Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0008824

Physical Location & Seq

Genomic Coordinates Reverse (-)

38016554 .. 38017497

Gene Structure 944 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG330800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGAGCTTCAATTAGTTCTAACAATTCTTACAGAAACTGAAAATGGGCGAGAGATTGATCAACTCTTCGTCACAAAGAGAATGAGTGGAGGTTATAATGTGACTGAGAGAGAAAGGAAGAGAGAATGGTACGGAATTGAATTGATTTCCAGTGAAGAGGTGTACGCATTTCAAATGGAGGACATTGCTTTCTTCGAGTTCCCGCTGAGCATGGGAGTCTCTGTGGCCAAGCACAGGCTAGAGATACTCAAGCTTGCCAAGAAGGAAAATGAGGGTGGTGGTGGTCACCGCCACCACCCAAGGTCAATTTCCAGGCTCGGCTGGGCGCTCATCAAAACCAAGAAGTGTTTCAGCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAM_2

Protein Analysis

119

Amino Acids

13.8

Weight (kDa)

8.73

Isoelectric Point (pI)

49.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008824)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01970
malus_domestica	MD02G1018000.v1.1 MD15G1161900.v1.1
prunus_persica	Prupe.7G257100_v2.0.a1
pyrus_communis	pycom02g01600 pycom15g14550
rosa_chinensis	RchiOBHm_Chr2g0087001
rosa_laevigata	RLG00000002278 RLG00000015821
rosa_multiflora	Rmu_sc0010698.1_g000001 Rmu_sc0029090.1_g000001 Rmu_sc0030653.1_g000001
rosa_roxburghii	Rroxscaffold_2G00153970
rosa_rugosa	Rorug01G0471400 Rorug07G0186800
rosa_samantha	Rh2AG024200 Rh2BG024700 Rh2CG024800 Rh2DG024700 Rh7AG330800 Rh7BG320500
rosa_wichuraiana	Rw2G001900 Rw2G001950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	96
AciI	CCGC	2 cut(s)	203, 289
AcoI	YGGCCR	1 cut(s)	225
AfaI	GTAC	2 cut(s)	131, 164
AfiI	CCNNNNNNNGG	1 cut(s)	234
AgsI	TTSAA	3 cut(s)	11, 140, 173
AjnI	CCWGG	1 cut(s)	311
AjuI	GAANNNNNNNTTGG	3 cut(s)	292, 324, 332
AluBI	AGCT	2 cut(s)	7, 253
AluI	AGCT	2 cut(s)	7, 253
Alw26I	GTCTC	1 cut(s)	223
AlwNI	CAGNNNCTG	1 cut(s)	38
AoxI	GGCC	1 cut(s)	225
Asp700I	GAANNNNTTC	1 cut(s)	347
AspLEI	GCGC	1 cut(s)	328
AsuHPI	GGTGA	1 cut(s)	278
BalI	TGGCCA	1 cut(s)	227
BciT130I	CCWGG	1 cut(s)	313
BclI	TGATCA	1 cut(s)	58
BcoDI	GTCTC	1 cut(s)	223
BfaI	CTAG	1 cut(s)	239
BfoI	RGCGCY	1 cut(s)	329
BlpI	GCTNAGC	1 cut(s)	206
Bme1390I	CCNGG	1 cut(s)	313
BmrFI	CCNGG	1 cut(s)	313
Bpu1102I	GCTNAGC	1 cut(s)	206
BpuEI	CTTGAG	1 cut(s)	233
BsaJI	CCNNGG	1 cut(s)	299
BsaXI	ACNNNNNCTCC	2 cut(s)	207, 237
Bsc4I	CCNNNNNNNGG	1 cut(s)	234
Bse1I	ACTGG	1 cut(s)	150
Bse3DI	GCAATG	1 cut(s)	183
BseBI	CCWGG	1 cut(s)	313
BseDI	CCNNGG	1 cut(s)	299
BseLI	CCNNNNNNNGG	1 cut(s)	234
BseMI	GCAATG	1 cut(s)	183
BseMII	CTCAG	2 cut(s)	96, 197
BseNI	ACTGG	1 cut(s)	150
BseYI	CCCAGC	1 cut(s)	321
BshFI	GGCC	1 cut(s)	227
BslI	CCNNNNNNNGG	1 cut(s)	234
BsmAI	GTCTC	1 cut(s)	223
BsnI	GGCC	1 cut(s)	227
Bsp143I	GATC	1 cut(s)	58
Bsp1720I	GCTNAGC	1 cut(s)	206
BspACI	CCGC	2 cut(s)	203, 289
BspANI	GGCC	1 cut(s)	227
BspCNI	CTCAG	2 cut(s)	97, 198
BsrDI	GCAATG	1 cut(s)	183
BsrI	ACTGG	1 cut(s)	150
BssECI	CCNNGG	1 cut(s)	299
BssMI	GATC	1 cut(s)	58
BssT1I	CCWWGG	1 cut(s)	299
Bst2UI	CCWGG	1 cut(s)	313
Bst6I	CTCTTC	3 cut(s)	71, 113, 150
BstC8I	GCNNGC	1 cut(s)	255
BstDEI	CTNAG	2 cut(s)	105, 206
BstEII	GGTNACC	1 cut(s)	284
BstH2I	RGCGCY	1 cut(s)	329
BstHHI	GCGC	1 cut(s)	328
BstKTI	GATC	1 cut(s)	61
BstMAI	GTCTC	1 cut(s)	223
BstMBI	GATC	1 cut(s)	58
BstNI	CCWGG	1 cut(s)	313
BstPI	GGTNACC	1 cut(s)	284
BstSCI	CCNGG	1 cut(s)	311
BsuRI	GGCC	1 cut(s)	227
BtsIMutI	CAGTG	1 cut(s)	157
Cac8I	GCNNGC	1 cut(s)	255
CaiI	CAGNNNCTG	1 cut(s)	38
CfoI	GCGC	1 cut(s)	328
Csp6I	GTAC	2 cut(s)	130, 163
CviAII	CATG	1 cut(s)	211
CviJI	RGCY	6 cut(s)	7, 227, 238, 253, 316, 321
CviKI_1	RGCY	6 cut(s)	7, 227, 238, 253, 316, 321
CviQI	GTAC	2 cut(s)	130, 163
DdeI	CTNAG	2 cut(s)	105, 206
DpnI	GATC	1 cut(s)	60
DpnII	GATC	1 cut(s)	58
EaeI	YGGCCR	1 cut(s)	225
Eam1104I	CTCTTC	3 cut(s)	71, 113, 150
EarI	CTCTTC	3 cut(s)	71, 113, 150
Eco130I	CCWWGG	1 cut(s)	299
Eco91I	GGTNACC	1 cut(s)	284
EcoO65I	GGTNACC	1 cut(s)	284
EcoRII	CCWGG	1 cut(s)	311
EcoT14I	CCWWGG	1 cut(s)	299
ErhI	CCWWGG	1 cut(s)	299
FaeI	CATG	1 cut(s)	214
FaiI	YATR	2 cut(s)	96, 212
FatI	CATG	1 cut(s)	210
FauI	CCCGC	1 cut(s)	210
FbaI	TGATCA	1 cut(s)	58
FspBI	CTAG	1 cut(s)	239
GlaI	GCGC	1 cut(s)	327
GsaI	CCCAGC	1 cut(s)	325
HaeII	RGCGCY	1 cut(s)	329
HaeIII	GGCC	1 cut(s)	227
HhaI	GCGC	1 cut(s)	328
Hin1II	CATG	1 cut(s)	214
Hin6I	GCGC	1 cut(s)	326
HinP1I	GCGC	1 cut(s)	326
HindIII	AAGCTT	1 cut(s)	251
HinfI	GANTC	1 cut(s)	216
HphI	GGTGA	1 cut(s)	278
Hpy166II	GTNNAC	1 cut(s)	163
Hpy8I	GTNNAC	1 cut(s)	163
HpyAV	CCTTC	1 cut(s)	256
HpyF3I	CTNAG	2 cut(s)	105, 206
Hsp92II	CATG	1 cut(s)	214
HspAI	GCGC	1 cut(s)	326
Ksp22I	TGATCA	1 cut(s)	58
Kzo9I	GATC	1 cut(s)	58
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	5 cut(s)	163, 220, 298, 307, 325
MaeI	CTAG	1 cut(s)	239
MaeIII	GTNAC	3 cut(s)	70, 100, 284
MalI	GATC	1 cut(s)	60
MboI	GATC	1 cut(s)	58
MboII	GAAGA	4 cut(s)	58, 130, 167, 184
MlsI	TGGCCA	1 cut(s)	227
MluCI	AATT	5 cut(s)	11, 24, 135, 140, 306
MluNI	TGGCCA	1 cut(s)	227
MlyI	GAGTC	1 cut(s)	225
MnlI	CCTC	4 cut(s)	83, 151, 172, 265
Mox20I	TGGCCA	1 cut(s)	227
MroXI	GAANNNNTTC	1 cut(s)	347
MscI	TGGCCA	1 cut(s)	227
Msp20I	TGGCCA	1 cut(s)	227
MspA1I	CMGCKG	1 cut(s)	205
MspR9I	CCNGG	1 cut(s)	313
MvaI	CCWGG	1 cut(s)	313
NdeII	GATC	1 cut(s)	58
NlaIII	CATG	1 cut(s)	214
NmeAIII	GCCGAG	1 cut(s)	297
NmuCI	GTSAC	3 cut(s)	70, 100, 284
PdmI	GAANNNNTTC	1 cut(s)	347
PleI	GAGTC	1 cut(s)	224
PpsI	GAGTC	1 cut(s)	224
PsiI	TTATAA	1 cut(s)	96
Psp6I	CCWGG	1 cut(s)	311
PspEI	GGTNACC	1 cut(s)	284
PspFI	CCCAGC	1 cut(s)	321
PspGI	CCWGG	1 cut(s)	311
PstNI	CAGNNNCTG	1 cut(s)	38
RsaI	GTAC	2 cut(s)	131, 164
RsaNI	GTAC	2 cut(s)	130, 163
Sau3AI	GATC	1 cut(s)	58
SchI	GAGTC	1 cut(s)	225
ScrFI	CCNGG	1 cut(s)	313
SetI	ASST	5 cut(s)	9, 94, 162, 255, 305
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
Sse9I	AATT	5 cut(s)	11, 24, 135, 140, 306
SsiI	CCGC	2 cut(s)	203, 289
SspMI	CTAG	1 cut(s)	239
StyD4I	CCNGG	1 cut(s)	311
StyI	CCWWGG	1 cut(s)	299
TaqI	TCGA	1 cut(s)	195
TasI	AATT	5 cut(s)	11, 24, 135, 140, 306
TscAI	CASTG	1 cut(s)	157
TseFI	GTSAC	3 cut(s)	70, 100, 284
Tsp45I	GTSAC	3 cut(s)	70, 100, 284
TspGWI	ACGGA	1 cut(s)	147
TspRI	CASTG	1 cut(s)	157
XmnI	GAANNNNTTC	1 cut(s)	347
XspI	CTAG	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.