MD15G1359600.v1.1

Pentatricopeptide repeat-containing protein At1g19720-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0012631
Physical Location & Seq
Reverse (-)
43358667 .. 43362600
3934 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1359600.v1.1.491

Sequence Viewer

Length: 2217 bp
ATGGGAATCCTTCGGACTTCTTTGCTTCCCAGCAATCCCCTACTCGCGGAAGCTTCCCTCTCACAAAAACCCAGCAGTTCCCACAAACCCAAGTTCAAATTTCAAGCTTCCACCGCCACTACCGTCGTTTCCGCCACCGCCACACTCTCAAGCCCACCAAACCCGAAAGCCCATCTCCCCCTTCCCGCCAAAAAGACCGCCAAAGTCAGTCACAACCCAGAAGCTGCTCAACCTAGTTCTGAGATTGGTCGCTGCCTTTCTTTGCTAAAGAGCAACCCTTTGTCCGACTGTAGACAAATTCATGCCCAAGTTCTGAAGTTGGAAGCGTTTGAGGATAATGGTTGGGTAAGAAACAAGCTCGCTATGCTTTACTCTAAGAATAATGAGTTTTTAGACTATGCACGTAAAATGTTCAATGATATTCCCAACAGAACTGTACCCACTTATGCGGCGTTGATAAGCGCGTATTGTCGGTCGGAGTGGTGGGAAGATTTGTTTTTGGTGTTTAAGTTGATGGTTGATGAGGGCGTGATGCCTGATAAATATGTTGTGCCTACGGTTCTGAAAGCGTGTGCTCTGGTGAGGATGTTGAGGATTGGTAAGATGATTCATGGGTTTGTGATAAGGAAGGCTTTGGATTCCGATGTTTACGTGGGGAATGCGCTTATTGATTTTTATGCCAATTGCGGGGACTTCAGATCTGCAATGAGTGTGTTTGATGCAATGAGGGAAAGAGATGTGGTTTCGTGGACTGCCCTTGTTTCCGCTTTCATGAATGAAGGCATTTTTGAAGAGGCAATAGAGGTTTTTAAGTCCATGCAGCTGAATGGTGTCAAGCCTGACCTGATCTCTTGGAATGCGCTTGTATCGGGGTTTGCTCGGAATGGAGAGACTGATTTAGCTCTTCAGTATTTGGAAGCGATGCAGGAAGAAGGGTTGAGGCCGAGGGTTGGTACTTGGAATGGGATAATTTCCGGTTTTGTTCAGAATAACTTTTTCGAGGATGCTTTGGAAGTGTTCTATAATATGATATGTTTCCCCGAGGATCCAAATTCTGTTACAATTGCAAGCATTTTACCAGCTTGTTCAGGCTTAAAAGATTTAAACTTAGGCAGGGCTGTTCATGGATTTGCTCTAAAGCGTCAGCTTTGTGGGAACATTCACGTGGAGGGTTCGTTAATTGATATGTATTCAAAAAGCGGGATGAAAGATTATGCGGAGAGAATTTTTTCCAAGGCTGAGAGCAAAAGCATTTCTATGTGGAATGAGATGATTGCAGCTTATGTAAATGAAGGAGAAGCAAATAAGGGGTTAGAGCTTCTTAGAGCGATGCATCATCATGGCTTAAAACCTGATGTTGTATCTTATAACACAATATTGACCGGCCATGCAAGAAGCGGGCAAATAAATGAGGCATATGAGTTGCTTTATGAGATGGTCCGGATGGATTTGAAGCCAAATATTATTTCTTTCAACATTTTAATTTCTGGTTTTCAACAATTTGGGCTTAGTTTTGAAGCTTTACAACTGTTCCAGACCATGCGAGCCTCATCGAGTGGTTGCTTTGGAAATGATGTGCTCCATGAGTCAATTCAACCGAACTCCATTACTATTGCTGGTGCTCTTGCAGCTTGTGCTGATCTCAATCTACTATGTCAAGGGAAGGAAATCCACGGATACTTGTTGAAGACTGGCTTTGAGCATAATATCTATGTTTCAAGCGCATTGATCGACATGTATTCAAAATGTCTTGATATTGTTTCAGCGACTAAAGTATTTAGGAGAACTGAGGATAAAAACACAATCTGTTGGAATGCTTTGATTGCAGGCCATGTCAACAACAAGCAGCTGGACCGAGCTCTTGAACTTTTCGGTGAAATGCTGGAAGAAGGTCTTGGACCAAGCTCTATTACGCTTATGATACTTCTCCTTACTTGTGGTGATACAGAAGCTCTGAGATTTGGAAGAGAACTACACGGCTATATCATAAAGAGTCATCTTGATCAGTCTAATTATAGCCTTGCAATTGCCTTGATAGGCATGTATGCTAATTGTGGTAGTATCAAGGACGCCAAATCAGTCTTTGACTTTGAAGTTAAAGGGGATACTTCTGTATTGAACTCCATGCTTTCTGCTAATTCAACTAACGGAACAGCCAAGAAGGCCCTTGCCTGGTTTGGGGAGATGCAGTTAGCGGGGATTGAGCCACAGTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

739

Amino Acids

81.62

Weight (kDa)

6.06

Isoelectric Point (pI)

35.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 245 - 282 7.5e-08 PPR repeat family
PPR_3 PF13812 246 - 289 1.1e-06 Pentatricopeptide repeat domain
TPR_24 PF23276 249 - 342 1.7e-07 Fungal tetratrico peptide repeats
PPR_3 PF13812 273 - 329 7.2e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 276 - 308 6.2e-06 PPR repeat
PPR PF01535 283 - 313 5.8e-06 PPR repeat
PPR_2 PF13041 417 - 456 2.5e-06 PPR repeat family
TPR_24 PF23276 421 - 513 7e-06 Fungal tetratrico peptide repeats
PPR_3 PF13812 440 - 496 1.9e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 448 - 480 2.3e-09 PPR repeat
PPR_2 PF13041 451 - 498 4.3e-15 PPR repeat family
PPR PF01535 454 - 483 3.8e-06 PPR repeat
PPR_2 PF13041 599 - 644 7.3e-10 PPR repeat family
PPR PF01535 603 - 632 7.9e-07 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1368, 2215
AccI GTMKAC 1 cut(s) 292
AccII CGCG 2 cut(s) 47, 464
AccIII TCCGGA 1 cut(s) 1440
AclWI GGATC 2 cut(s) 1040, 1053
AcoI YGGCCR 1 cut(s) 1384
AcsI RAATTY 4 cut(s) 98, 297, 1051, 1224
AcuI CTGAAG 3 cut(s) 335, 679, 890
AcvI CACGTG 1 cut(s) 1165
AcyI GRCGYC 1 cut(s) 2070
AfaI GTAC 2 cut(s) 438, 955
AfiI CCNNNNNNNGG 5 cut(s) 46, 687, 950, 2172, 2178
AflIII ACRYGT 1 cut(s) 1734
AjnI CCWGG 1 cut(s) 2171
AjuI GAANNNNNNNTTGG 4 cut(s) 1450, 1482, 1878, 1910
Alw21I GWGCWC 4 cut(s) 577, 1581, 1624, 1861
Alw26I GTCTC 1 cut(s) 884
AlwI GGATC 2 cut(s) 1040, 1053
AlwNI CAGNNNCTG 1 cut(s) 224
Ama87I CYCGRG 1 cut(s) 1040
Aor13HI TCCGGA 1 cut(s) 1440
AoxI GGCC 4 cut(s) 941, 1384, 1828, 2163
ApeKI GCWGC 6 cut(s) 224, 252, 820, 1277, 1628, 1846
ApoI RAATTY 4 cut(s) 98, 297, 1051, 1224
Asp700I GAANNNNTTC 1 cut(s) 1228
AspLEI GCGC 4 cut(s) 464, 664, 862, 1724
AspS9I GGNCC 4 cut(s) 1438, 1852, 1898, 2164
AsuHPI GGTGA 3 cut(s) 592, 1886, 1952
AvaI CYCGRG 1 cut(s) 1040
AvaII GGWCC 3 cut(s) 1438, 1852, 1898
BaeI ACNNNNGTAYC 2 cut(s) 2097, 2130
BamHI GGATCC 1 cut(s) 1045
BanII GRGCYC 1 cut(s) 1861
BbrPI CACGTG 1 cut(s) 1165
BbsI GAAGAC 1 cut(s) 1694
Bbv12I GWGCWC 4 cut(s) 577, 1581, 1624, 1861
BbvI GCAGC 6 cut(s) 211, 239, 832, 1289, 1640, 1858
BccI CCATC 4 cut(s) 180, 508, 1429, 1438
BceAI ACGGC 1 cut(s) 1993
BciT130I CCWGG 1 cut(s) 2173
BciVI GTATCC 2 cut(s) 1670, 2098
BclI TGATCA 1 cut(s) 2002
BcoDI GTCTC 1 cut(s) 884
BfaI CTAG 1 cut(s) 234
BfmI CTRYAG 1 cut(s) 289
BfuI GTATCC 2 cut(s) 1670, 2098
BglI GCCNNNNNGGC 1 cut(s) 2162
BglII AGATCT 1 cut(s) 698
BisI GCNGC 7 cut(s) 225, 253, 450, 821, 1278, 1629, 1847
BlsI GCNGC 7 cut(s) 226, 254, 451, 822, 1279, 1630, 1848
Bme1390I CCNGG 1 cut(s) 2173
Bme18I GGWCC 3 cut(s) 1438, 1852, 1898
BmeT110I CYCGRG 1 cut(s) 1040
BmgT120I GGNCC 4 cut(s) 1438, 1852, 1898, 2164
BmiI GGNNCC 1 cut(s) 1047
BmrFI CCNGG 1 cut(s) 2173
BmsI GCATC 7 cut(s) 522, 709, 912, 994, 1320, 1342, 2175
BpiI GAAGAC 1 cut(s) 1694
BpuEI CTTGAG 1 cut(s) 133
BsaAI YACGTR 3 cut(s) 404, 652, 1165
BsaBI GATNNNNATC 1 cut(s) 1644
BsaHI GRCGYC 1 cut(s) 2070
BsaJI CCNNGG 4 cut(s) 944, 1041, 1233, 1672
BsaWI WCCGGW 2 cut(s) 974, 1440
BsaXI ACNNNNNCTCC 4 cut(s) 1160, 1190, 2174, 2204
Bsc4I CCNNNNNNNGG 5 cut(s) 46, 687, 950, 2172, 2178
Bse118I RCCGGY 1 cut(s) 1382
Bse1I ACTGG 1 cut(s) 1696
Bse3DI GCAATG 2 cut(s) 711, 729
Bse8I GATNNNNATC 1 cut(s) 1644
BseAI TCCGGA 1 cut(s) 1440
BseBI CCWGG 1 cut(s) 2173
BseDI CCNNGG 4 cut(s) 944, 1041, 1233, 1672
BseGI GGATG 4 cut(s) 591, 1009, 1209, 1449
BseJI GATNNNNATC 1 cut(s) 1644
BseLI CCNNNNNNNGG 5 cut(s) 46, 687, 950, 2172, 2178
BseMI GCAATG 2 cut(s) 711, 729
BseMII CTCAG 4 cut(s) 231, 1230, 1779, 1946
BseNI ACTGG 1 cut(s) 1696
BseXI GCAGC 6 cut(s) 211, 239, 832, 1289, 1640, 1858
BseYI CCCAGC 2 cut(s) 29, 71
Bsh1236I CGCG 2 cut(s) 47, 464
Bsh1285I CGRYCG 1 cut(s) 476
BshFI GGCC 4 cut(s) 943, 1386, 1830, 2165
BsiEI CGRYCG 1 cut(s) 476
BsiHKAI GWGCWC 4 cut(s) 577, 1581, 1624, 1861
BsiHKCI CYCGRG 1 cut(s) 1040
BsiSI CCGG 3 cut(s) 975, 1383, 1441
BslFI GGGAC 1 cut(s) 704
BslI CCNNNNNNNGG 5 cut(s) 46, 687, 950, 2172, 2178
BsmAI GTCTC 1 cut(s) 884
BsmFI GGGAC 1 cut(s) 704
BsmI GAATGC 3 cut(s) 664, 862, 1819
BsnI GGCC 4 cut(s) 943, 1386, 1830, 2165
BsoBI CYCGRG 1 cut(s) 1040
Bsp1286I GDGCHC 4 cut(s) 577, 1581, 1624, 1861
Bsp13I TCCGGA 1 cut(s) 1440
Bsp143I GATC 6 cut(s) 698, 846, 1045, 1639, 1728, 2002
BspANI GGCC 4 cut(s) 943, 1386, 1830, 2165
BspCNI CTCAG 4 cut(s) 232, 1231, 1780, 1947
BspEI TCCGGA 1 cut(s) 1440
BspFNI CGCG 2 cut(s) 47, 464
BspHI TCATGA 1 cut(s) 771
BspLI GGNNCC 1 cut(s) 1047
BspPI GGATC 2 cut(s) 1040, 1053
BspQI GCTCTTC 1 cut(s) 909
BsrDI GCAATG 2 cut(s) 711, 729
BsrFI RCCGGY 1 cut(s) 1382
BsrI ACTGG 1 cut(s) 1696
BssAI RCCGGY 1 cut(s) 1382
BssECI CCNNGG 4 cut(s) 944, 1041, 1233, 1672
BssMI GATC 6 cut(s) 698, 846, 1045, 1639, 1728, 2002
BssNI GRCGYC 1 cut(s) 2070
BssT1I CCWWGG 1 cut(s) 1233
Bst2UI CCWGG 1 cut(s) 2173
Bst4CI ACNGT 6 cut(s) 124, 290, 436, 559, 1530, 2211
Bst6I CTCTTC 3 cut(s) 786, 909, 1960
BstACI GRCGYC 1 cut(s) 2070
BstAPI GCANNNNNTGC 1 cut(s) 1634
BstBAI YACGTR 3 cut(s) 404, 652, 1165
BstC8I GCNNGC 5 cut(s) 360, 1069, 1400, 1545, 1828
BstDEI CTNAG 8 cut(s) 240, 375, 1108, 1239, 1322, 1508, 1788, 1955
BstDSI CCRYGG 1 cut(s) 1672
BstF5I GGATG 4 cut(s) 591, 1009, 1209, 1449
BstFNI CGCG 2 cut(s) 47, 464
BstHHI GCGC 4 cut(s) 464, 664, 862, 1724
BstKTI GATC 6 cut(s) 701, 849, 1048, 1642, 1731, 2005
BstMAI GTCTC 1 cut(s) 884
BstMBI GATC 6 cut(s) 698, 846, 1045, 1639, 1728, 2002
BstMCI CGRYCG 1 cut(s) 476
BstMWI GCNNNNNNNGC 6 cut(s) 113, 364, 1628, 1634, 1823, 2162
BstNI CCWGG 1 cut(s) 2173
BstNSI RCATGY 2 cut(s) 1738, 2044
BstSCI CCNGG 1 cut(s) 2171
BstSFI CTRYAG 1 cut(s) 289
BstUI CGCG 2 cut(s) 47, 464
BstV1I GCAGC 6 cut(s) 211, 239, 832, 1289, 1640, 1858
BstV2I GAAGAC 1 cut(s) 1694
BstX2I RGATCY 2 cut(s) 698, 1045
BstYI RGATCY 2 cut(s) 698, 1045
BsuI GTATCC 2 cut(s) 1670, 2098
BsuRI GGCC 4 cut(s) 943, 1386, 1830, 2165
BtgI CCRYGG 1 cut(s) 1672
BtgZI GCGATG 2 cut(s) 935, 1343
BtsCI GGATG 4 cut(s) 591, 1009, 1209, 1449
Cac8I GCNNGC 5 cut(s) 360, 1069, 1400, 1545, 1828
CaiI CAGNNNCTG 1 cut(s) 224
CciI TCATGA 1 cut(s) 771
CfoI GCGC 4 cut(s) 464, 664, 862, 1724
Cfr10I RCCGGY 1 cut(s) 1382
Cfr13I GGNCC 4 cut(s) 1438, 1852, 1898, 2164
CseI GACGC 2 cut(s) 1130, 2078
Csp6I GTAC 2 cut(s) 437, 954
CviQI GTAC 2 cut(s) 437, 954
DdeI CTNAG 8 cut(s) 240, 375, 1108, 1239, 1322, 1508, 1788, 1955
DpnI GATC 6 cut(s) 700, 848, 1047, 1641, 1730, 2004
DpnII GATC 6 cut(s) 698, 846, 1045, 1639, 1728, 2002
DraI TTTAAA 1 cut(s) 1104
EaeI YGGCCR 1 cut(s) 1384
Eam1104I CTCTTC 3 cut(s) 786, 909, 1960
EarI CTCTTC 3 cut(s) 786, 909, 1960
EciI GGCGGA 1 cut(s) 121
Ecl136II GAGCTC 1 cut(s) 1859
Eco130I CCWWGG 1 cut(s) 1233
Eco24I GRGCYC 1 cut(s) 1861
Eco47I GGWCC 3 cut(s) 1438, 1852, 1898
Eco53kI GAGCTC 1 cut(s) 1859
Eco57I CTGAAG 3 cut(s) 335, 679, 890
Eco72I CACGTG 1 cut(s) 1165
Eco88I CYCGRG 1 cut(s) 1040
EcoICRI GAGCTC 1 cut(s) 1859
EcoO109I RGGNCCY 1 cut(s) 2164
EcoRII CCWGG 1 cut(s) 2171
EcoT14I CCWWGG 1 cut(s) 1233
EcoT22I ATGCAT 1 cut(s) 1335
EcoT38I GRGCYC 1 cut(s) 1861
ErhI CCWWGG 1 cut(s) 1233
FalI AAGNNNNNCTT 6 cut(s) 616, 648, 1679, 1711, 1878, 1910
FaqI GGGAC 1 cut(s) 704
FauI CCCGC 5 cut(s) 193, 680, 1193, 1391, 2188
FauNDI CATATG 1 cut(s) 1417
FbaI TGATCA 1 cut(s) 2002
FblI GTMKAC 1 cut(s) 292
Fnu4HI GCNGC 7 cut(s) 225, 253, 450, 821, 1278, 1629, 1847
FokI GGATG 4 cut(s) 598, 1016, 1216, 1456
FriOI GRGCYC 1 cut(s) 1861
Fsp4HI GCNGC 7 cut(s) 225, 253, 450, 821, 1278, 1629, 1847
FspBI CTAG 1 cut(s) 234
GlaI GCGC 4 cut(s) 463, 663, 861, 1723
GluI GCNGC 7 cut(s) 225, 253, 450, 821, 1278, 1629, 1847
GsaI CCCAGC 2 cut(s) 33, 75
HaeIII GGCC 4 cut(s) 943, 1386, 1830, 2165
HapII CCGG 3 cut(s) 975, 1383, 1441
HgaI GACGC 2 cut(s) 1130, 2078
HhaI GCGC 4 cut(s) 464, 664, 862, 1724
Hin1I GRCGYC 1 cut(s) 2070
Hin6I GCGC 4 cut(s) 462, 662, 860, 1722
HinP1I GCGC 4 cut(s) 462, 662, 860, 1722
HincII GTYRAC 1 cut(s) 1837
HindII GTYRAC 1 cut(s) 1837
HindIII AAGCTT 3 cut(s) 51, 105, 1518
HinfI GANTC 5 cut(s) 6, 607, 638, 1586, 1993
HpaII CCGG 3 cut(s) 975, 1383, 1441
HphI GGTGA 3 cut(s) 592, 1886, 1952
Hpy166II GTNNAC 4 cut(s) 293, 649, 750, 1837
Hpy188III TCNNGA 6 cut(s) 772, 1441, 1534, 1751, 1862, 2000
Hpy8I GTNNAC 4 cut(s) 293, 649, 750, 1837
Hpy99I CGWCG 1 cut(s) 128
HpyAV CCTTC 9 cut(s) 20, 191, 622, 773, 926, 1286, 1657, 1883, 2155
HpyCH4III ACNGT 6 cut(s) 124, 290, 436, 559, 1530, 2211
HpyCH4IV ACGT 3 cut(s) 403, 651, 1164
HpyF10VI GCNNNNNNNGC 6 cut(s) 113, 364, 1628, 1634, 1823, 2162
HpyF3I CTNAG 8 cut(s) 240, 375, 1108, 1239, 1322, 1508, 1788, 1955
HpySE526I ACGT 3 cut(s) 403, 651, 1164
Hsp92I GRCGYC 1 cut(s) 2070
HspAI GCGC 4 cut(s) 462, 662, 860, 1722
Kpn2I TCCGGA 1 cut(s) 1440
Ksp22I TGATCA 1 cut(s) 2002
Kzo9I GATC 6 cut(s) 698, 846, 1045, 1639, 1728, 2002
LguI GCTCTTC 1 cut(s) 909
LmnI GCTCC 1 cut(s) 1584
Lsp1109I GCAGC 6 cut(s) 211, 239, 832, 1289, 1640, 1858
LweI GCATC 7 cut(s) 522, 709, 912, 994, 1320, 1342, 2175
MaeI CTAG 1 cut(s) 234
MaeII ACGT 3 cut(s) 403, 651, 1164
MaeIII GTNAC 2 cut(s) 209, 1057
MalI GATC 6 cut(s) 700, 848, 1047, 1641, 1730, 2004
MboI GATC 6 cut(s) 698, 846, 1045, 1639, 1728, 2002
MboII GAAGA 7 cut(s) 500, 803, 896, 941, 1699, 1898, 1977
MfeI CAATTG 3 cut(s) 682, 1062, 2025
MflI RGATCY 2 cut(s) 698, 1045
MhlI GDGCHC 4 cut(s) 577, 1581, 1624, 1861
MlyI GAGTC 2 cut(s) 1595, 2002
MmeI TCCRAC 4 cut(s) 300, 309, 456, 1790
Mph1103I ATGCAT 1 cut(s) 1335
MroI TCCGGA 1 cut(s) 1440
MroXI GAANNNNTTC 1 cut(s) 1228
MseI TTAA 8 cut(s) 507, 810, 1094, 1103, 1178, 1346, 1481, 2097
MslI CAYNNNNRTG 3 cut(s) 1163, 1256, 1338
MspA1I CMGCKG 2 cut(s) 823, 1849
MspI CCGG 3 cut(s) 975, 1383, 1441
MspR9I CCNGG 1 cut(s) 2173
MunI CAATTG 3 cut(s) 682, 1062, 2025
Mva1269I GAATGC 3 cut(s) 664, 862, 1819
MvaI CCWGG 1 cut(s) 2173
MvnI CGCG 2 cut(s) 47, 464
MwoI GCNNNNNNNGC 6 cut(s) 113, 364, 1628, 1634, 1823, 2162
NdeI CATATG 1 cut(s) 1417
NdeII GATC 6 cut(s) 698, 846, 1045, 1639, 1728, 2002
NlaIV GGNNCC 1 cut(s) 1047
NmeAIII GCCGAG 1 cut(s) 969
NmuCI GTSAC 1 cut(s) 209
NsiI ATGCAT 1 cut(s) 1335
NspI RCATGY 2 cut(s) 1738, 2044
PagI TCATGA 1 cut(s) 771
PciI ACATGT 1 cut(s) 1734
PciSI GCTCTTC 1 cut(s) 909
PctI GAATGC 3 cut(s) 664, 862, 1819
PdmI GAANNNNTTC 1 cut(s) 1228
PfeI GAWTC 3 cut(s) 6, 607, 638
PkrI GCNGC 7 cut(s) 226, 254, 451, 822, 1279, 1630, 1848
PleI GAGTC 2 cut(s) 1594, 2001
PmaCI CACGTG 1 cut(s) 1165
PmlI CACGTG 1 cut(s) 1165
PpsI GAGTC 2 cut(s) 1594, 2001
Ppu21I YACGTR 3 cut(s) 404, 652, 1165
PscI ACATGT 1 cut(s) 1734
PsiI TTATAA 2 cut(s) 1368, 2215
Psp124BI GAGCTC 1 cut(s) 1861
Psp6I CCWGG 1 cut(s) 2171
PspCI CACGTG 1 cut(s) 1165
PspFI CCCAGC 2 cut(s) 29, 71
PspGI CCWGG 1 cut(s) 2171
PspN4I GGNNCC 1 cut(s) 1047
PspPI GGNCC 4 cut(s) 1438, 1852, 1898, 2164
PstNI CAGNNNCTG 1 cut(s) 224
PsuI RGATCY 2 cut(s) 698, 1045
PvuII CAGCTG 2 cut(s) 823, 1849
RsaI GTAC 2 cut(s) 438, 955
RsaNI GTAC 2 cut(s) 437, 954
RseI CAYNNNNRTG 3 cut(s) 1163, 1256, 1338
SacI GAGCTC 1 cut(s) 1861
SapI GCTCTTC 1 cut(s) 909
SaqAI TTAA 8 cut(s) 507, 810, 1094, 1103, 1178, 1346, 1481, 2097
SatI GCNGC 7 cut(s) 225, 253, 450, 821, 1278, 1629, 1847
Sau3AI GATC 6 cut(s) 698, 846, 1045, 1639, 1728, 2002
Sau96I GGNCC 4 cut(s) 1438, 1852, 1898, 2164
SchI GAGTC 2 cut(s) 1595, 2002
ScrFI CCNGG 1 cut(s) 2173
SduI GDGCHC 4 cut(s) 577, 1581, 1624, 1861
SfaNI GCATC 7 cut(s) 522, 709, 912, 994, 1320, 1342, 2175
SfcI CTRYAG 1 cut(s) 289
SinI GGWCC 3 cut(s) 1438, 1852, 1898
SmiMI CAYNNNNRTG 3 cut(s) 1163, 1256, 1338
SmlI CTYRAG 1 cut(s) 148
SmoI CTYRAG 1 cut(s) 148
SspI AATATT 2 cut(s) 1377, 1462
SspMI CTAG 1 cut(s) 234
SstI GAGCTC 1 cut(s) 1861
StyD4I CCNGG 1 cut(s) 2171
StyI CCWWGG 1 cut(s) 1233
TaaI ACNGT 6 cut(s) 124, 290, 436, 559, 1530, 2211
TaiI ACGT 3 cut(s) 406, 654, 1167
TaqI TCGA 3 cut(s) 999, 1553, 1731
TaqII GACCGA 2 cut(s) 462, 1869
TauI GCSGC 1 cut(s) 452
TfiI GAWTC 3 cut(s) 6, 607, 638
Tru1I TTAA 8 cut(s) 507, 810, 1094, 1103, 1178, 1346, 1481, 2097
Tru9I TTAA 8 cut(s) 507, 810, 1094, 1103, 1178, 1346, 1481, 2097
TseFI GTSAC 1 cut(s) 209
TseI GCWGC 6 cut(s) 224, 252, 820, 1277, 1628, 1846
Tsp45I GTSAC 1 cut(s) 209
TspDTI ATGAA 8 cut(s) 290, 599, 760, 788, 792, 1112, 1220, 1305
TspGWI ACGGA 2 cut(s) 1689, 2163
VpaK11BI GGWCC 3 cut(s) 1438, 1852, 1898
XapI RAATTY 4 cut(s) 98, 297, 1051, 1224
XceI RCATGY 2 cut(s) 1738, 2044
XmiI GTMKAC 1 cut(s) 292
XmnI GAANNNNTTC 1 cut(s) 1228
XspI CTAG 1 cut(s) 234
Zsp2I ATGCAT 1 cut(s) 1335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.