Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0008824

Physical Location & Seq

Genomic Coordinates Forward (+)

31214001 .. 31214715

Gene Structure 715 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002278

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGAGGACATTGTTTTCTTCAACCATGAGTTCCTGCTGAGCATAGGAGTCTCTGTGGCCAAGCACAGGCTAGAGATACTTAAGCTTGCCAAGAAGGAAAACGAGGGTGGTGGTGGTGGTCACCGCCACCACCCAAGGTCAGTTTCAAGGCTTGGCTGGGTGCTCATCAAAACCAAGAAGTGTTTCAGCAAGTACTTTACAAGATTGGCTTTCCAAGAGAACGAGATGTCATCGTCCCCCAGGCATGTGGCTGATCAACCAGAGAAGTATCAAGAGCATTGGAGAGGAAGTTTGGTGAGGAAGCCAAAGGAGCTTGAAGCTATCAGGACCCTTAACTCGAAGGTCAATGAGAGGCTTATGTACACAACAAATAGGAGCCCTAGGCTCACTTCAGGTCCTATGGTGACTAACAAGTTAATGGTTGCAGCAAATAGAAGCCCCAAGGCATCTGGAATGTGCGATGGATGGTCATATGATTGGCTGATGGTGACGAAGAATATGAGCCCGAAGCTGTCCGGACCGCTTGATGGAAGAGTCACTCCATATGAGAAGGAACGGGTGGACGTTCATTTTGATGACCATTCACTTTGGACTGTTATGATTCAGGATACGAAACCCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAM_2

Protein Analysis

208

Amino Acids

23.82

Weight (kDa)

9.67

Isoelectric Point (pI)

38.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008824)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01970
malus_domestica	MD02G1018000.v1.1 MD15G1161900.v1.1
prunus_persica	Prupe.7G257100_v2.0.a1
pyrus_communis	pycom02g01600 pycom15g14550
rosa_chinensis	RchiOBHm_Chr2g0087001
rosa_laevigata	RLG00000002278 RLG00000015821
rosa_multiflora	Rmu_sc0010698.1_g000001 Rmu_sc0029090.1_g000001 Rmu_sc0030653.1_g000001
rosa_roxburghii	Rroxscaffold_2G00153970
rosa_rugosa	Rorug01G0471400 Rorug07G0186800
rosa_samantha	Rh2AG024200 Rh2BG024700 Rh2CG024800 Rh2DG024700 Rh7AG330800 Rh7BG320500
rosa_wichuraiana	Rw2G001900 Rw2G001950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	515
AciI	CCGC	2 cut(s)	124, 521
AcoI	YGGCCR	1 cut(s)	57
AcuI	CTGAAG	1 cut(s)	375
AfaI	GTAC	2 cut(s)	194, 362
AfiI	CCNNNNNNNGG	2 cut(s)	66, 527
AflII	CTTAAG	1 cut(s)	80
AgsI	TTSAA	3 cut(s)	22, 147, 317
AjnI	CCWGG	1 cut(s)	239
AjuI	GAANNNNNNNTTGG	4 cut(s)	127, 159, 167, 199
AluBI	AGCT	4 cut(s)	85, 313, 320, 511
AluI	AGCT	4 cut(s)	85, 313, 320, 511
Alw21I	GWGCWC	1 cut(s)	165
Alw26I	GTCTC	1 cut(s)	55
Aor13HI	TCCGGA	1 cut(s)	515
AoxI	GGCC	1 cut(s)	57
ApeKI	GCWGC	1 cut(s)	425
ArsI	GACNNNNNNTTYG	2 cut(s)	554, 586
Asp700I	GAANNNNTTC	1 cut(s)	182
AspA2I	CCTAGG	1 cut(s)	380
AspS9I	GGNCC	3 cut(s)	327, 395, 518
AsuHPI	GGTGA	4 cut(s)	113, 307, 415, 499
AvaII	GGWCC	3 cut(s)	327, 395, 518
AvrII	CCTAGG	1 cut(s)	380
BalI	TGGCCA	1 cut(s)	59
BanII	GRGCYC	2 cut(s)	380, 506
Bbv12I	GWGCWC	1 cut(s)	165
BbvI	GCAGC	1 cut(s)	437
BccI	CCATC	4 cut(s)	455, 459, 478, 521
BciT130I	CCWGG	1 cut(s)	241
BciVI	GTATCC	1 cut(s)	601
BclI	TGATCA	1 cut(s)	253
BcoDI	GTCTC	1 cut(s)	55
BfaI	CTAG	2 cut(s)	71, 381
BfrI	CTTAAG	1 cut(s)	80
BfuI	GTATCC	1 cut(s)	601
BisI	GCNGC	1 cut(s)	426
BlnI	CCTAGG	1 cut(s)	380
BlpI	GCTNAGC	1 cut(s)	38
BlsI	GCNGC	1 cut(s)	427
BmcAI	AGTACT	1 cut(s)	194
Bme1390I	CCNGG	1 cut(s)	241
Bme18I	GGWCC	3 cut(s)	327, 395, 518
BmgT120I	GGNCC	3 cut(s)	327, 395, 518
BmiI	GGNNCC	2 cut(s)	329, 377
BmrFI	CCNGG	1 cut(s)	241
BmsI	GCATC	1 cut(s)	455
Bpu1102I	GCTNAGC	1 cut(s)	38
BsaJI	CCNNGG	4 cut(s)	134, 239, 380, 441
BsaWI	WCCGGW	1 cut(s)	515
BsaXI	ACNNNNNCTCC	4 cut(s)	39, 69, 274, 304
Bsc4I	CCNNNNNNNGG	2 cut(s)	66, 527
BseAI	TCCGGA	1 cut(s)	515
BseBI	CCWGG	1 cut(s)	241
BseDI	CCNNGG	4 cut(s)	134, 239, 380, 441
BseGI	GGATG	1 cut(s)	470
BseLI	CCNNNNNNNGG	2 cut(s)	66, 527
BseMII	CTCAG	1 cut(s)	29
BseXI	GCAGC	1 cut(s)	437
BseYI	CCCAGC	1 cut(s)	156
BshFI	GGCC	1 cut(s)	59
BsiHKAI	GWGCWC	1 cut(s)	165
BsiSI	CCGG	1 cut(s)	516
BslFI	GGGAC	1 cut(s)	220
BslI	CCNNNNNNNGG	2 cut(s)	66, 527
BsmAI	GTCTC	1 cut(s)	55
BsmFI	GGGAC	1 cut(s)	220
BsnI	GGCC	1 cut(s)	59
Bsp1286I	GDGCHC	3 cut(s)	165, 380, 506
Bsp13I	TCCGGA	1 cut(s)	515
Bsp1407I	TGTACA	1 cut(s)	360
Bsp143I	GATC	1 cut(s)	253
Bsp1720I	GCTNAGC	1 cut(s)	38
BspACI	CCGC	2 cut(s)	124, 521
BspANI	GGCC	1 cut(s)	59
BspCNI	CTCAG	1 cut(s)	30
BspEI	TCCGGA	1 cut(s)	515
BspLI	GGNNCC	2 cut(s)	329, 377
BspTI	CTTAAG	1 cut(s)	80
BsrGI	TGTACA	1 cut(s)	360
BssECI	CCNNGG	4 cut(s)	134, 239, 380, 441
BssMI	GATC	1 cut(s)	253
BssT1I	CCWWGG	3 cut(s)	134, 380, 441
Bst2UI	CCWGG	1 cut(s)	241
Bst4CI	ACNGT	1 cut(s)	595
Bst6I	CTCTTC	1 cut(s)	526
BstAFI	CTTAAG	1 cut(s)	80
BstAUI	TGTACA	1 cut(s)	360
BstC8I	GCNNGC	1 cut(s)	87
BstDEI	CTNAG	1 cut(s)	38
BstEII	GGTNACC	1 cut(s)	119
BstF5I	GGATG	1 cut(s)	470
BstKTI	GATC	1 cut(s)	256
BstMAI	GTCTC	1 cut(s)	55
BstMBI	GATC	1 cut(s)	253
BstMWI	GCNNNNNNNGC	1 cut(s)	310
BstNI	CCWGG	1 cut(s)	241
BstNSI	RCATGY	1 cut(s)	248
BstPI	GGTNACC	1 cut(s)	119
BstSCI	CCNGG	1 cut(s)	239
BstV1I	GCAGC	1 cut(s)	437
BstXI	CCANNNNNNTGG	1 cut(s)	247
BsuI	GTATCC	1 cut(s)	601
BsuRI	GGCC	1 cut(s)	59
BtgZI	GCGATG	1 cut(s)	474
BtsCI	GGATG	1 cut(s)	470
Cac8I	GCNNGC	1 cut(s)	87
Cfr13I	GGNCC	3 cut(s)	327, 395, 518
CpoI	CGGWCCG	1 cut(s)	518
Csp6I	GTAC	2 cut(s)	193, 361
CspI	CGGWCCG	1 cut(s)	518
CviAII	CATG	2 cut(s)	26, 245
CviQI	GTAC	2 cut(s)	193, 361
DdeI	CTNAG	1 cut(s)	38
DpnI	GATC	1 cut(s)	255
DpnII	GATC	1 cut(s)	253
EaeI	YGGCCR	1 cut(s)	57
Eam1104I	CTCTTC	1 cut(s)	526
EarI	CTCTTC	1 cut(s)	526
Eco130I	CCWWGG	3 cut(s)	134, 380, 441
Eco24I	GRGCYC	2 cut(s)	380, 506
Eco47I	GGWCC	3 cut(s)	327, 395, 518
Eco57I	CTGAAG	1 cut(s)	375
Eco91I	GGTNACC	1 cut(s)	119
EcoO109I	RGGNCCY	2 cut(s)	327, 395
EcoO65I	GGTNACC	1 cut(s)	119
EcoRII	CCWGG	1 cut(s)	239
EcoT14I	CCWWGG	3 cut(s)	134, 380, 441
EcoT38I	GRGCYC	2 cut(s)	380, 506
ErhI	CCWWGG	3 cut(s)	134, 380, 441
FaeI	CATG	2 cut(s)	29, 248
FalI	AAGNNNNNCTT	2 cut(s)	193, 225
FaqI	GGGAC	1 cut(s)	220
FatI	CATG	2 cut(s)	25, 244
FauNDI	CATATG	2 cut(s)	472, 544
FbaI	TGATCA	1 cut(s)	253
Fnu4HI	GCNGC	1 cut(s)	426
FokI	GGATG	1 cut(s)	477
FriOI	GRGCYC	2 cut(s)	380, 506
Fsp4HI	GCNGC	1 cut(s)	426
FspBI	CTAG	2 cut(s)	71, 381
GluI	GCNGC	1 cut(s)	426
GsaI	CCCAGC	1 cut(s)	160
HaeIII	GGCC	1 cut(s)	59
HapII	CCGG	1 cut(s)	516
Hin1II	CATG	2 cut(s)	29, 248
HindIII	AAGCTT	1 cut(s)	83
HinfI	GANTC	3 cut(s)	48, 534, 601
HpaII	CCGG	1 cut(s)	516
HphI	GGTGA	4 cut(s)	113, 307, 415, 499
Hpy166II	GTNNAC	2 cut(s)	363, 562
Hpy188III	TCNNGA	5 cut(s)	272, 325, 450, 516, 605
Hpy8I	GTNNAC	2 cut(s)	363, 562
HpyAV	CCTTC	3 cut(s)	88, 334, 544
HpyCH4III	ACNGT	1 cut(s)	595
HpyCH4IV	ACGT	1 cut(s)	564
HpyCH4V	TGCA	1 cut(s)	425
HpyF10VI	GCNNNNNNNGC	1 cut(s)	310
HpyF3I	CTNAG	1 cut(s)	38
HpySE526I	ACGT	1 cut(s)	564
Hsp92II	CATG	2 cut(s)	29, 248
Kpn2I	TCCGGA	1 cut(s)	515
Ksp22I	TGATCA	1 cut(s)	253
Kzo9I	GATC	1 cut(s)	253
LmnI	GCTCC	2 cut(s)	310, 375
Lsp1109I	GCAGC	1 cut(s)	437
LweI	GCATC	1 cut(s)	455
MaeI	CTAG	2 cut(s)	71, 381
MaeII	ACGT	1 cut(s)	564
MaeIII	GTNAC	4 cut(s)	119, 403, 487, 535
MalI	GATC	1 cut(s)	255
MboI	GATC	1 cut(s)	253
MboII	GAAGA	3 cut(s)	10, 505, 543
MhlI	GDGCHC	3 cut(s)	165, 380, 506
MlsI	TGGCCA	1 cut(s)	59
MluNI	TGGCCA	1 cut(s)	59
MlyI	GAGTC	2 cut(s)	57, 543
MnlI	CCTC	4 cut(s)	97, 278, 291, 345
Mox20I	TGGCCA	1 cut(s)	59
MroI	TCCGGA	1 cut(s)	515
MroXI	GAANNNNTTC	1 cut(s)	182
MscI	TGGCCA	1 cut(s)	59
MseI	TTAA	3 cut(s)	81, 333, 416
MslI	CAYNNNNRTG	1 cut(s)	573
Msp20I	TGGCCA	1 cut(s)	59
MspCI	CTTAAG	1 cut(s)	80
MspI	CCGG	1 cut(s)	516
MspR9I	CCNGG	1 cut(s)	241
MvaI	CCWGG	1 cut(s)	241
MwoI	GCNNNNNNNGC	1 cut(s)	310
NdeI	CATATG	2 cut(s)	472, 544
NdeII	GATC	1 cut(s)	253
NlaIII	CATG	2 cut(s)	29, 248
NlaIV	GGNNCC	2 cut(s)	329, 377
NmuCI	GTSAC	4 cut(s)	119, 403, 487, 535
NspI	RCATGY	1 cut(s)	248
PdmI	GAANNNNTTC	1 cut(s)	182
PfeI	GAWTC	1 cut(s)	601
PkrI	GCNGC	1 cut(s)	427
PleI	GAGTC	2 cut(s)	56, 542
PpsI	GAGTC	2 cut(s)	56, 542
PpuMI	RGGWCCY	2 cut(s)	327, 395
Psp5II	RGGWCCY	2 cut(s)	327, 395
Psp6I	CCWGG	1 cut(s)	239
PspEI	GGTNACC	1 cut(s)	119
PspFI	CCCAGC	1 cut(s)	156
PspGI	CCWGG	1 cut(s)	239
PspN4I	GGNNCC	2 cut(s)	329, 377
PspPI	GGNCC	3 cut(s)	327, 395, 518
PspPPI	RGGWCCY	2 cut(s)	327, 395
RsaI	GTAC	2 cut(s)	194, 362
RsaNI	GTAC	2 cut(s)	193, 361
RseI	CAYNNNNRTG	1 cut(s)	573
Rsr2I	CGGWCCG	1 cut(s)	518
RsrII	CGGWCCG	1 cut(s)	518
SaqAI	TTAA	3 cut(s)	81, 333, 416
SatI	GCNGC	1 cut(s)	426
Sau3AI	GATC	1 cut(s)	253
Sau96I	GGNCC	3 cut(s)	327, 395, 518
ScaI	AGTACT	1 cut(s)	194
SchI	GAGTC	2 cut(s)	57, 543
ScrFI	CCNGG	1 cut(s)	241
SduI	GDGCHC	3 cut(s)	165, 380, 506
SetI	ASST	8 cut(s)	87, 140, 315, 322, 345, 397, 513, 567
SfaNI	GCATC	1 cut(s)	455
SinI	GGWCC	3 cut(s)	327, 395, 518
SmiMI	CAYNNNNRTG	1 cut(s)	573
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
SsiI	CCGC	2 cut(s)	124, 521
SspMI	CTAG	2 cut(s)	71, 381
StyD4I	CCNGG	1 cut(s)	239
StyI	CCWWGG	3 cut(s)	134, 380, 441
TaaI	ACNGT	1 cut(s)	595
TaiI	ACGT	1 cut(s)	567
TaqI	TCGA	1 cut(s)	338
TatI	WGTACW	2 cut(s)	192, 360
TfiI	GAWTC	1 cut(s)	601
Tru1I	TTAA	3 cut(s)	81, 333, 416
Tru9I	TTAA	3 cut(s)	81, 333, 416
TseFI	GTSAC	4 cut(s)	119, 403, 487, 535
TseI	GCWGC	1 cut(s)	425
Tsp45I	GTSAC	4 cut(s)	119, 403, 487, 535
TspDTI	ATGAA	1 cut(s)	557
Vha464I	CTTAAG	1 cut(s)	80
VpaK11BI	GGWCC	3 cut(s)	327, 395, 518
XceI	RCATGY	1 cut(s)	248
XmaJI	CCTAGG	1 cut(s)	380
XmnI	GAANNNNTTC	1 cut(s)	182
XspI	CTAG	2 cut(s)	71, 381
ZrmI	AGTACT	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.