Rorug07G0336800

Pentatricopeptide repeat-containing protein At1g19720-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0012631
Physical Location & Seq
Forward (+)
37020657 .. 37025562
4906 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0336800.1

Sequence Viewer

Length: 330 bp
ATGATGAAGACTGCGTATTGGGTTTTGGTTGTTTCCAGAATCTTGAGCTTTTGCGCATCTGGGACTTCCTCGATTGAGAATTATCACCAAGCGTTTCCTATTGTGGAACCAGATCCTGGTCATACAAAACTTCGTCTTTCAAAGGAAGGCCTAGAGGCCATTGAAAGAATAAAAACTCCGATTGCAGCTGTTGCAGTTATTGGGCCATACCGCTCTGGGAAATCTTTCTTGCTCAATCAGCTGCTCTCCCTTTCTTGTTATGAAGGCATCATTTTGTCTCCACCGCCGAGCCCTGCTACCAATCTTTCAGAGGTTACAGAGAGGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

109

Amino Acids

11.92

Weight (kDa)

6.72

Isoelectric Point (pI)

44.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GBP PF02263 43 - 83 8.2e-09 Guanylate-binding protein, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 55
AccB7I CCANNNNNTGG 1 cut(s) 116
AccBSI CCGCTC 1 cut(s) 213
AciI CCGC 2 cut(s) 211, 284
AclWI GGATC 1 cut(s) 107
AfiI CCNNNNNNNGG 1 cut(s) 116
AgsI TTSAA 2 cut(s) 141, 164
AjnI CCWGG 1 cut(s) 115
AluBI AGCT 3 cut(s) 48, 188, 241
AluI AGCT 3 cut(s) 48, 188, 241
Alw26I GTCTC 1 cut(s) 282
AlwI GGATC 1 cut(s) 107
AlwNI CAGNNNCTG 1 cut(s) 116
AoxI GGCC 3 cut(s) 148, 156, 203
ApeKI GCWGC 2 cut(s) 185, 241
Asp700I GAANNNNTTC 1 cut(s) 224
AspLEI GCGC 1 cut(s) 56
AspS9I GGNCC 1 cut(s) 203
AsuHPI GGTGA 1 cut(s) 77
BanII GRGCYC 1 cut(s) 293
BbsI GAAGAC 1 cut(s) 14
BbvI GCAGC 2 cut(s) 197, 228
BciT130I CCWGG 1 cut(s) 117
BcoDI GTCTC 1 cut(s) 282
BfaI CTAG 1 cut(s) 152
BisI GCNGC 2 cut(s) 186, 242
BlsI GCNGC 2 cut(s) 187, 243
Bme1390I CCNGG 1 cut(s) 117
BmgT120I GGNCC 1 cut(s) 203
BmiI GGNNCC 1 cut(s) 108
BmrFI CCNGG 1 cut(s) 117
BmsI GCATC 2 cut(s) 65, 276
BpiI GAAGAC 1 cut(s) 14
BpuEI CTTGAG 1 cut(s) 64
Bsc4I CCNNNNNNNGG 1 cut(s) 116
BseBI CCWGG 1 cut(s) 117
BseLI CCNNNNNNNGG 1 cut(s) 116
BseXI GCAGC 2 cut(s) 197, 228
BshFI GGCC 3 cut(s) 150, 158, 205
BslFI GGGAC 1 cut(s) 76
BslI CCNNNNNNNGG 1 cut(s) 116
BsmAI GTCTC 1 cut(s) 282
BsmFI GGGAC 1 cut(s) 76
BsnI GGCC 3 cut(s) 150, 158, 205
Bsp1286I GDGCHC 1 cut(s) 293
Bsp143I GATC 1 cut(s) 112
BspACI CCGC 2 cut(s) 211, 284
BspANI GGCC 3 cut(s) 150, 158, 205
BspLI GGNNCC 1 cut(s) 108
BspPI GGATC 1 cut(s) 107
BsrBI CCGCTC 1 cut(s) 213
BssMI GATC 1 cut(s) 112
Bst2UI CCWGG 1 cut(s) 117
BstAPI GCANNNNNTGC 1 cut(s) 191
BstHHI GCGC 1 cut(s) 56
BstKTI GATC 1 cut(s) 115
BstMAI GTCTC 1 cut(s) 282
BstMBI GATC 1 cut(s) 112
BstMWI GCNNNNNNNGC 2 cut(s) 191, 238
BstNI CCWGG 1 cut(s) 117
BstSCI CCNGG 1 cut(s) 115
BstV1I GCAGC 2 cut(s) 197, 228
BstV2I GAAGAC 1 cut(s) 14
BstX2I RGATCY 1 cut(s) 112
BstYI RGATCY 1 cut(s) 112
BsuRI GGCC 3 cut(s) 150, 158, 205
CaiI CAGNNNCTG 1 cut(s) 116
CfoI GCGC 1 cut(s) 56
Cfr13I GGNCC 1 cut(s) 203
CviJI RGCY 7 cut(s) 48, 150, 158, 188, 205, 241, 291
CviKI_1 RGCY 7 cut(s) 48, 150, 158, 188, 205, 241, 291
DpnI GATC 1 cut(s) 114
DpnII GATC 1 cut(s) 112
Eco147I AGGCCT 1 cut(s) 150
Eco24I GRGCYC 1 cut(s) 293
EcoRII CCWGG 1 cut(s) 115
EcoT38I GRGCYC 1 cut(s) 293
FaiI YATR 3 cut(s) 123, 208, 261
FaqI GGGAC 1 cut(s) 76
Fnu4HI GCNGC 2 cut(s) 186, 242
FriOI GRGCYC 1 cut(s) 293
Fsp4HI GCNGC 2 cut(s) 186, 242
FspBI CTAG 1 cut(s) 152
FspI TGCGCA 1 cut(s) 55
GlaI GCGC 1 cut(s) 55
GluI GCNGC 2 cut(s) 186, 242
HaeIII GGCC 3 cut(s) 150, 158, 205
HhaI GCGC 1 cut(s) 56
Hin6I GCGC 1 cut(s) 54
HinP1I GCGC 1 cut(s) 54
HinfI GANTC 1 cut(s) 39
HphI GGTGA 1 cut(s) 77
Hpy188I TCNGA 2 cut(s) 180, 310
Hpy188III TCNNGA 2 cut(s) 36, 43
HpyAV CCTTC 2 cut(s) 140, 257
HpyCH4V TGCA 2 cut(s) 185, 194
HpyF10VI GCNNNNNNNGC 2 cut(s) 191, 238
HspAI GCGC 1 cut(s) 54
Kzo9I GATC 1 cut(s) 112
LpnPI CCDG 7 cut(s) 45, 49, 102, 123, 129, 201, 306
Lsp1109I GCAGC 2 cut(s) 197, 228
LweI GCATC 2 cut(s) 65, 276
MaeI CTAG 1 cut(s) 152
MaeIII GTNAC 1 cut(s) 313
MalI GATC 1 cut(s) 114
MbiI CCGCTC 1 cut(s) 213
MboI GATC 1 cut(s) 112
MboII GAAGA 1 cut(s) 19
MflI RGATCY 1 cut(s) 112
MhlI GDGCHC 1 cut(s) 293
MluCI AATT 1 cut(s) 79
MnlI CCTC 4 cut(s) 79, 148, 304, 315
MroXI GAANNNNTTC 1 cut(s) 224
MseI TTAA 1 cut(s) 328
MspA1I CMGCKG 2 cut(s) 188, 241
MspR9I CCNGG 1 cut(s) 117
MvaI CCWGG 1 cut(s) 117
MwoI GCNNNNNNNGC 2 cut(s) 191, 238
NdeII GATC 1 cut(s) 112
NlaIV GGNNCC 1 cut(s) 108
NmeAIII GCCGAG 1 cut(s) 312
NsbI TGCGCA 1 cut(s) 55
PceI AGGCCT 1 cut(s) 150
PdmI GAANNNNTTC 1 cut(s) 224
PfeI GAWTC 1 cut(s) 39
PflMI CCANNNNNTGG 1 cut(s) 116
PkrI GCNGC 2 cut(s) 187, 243
Psp6I CCWGG 1 cut(s) 115
PspGI CCWGG 1 cut(s) 115
PspN4I GGNNCC 1 cut(s) 108
PspPI GGNCC 1 cut(s) 203
PstNI CAGNNNCTG 1 cut(s) 116
PsuI RGATCY 1 cut(s) 112
PvuII CAGCTG 2 cut(s) 188, 241
SaqAI TTAA 1 cut(s) 328
SatI GCNGC 2 cut(s) 186, 242
Sau3AI GATC 1 cut(s) 112
Sau96I GGNCC 1 cut(s) 203
ScrFI CCNGG 1 cut(s) 117
SduI GDGCHC 1 cut(s) 293
SetI ASST 4 cut(s) 50, 190, 243, 315
SfaNI GCATC 2 cut(s) 65, 276
SmlI CTYRAG 1 cut(s) 43
SmoI CTYRAG 1 cut(s) 43
Sse9I AATT 1 cut(s) 79
SseBI AGGCCT 1 cut(s) 150
SsiI CCGC 2 cut(s) 211, 284
SspMI CTAG 1 cut(s) 152
StuI AGGCCT 1 cut(s) 150
StyD4I CCNGG 1 cut(s) 115
TaqI TCGA 1 cut(s) 71
TasI AATT 1 cut(s) 79
TfiI GAWTC 1 cut(s) 39
Tru1I TTAA 1 cut(s) 328
Tru9I TTAA 1 cut(s) 328
TseI GCWGC 2 cut(s) 185, 241
TspDTI ATGAA 2 cut(s) 20, 276
Van91I CCANNNNNTGG 1 cut(s) 116
XmnI GAANNNNTTC 1 cut(s) 224
XspI CTAG 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.