v1.1
prunus_persica	Prupe.7G257100_v2.0.a1
pyrus_communis	pycom02g01600 pycom15g14550
rosa_chinensis	RchiOBHm_Chr2g0087001
rosa_laevigata	RLG00000002278 RLG00000015821
rosa_multiflora	Rmu_sc0010698.1_g000001 Rmu_sc0029090.1_g000001 Rmu_sc0030653.1_g000001
rosa_roxburghii	Rroxscaffold_2G00153970
rosa_rugosa	Rorug01G0471400 Rorug07G0186800
rosa_samantha	Rh2AG024200 Rh2BG024700 Rh2CG024800 Rh2DG024700 Rh7AG330800 Rh7BG320500
rosa_wichuraiana	Rw2G001900 Rw2G001950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	668
AccB7I	CCANNNNNTGG	2 cut(s)	147, 854
AccIII	TCCGGA	1 cut(s)	776
AciI	CCGC	5 cut(s)	342, 345, 348, 351, 358
AcoI	YGGCCR	1 cut(s)	288
AcsI	RAATTY	2 cut(s)	7, 62
AcuI	CTGAAG	1 cut(s)	702
AfaI	GTAC	4 cut(s)	200, 428, 689, 785
AfiI	CCNNNNNNNGG	4 cut(s)	147, 297, 788, 854
AflIII	ACRYGT	1 cut(s)	459
AgsI	TTSAA	6 cut(s)	179, 230, 253, 381, 421, 643
AjnI	CCWGG	1 cut(s)	473
AjuI	GAANNNNNNNTTGG	4 cut(s)	361, 393, 401, 433
AluBI	AGCT	5 cut(s)	226, 316, 485, 646, 742
AluI	AGCT	5 cut(s)	226, 316, 485, 646, 742
Alw21I	GWGCWC	1 cut(s)	399
Alw26I	GTCTC	1 cut(s)	23
Ama87I	CYCGRG	1 cut(s)	832
Aor13HI	TCCGGA	1 cut(s)	776
AoxI	GGCC	2 cut(s)	288, 584
ApeKI	GCWGC	2 cut(s)	752, 828
ApoI	RAATTY	2 cut(s)	7, 62
ArsI	GACNNNNNNTTYG	2 cut(s)	881, 913
Asp700I	GAANNNNTTC	1 cut(s)	416
AspA2I	CCTAGG	2 cut(s)	632, 707
AspS9I	GGNCC	5 cut(s)	584, 622, 653, 722, 779
AsuHPI	GGTGA	3 cut(s)	347, 742, 826
AvaI	CYCGRG	1 cut(s)	832
AvaII	GGWCC	4 cut(s)	622, 653, 722, 779
AvrII	CCTAGG	2 cut(s)	632, 707
BalI	TGGCCA	1 cut(s)	290
BanII	GRGCYC	2 cut(s)	707, 767
Bbv12I	GWGCWC	1 cut(s)	399
BbvCI	CCTCAGC	1 cut(s)	530
BbvI	GCAGC	2 cut(s)	764, 840
BccI	CCATC	4 cut(s)	613, 782, 805, 848
BceAI	ACGGC	2 cut(s)	217, 571
BcgI	CGANNNNNNTGC	2 cut(s)	144, 178
BciT130I	CCWGG	1 cut(s)	475
BclI	TGATCA	1 cut(s)	487
BcoDI	GTCTC	1 cut(s)	23
BfaI	CTAG	3 cut(s)	302, 633, 708
BisI	GCNGC	5 cut(s)	343, 346, 349, 753, 829
BlnI	CCTAGG	2 cut(s)	632, 707
BlpI	GCTNAGC	1 cut(s)	269
BlsI	GCNGC	5 cut(s)	344, 347, 350, 754, 830
BmcAI	AGTACT	1 cut(s)	428
Bme1390I	CCNGG	1 cut(s)	475
Bme18I	GGWCC	4 cut(s)	622, 653, 722, 779
BmeT110I	CYCGRG	1 cut(s)	832
BmgT120I	GGNCC	5 cut(s)	584, 622, 653, 722, 779
BmiI	GGNNCC	5 cut(s)	585, 624, 655, 704, 764
BmrFI	CCNGG	1 cut(s)	475
BmsI	GCATC	2 cut(s)	213, 782
Bpu10I	CCTNAGC	1 cut(s)	530
Bpu1102I	GCTNAGC	1 cut(s)	269
BpuEI	CTTGAG	1 cut(s)	296
BsaI	GGTCTC	1 cut(s)	23
BsaJI	CCNNGG	7 cut(s)	141, 368, 473, 632, 707, 768, 833
BsaWI	WCCGGW	1 cut(s)	776
BsaXI	ACNNNNNCTCC	4 cut(s)	270, 300, 508, 538
Bsc4I	CCNNNNNNNGG	4 cut(s)	147, 297, 788, 854
Bse1I	ACTGG	1 cut(s)	152
Bse3DI	GCAATG	1 cut(s)	570
BseAI	TCCGGA	1 cut(s)	776
BseBI	CCWGG	1 cut(s)	475
BseDI	CCNNGG	7 cut(s)	141, 368, 473, 632, 707, 768, 833
BseGI	GGATG	2 cut(s)	467, 773
BseLI	CCNNNNNNNGG	4 cut(s)	147, 297, 788, 854
BseMI	GCAATG	1 cut(s)	570
BseMII	CTCAG	2 cut(s)	260, 521
BseNI	ACTGG	1 cut(s)	152
BseRI	GAGGAG	1 cut(s)	566
BseXI	GCAGC	2 cut(s)	764, 840
BseYI	CCCAGC	1 cut(s)	390
BshFI	GGCC	2 cut(s)	290, 586
BsiHKAI	GWGCWC	1 cut(s)	399
BsiHKCI	CYCGRG	1 cut(s)	832
BsiSI	CCGG	1 cut(s)	777
BsiWI	CGTACG	1 cut(s)	783
BslFI	GGGAC	1 cut(s)	608
BslI	CCNNNNNNNGG	4 cut(s)	147, 297, 788, 854
BsmAI	GTCTC	1 cut(s)	23
BsmFI	GGGAC	1 cut(s)	608
BsnI	GGCC	2 cut(s)	290, 586
Bso31I	GGTCTC	1 cut(s)	23
BsoBI	CYCGRG	1 cut(s)	832
Bsp1286I	GDGCHC	3 cut(s)	399, 707, 767
Bsp13I	TCCGGA	1 cut(s)	776
Bsp1407I	TGTACA	1 cut(s)	687
Bsp143I	GATC	3 cut(s)	487, 794, 802
Bsp1720I	GCTNAGC	1 cut(s)	269
Bsp19I	CCATGG	1 cut(s)	141
BspACI	CCGC	5 cut(s)	342, 345, 348, 351, 358
BspANI	GGCC	2 cut(s)	290, 586
BspCNI	CTCAG	2 cut(s)	261, 522
BspEI	TCCGGA	1 cut(s)	776
BspHI	TCATGA	2 cut(s)	547, 604
BspLI	GGNNCC	5 cut(s)	585, 624, 655, 704, 764
BspTNI	GGTCTC	1 cut(s)	23
BsrDI	GCAATG	1 cut(s)	570
BsrGI	TGTACA	1 cut(s)	687
BsrI	ACTGG	1 cut(s)	152
BssECI	CCNNGG	7 cut(s)	141, 368, 473, 632, 707, 768, 833
BssMI	GATC	3 cut(s)	487, 794, 802
BssT1I	CCWWGG	5 cut(s)	141, 368, 632, 707, 768
Bst2UI	CCWGG	1 cut(s)	475
Bst4CI	ACNGT	1 cut(s)	783
Bst6I	CTCTTC	1 cut(s)	107
BstAUI	TGTACA	1 cut(s)	687
BstC8I	GCNNGC	1 cut(s)	318
BstDEI	CTNAG	3 cut(s)	269, 530, 658
BstDSI	CCRYGG	1 cut(s)	141
BstEII	GGTNACC	2 cut(s)	353, 730
BstF5I	GGATG	2 cut(s)	467, 773
BstKTI	GATC	3 cut(s)	490, 797, 805
BstMAI	GTCTC	1 cut(s)	23
BstMBI	GATC	3 cut(s)	487, 794, 802
BstMWI	GCNNNNNNNGC	3 cut(s)	348, 357, 535
BstNI	CCWGG	1 cut(s)	475
BstNSI	RCATGY	2 cut(s)	463, 482
BstPI	GGTNACC	2 cut(s)	353, 730
BstSCI	CCNGG	1 cut(s)	473
BstV1I	GCAGC	2 cut(s)	764, 840
BsuRI	GGCC	2 cut(s)	290, 586
BtgI	CCRYGG	1 cut(s)	141
BtsCI	GGATG	2 cut(s)	467, 773
Cac8I	GCNNGC	1 cut(s)	318
CciI	TCATGA	2 cut(s)	547, 604
Cfr13I	GGNCC	5 cut(s)	584, 622, 653, 722, 779
CpoI	CGGWCCG	1 cut(s)	779
Csp6I	GTAC	4 cut(s)	199, 427, 688, 784
CspI	CGGWCCG	1 cut(s)	779
CviAII	CATG	9 cut(s)	142, 156, 257, 274, 460, 479, 548, 605, 685
CviQI	GTAC	4 cut(s)	199, 427, 688, 784
DdeI	CTNAG	3 cut(s)	269, 530, 658
DpnI	GATC	3 cut(s)	489, 796, 804
DpnII	GATC	3 cut(s)	487, 794, 802
DrdI	GACNNNNNNGTC	1 cut(s)	668
DseDI	GACNNNNNNGTC	1 cut(s)	668
EaeI	YGGCCR	1 cut(s)	288
Eam1104I	CTCTTC	1 cut(s)	107
EarI	CTCTTC	1 cut(s)	107
Eco130I	CCWWGG	5 cut(s)	141, 368, 632, 707, 768
Eco24I	GRGCYC	2 cut(s)	707, 767
Eco31I	GGTCTC	1 cut(s)	23
Eco32I	GATATC	1 cut(s)	41
Eco47I	GGWCC	4 cut(s)	622, 653, 722, 779
Eco57I	CTGAAG	1 cut(s)	702
Eco88I	CYCGRG	1 cut(s)	832
Eco91I	GGTNACC	2 cut(s)	353, 730
EcoO109I	RGGNCCY	2 cut(s)	653, 722
EcoO65I	GGTNACC	2 cut(s)	353, 730
EcoRII	CCWGG	1 cut(s)	473
EcoRV	GATATC	1 cut(s)	41
EcoT14I	CCWWGG	5 cut(s)	141, 368, 632, 707, 768
EcoT38I	GRGCYC	2 cut(s)	707, 767
ErhI	CCWWGG	5 cut(s)	141, 368, 632, 707, 768
FaeI	CATG	9 cut(s)	145, 159, 260, 277, 463, 482, 551, 608, 688
FalI	AAGNNNNNCTT	2 cut(s)	427, 459
FaqI	GGGAC	1 cut(s)	608
FatI	CATG	9 cut(s)	141, 155, 256, 273, 459, 478, 547, 604, 684
FauNDI	CATATG	2 cut(s)	799, 871
FbaI	TGATCA	1 cut(s)	487
Fnu4HI	GCNGC	5 cut(s)	343, 346, 349, 753, 829
FokI	GGATG	2 cut(s)	454, 760
FriOI	GRGCYC	2 cut(s)	707, 767
Fsp4HI	GCNGC	5 cut(s)	343, 346, 349, 753, 829
FspBI	CTAG	3 cut(s)	302, 633, 708
GluI	GCNGC	5 cut(s)	343, 346, 349, 753, 829
GsaI	CCCAGC	1 cut(s)	394
HaeIII	GGCC	2 cut(s)	290, 586
HapII	CCGG	1 cut(s)	777
Hin1II	CATG	9 cut(s)	145, 159, 260, 277, 463, 482, 551, 608, 688
HindIII	AAGCTT	1 cut(s)	314
HinfI	GANTC	2 cut(s)	601, 662
HpaII	CCGG	1 cut(s)	777
HphI	GGTGA	3 cut(s)	347, 742, 826
Hpy166II	GTNNAC	2 cut(s)	690, 889
Hpy188I	TCNGA	3 cut(s)	567, 678, 844
Hpy188III	TCNNGA	6 cut(s)	506, 548, 605, 651, 777, 932
Hpy8I	GTNNAC	2 cut(s)	690, 889
HpyAV	CCTTC	2 cut(s)	319, 871
HpyCH4III	ACNGT	1 cut(s)	783
HpyCH4IV	ACGT	2 cut(s)	240, 891
HpyCH4V	TGCA	3 cut(s)	32, 575, 752
HpyF10VI	GCNNNNNNNGC	3 cut(s)	348, 357, 535
HpyF3I	CTNAG	3 cut(s)	269, 530, 658
HpySE526I	ACGT	2 cut(s)	240, 891
Hsp92II	CATG	9 cut(s)	145, 159, 260, 277, 463, 482, 551, 608, 688
Kpn2I	TCCGGA	1 cut(s)	776
Ksp22I	TGATCA	1 cut(s)	487
Kzo9I	GATC	3 cut(s)	487, 794, 802
LmnI	GCTCC	3 cut(s)	567, 702, 762
Lsp1109I	GCAGC	2 cut(s)	764, 840
LweI	GCATC	2 cut(s)	213, 782
MaeI	CTAG	3 cut(s)	302, 633, 708
MaeII	ACGT	2 cut(s)	240, 891
MaeIII	GTNAC	5 cut(s)	131, 353, 730, 814, 862
MalI	GATC	3 cut(s)	489, 796, 804
MboI	GATC	3 cut(s)	487, 794, 802
MboII	GAAGA	6 cut(s)	75, 78, 94, 202, 241, 832
MhlI	GDGCHC	3 cut(s)	399, 707, 767
MlsI	TGGCCA	1 cut(s)	290
MluCI	AATT	3 cut(s)	7, 62, 375
MluNI	TGGCCA	1 cut(s)	290
MlyI	GAGTC	2 cut(s)	595, 656
MmeI	TCCRAC	1 cut(s)	570
Mox20I	TGGCCA	1 cut(s)	290
MroI	TCCGGA	1 cut(s)	776
MroXI	GAANNNNTTC	1 cut(s)	416
MscI	TGGCCA	1 cut(s)	290
MseI	TTAA	2 cut(s)	60, 114
Msp20I	TGGCCA	1 cut(s)	290
MspI	CCGG	1 cut(s)	777
MspR9I	CCNGG	1 cut(s)	475
MvaI	CCWGG	1 cut(s)	475
MwoI	GCNNNNNNNGC	3 cut(s)	348, 357, 535
NcoI	CCATGG	1 cut(s)	141
NdeI	CATATG	2 cut(s)	799, 871
NdeII	GATC	3 cut(s)	487, 794, 802
NlaIII	CATG	9 cut(s)	145, 159, 260, 277, 463, 482, 551, 608, 688
NlaIV	GGNNCC	5 cut(s)	585, 624, 655, 704, 764
NmeAIII	GCCGAG	1 cut(s)	366
NmuCI	GTSAC	5 cut(s)	131, 353, 730, 814, 862
NspI	RCATGY	2 cut(s)	463, 482
PagI	TCATGA	2 cut(s)	547, 604
PciI	ACATGT	1 cut(s)	459
PdmI	GAANNNNTTC	1 cut(s)	416
Pfl23II	CGTACG	1 cut(s)	783
PflMI	CCANNNNNTGG	2 cut(s)	147, 854
PkrI	GCNGC	5 cut(s)	344, 347, 350, 754, 830
PleI	GAGTC	2 cut(s)	595, 656
PpsI	GAGTC	2 cut(s)	595, 656
PpuMI	RGGWCCY	2 cut(s)	653, 722
PscI	ACATGT	1 cut(s)	459
Psp5II	RGGWCCY	2 cut(s)	653, 722
Psp6I	CCWGG	1 cut(s)	473
PspEI	GGTNACC	2 cut(s)	353, 730
PspFI	CCCAGC	1 cut(s)	390
PspGI	CCWGG	1 cut(s)	473
PspLI	CGTACG	1 cut(s)	783
PspN4I	GGNNCC	5 cut(s)	585, 624, 655, 704, 764
PspPI	GGNCC	5 cut(s)	584, 622, 653, 722, 779
PspPPI	RGGWCCY	2 cut(s)	653, 722
RsaI	GTAC	4 cut(s)	200, 428, 689, 785
RsaNI	GTAC	4 cut(s)	199, 427, 688, 784
Rsr2I	CGGWCCG	1 cut(s)	779
RsrII	CGGWCCG	1 cut(s)	779
SaqAI	TTAA	2 cut(s)	60, 114
SatI	GCNGC	5 cut(s)	343, 346, 349, 753, 829
Sau3AI	GATC	3 cut(s)	487, 794, 802
Sau96I	GGNCC	5 cut(s)	584, 622, 653, 722, 779
ScaI	AGTACT	1 cut(s)	428
SchI	GAGTC	2 cut(s)	595, 656
ScrFI	CCNGG	1 cut(s)	475
SduI	GDGCHC	3 cut(s)	399, 707, 767
SfaNI	GCATC	2 cut(s)	213, 782
SinI	GGWCC	4 cut(s)	622, 653, 722, 779
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
Sse9I	AATT	3 cut(s)	7, 62, 375
SsiI	CCGC	5 cut(s)	342, 345, 348, 351, 358
SspMI	CTAG	3 cut(s)	302, 633, 708
StyD4I	CCNGG	1 cut(s)	473
StyI	CCWWGG	5 cut(s)	141, 368, 632, 707, 768
TaaI	ACNGT	1 cut(s)	783
TaiI	ACGT	2 cut(s)	243, 894
TaqI	TCGA	1 cut(s)	164
TaqII	GACCGA	1 cut(s)	749
TasI	AATT	3 cut(s)	7, 62, 375
TatI	WGTACW	2 cut(s)	426, 687
TauI	GCSGC	3 cut(s)	345, 348, 351
Tru1I	TTAA	2 cut(s)	60, 114
Tru9I	TTAA	2 cut(s)	60, 114
TseFI	GTSAC	5 cut(s)	131, 353, 730, 814, 862
TseI	GCWGC	2 cut(s)	752, 828
Tsp45I	GTSAC	5 cut(s)	131, 353, 730, 814, 862
Van91I	CCANNNNNTGG	2 cut(s)	147, 854
VpaK11BI	GGWCC	4 cut(s)	622, 653, 722, 779
XapI	RAATTY	2 cut(s)	7, 62
XceI	RCATGY	2 cut(s)	463, 482
XmaJI	CCTAGG	2 cut(s)	632, 707
XmnI	GAANNNNTTC	1 cut(s)	416
XspI	CTAG	3 cut(s)	302, 633, 708
ZrmI	AGTACT	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.