Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0012631

Physical Location & Seq

Genomic Coordinates Reverse (-)

36986250 .. 36988980

Gene Structure 2731 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0336700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGGTTTCAATCTAGACATCGATCGAAATACCGGAGTTGAAACTAGGGTTCCATTTGTGGGTTCTTCGATTTGGGGATTTGGGGGTTTCTCGGCGATTCTTGAGAATCTGCAGCAGACCATGTTCTCCAACCATTCCAAGGCCTCTGCATCACTATTTTCAACAATTGGAAATAGGTTTAGGCTAGCAACTCATGCAAATTTCAAAGATTTTGTCCTTACTGCTGGGTTGGAGTTCTATCCCTTAGGTGGAGATCCAAAAGTTCTTGCCGAATGGCACTCTCATGTTGCTGAGGCACTAAAAATACCGATTCATAGATTTTTCACAATGCCACGGACGCCTACCAGTGAATTCCCTCATCCTCTATCCCGTGTCAAGCAACATATTGGATATAGACTATCATATCAAATAGTCGATGCATTAATTTGGCTAGGAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

146

Amino Acids

16.41

Weight (kDa)

9.16

Isoelectric Point (pI)

25.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012631)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g38470
malus_domestica	MD15G1359600.v1.1
prunus_persica	Prupe.1G507300_v2.0.a1 Prupe.1G507300_v2.0.a1 Prupe.1G507300_v2.0.a1
pyrus_communis	pycom08g14890 pycom15g32200
rosa_chinensis	RchiOBHm_Chr7g0240511
rosa_laevigata	RLG00000000674
rosa_multiflora	Rmu_sc0005327.1_g000007 Rmu_sc0016269.1_g000004
rosa_roxburghii	Rroxscaffold_3G00219910
rosa_rugosa	Rorug07G0336700 Rorug07G0336800
rosa_samantha	Rh7AG491200 Rh7BG463800 Rh7CG507200 Rh7DG475000
rosa_wichuraiana	Rw7G041160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	248
AcsI	RAATTY	3 cut(s)	199, 350, 435
AcyI	GRCGYC	1 cut(s)	338
AfiI	CCNNNNNNNGG	3 cut(s)	59, 139, 248
AgsI	TTSAA	4 cut(s)	10, 41, 162, 205
AlwI	GGATC	1 cut(s)	248
AoxI	GGCC	1 cut(s)	141
ApeKI	GCWGC	1 cut(s)	112
ApoI	RAATTY	3 cut(s)	199, 350, 435
ArsI	GACNNNNNNTTYG	2 cut(s)	198, 230
AseI	ATTAAT	1 cut(s)	422
AsuNHI	GCTAGC	1 cut(s)	184
AxyI	CCTNAGG	1 cut(s)	244
BbvCI	CCTCAGC	1 cut(s)	291
BbvI	GCAGC	1 cut(s)	124
BfaI	CTAG	4 cut(s)	14, 45, 185, 431
BfmI	CTRYAG	1 cut(s)	110
BisI	GCNGC	1 cut(s)	113
BlsI	GCNGC	1 cut(s)	114
BmiI	GGNNCC	1 cut(s)	51
BmsI	GCATC	2 cut(s)	158, 406
BmtI	GCTAGC	1 cut(s)	188
Bpu10I	CCTNAGC	1 cut(s)	291
BpuEI	CTTGAG	1 cut(s)	122
Bsa29I	ATCGAT	1 cut(s)	21
BsaHI	GRCGYC	1 cut(s)	338
BsaJI	CCNNGG	2 cut(s)	138, 332
BsaWI	WCCGGW	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	3 cut(s)	59, 139, 248
Bse1I	ACTGG	1 cut(s)	345
Bse21I	CCTNAGG	1 cut(s)	244
BseCI	ATCGAT	1 cut(s)	21
BseDI	CCNNGG	2 cut(s)	138, 332
BseGI	GGATG	1 cut(s)	358
BseLI	CCNNNNNNNGG	3 cut(s)	59, 139, 248
BseMII	CTCAG	1 cut(s)	282
BseNI	ACTGG	1 cut(s)	345
BseXI	GCAGC	1 cut(s)	124
BseYI	CCCAGC	1 cut(s)	224
Bsh1285I	CGRYCG	1 cut(s)	25
BshFI	GGCC	1 cut(s)	143
BshVI	ATCGAT	1 cut(s)	21
BsiEI	CGRYCG	1 cut(s)	25
BsiSI	CCGG	1 cut(s)	33
BslI	CCNNNNNNNGG	3 cut(s)	59, 139, 248
BsnI	GGCC	1 cut(s)	143
Bsp143I	GATC	2 cut(s)	22, 253
BspANI	GGCC	1 cut(s)	143
BspCNI	CTCAG	1 cut(s)	283
BspDI	ATCGAT	1 cut(s)	21
BspLI	GGNNCC	1 cut(s)	51
BspMAI	CTGCAG	1 cut(s)	114
BspOI	GCTAGC	1 cut(s)	188
BspPI	GGATC	1 cut(s)	248
BsrI	ACTGG	1 cut(s)	345
BssECI	CCNNGG	2 cut(s)	138, 332
BssMI	GATC	2 cut(s)	22, 253
BssNI	GRCGYC	1 cut(s)	338
BssT1I	CCWWGG	1 cut(s)	138
BstACI	GRCGYC	1 cut(s)	338
BstAPI	GCANNNNNTGC	1 cut(s)	194
BstC8I	GCNNGC	1 cut(s)	186
BstDEI	CTNAG	2 cut(s)	244, 291
BstDSI	CCRYGG	1 cut(s)	332
BstF5I	GGATG	1 cut(s)	358
BstKTI	GATC	2 cut(s)	25, 256
BstMBI	GATC	2 cut(s)	22, 253
BstMCI	CGRYCG	1 cut(s)	25
BstMWI	GCNNNNNNNGC	2 cut(s)	194, 337
BstSFI	CTRYAG	1 cut(s)	110
BstV1I	GCAGC	1 cut(s)	124
BstX2I	RGATCY	1 cut(s)	253
BstYI	RGATCY	1 cut(s)	253
Bsu15I	ATCGAT	1 cut(s)	21
Bsu36I	CCTNAGG	1 cut(s)	244
BsuRI	GGCC	1 cut(s)	143
BsuTUI	ATCGAT	1 cut(s)	21
BtgI	CCRYGG	1 cut(s)	332
BtsCI	GGATG	1 cut(s)	358
BtsIMutI	CAGTG	1 cut(s)	352
Cac8I	GCNNGC	1 cut(s)	186
ClaI	ATCGAT	1 cut(s)	21
CseI	GACGC	1 cut(s)	346
CviAII	CATG	3 cut(s)	121, 194, 284
CviJI	RGCY	3 cut(s)	143, 184, 430
CviKI_1	RGCY	3 cut(s)	143, 184, 430
DdeI	CTNAG	2 cut(s)	244, 291
DpnI	GATC	2 cut(s)	24, 255
DpnII	GATC	2 cut(s)	22, 253
Eco130I	CCWWGG	1 cut(s)	138
Eco147I	AGGCCT	1 cut(s)	143
Eco81I	CCTNAGG	1 cut(s)	244
EcoRI	GAATTC	1 cut(s)	350
EcoT14I	CCWWGG	1 cut(s)	138
EcoT22I	ATGCAT	1 cut(s)	421
ErhI	CCWWGG	1 cut(s)	138
FaeI	CATG	3 cut(s)	124, 197, 287
FaiI	YATR	7 cut(s)	122, 195, 285, 315, 384, 393, 403
FatI	CATG	3 cut(s)	120, 193, 283
Fnu4HI	GCNGC	1 cut(s)	113
FokI	GGATG	1 cut(s)	345
Fsp4HI	GCNGC	1 cut(s)	113
FspBI	CTAG	4 cut(s)	14, 45, 185, 431
GluI	GCNGC	1 cut(s)	113
GsaI	CCCAGC	1 cut(s)	228
HaeIII	GGCC	1 cut(s)	143
HapII	CCGG	1 cut(s)	33
HgaI	GACGC	1 cut(s)	346
Hin1I	GRCGYC	1 cut(s)	338
Hin1II	CATG	3 cut(s)	124, 197, 287
HinfI	GANTC	3 cut(s)	97, 106, 310
HpaII	CCGG	1 cut(s)	33
Hpy188III	TCNNGA	2 cut(s)	14, 101
HpyCH4V	TGCA	4 cut(s)	112, 149, 197, 419
HpyF10VI	GCNNNNNNNGC	2 cut(s)	194, 337
HpyF3I	CTNAG	2 cut(s)	244, 291
Hsp92I	GRCGYC	1 cut(s)	338
Hsp92II	CATG	3 cut(s)	124, 197, 287
Kzo9I	GATC	2 cut(s)	22, 253
LpnPI	CCDG	3 cut(s)	46, 210, 358
Lsp1109I	GCAGC	1 cut(s)	124
LweI	GCATC	2 cut(s)	158, 406
MaeI	CTAG	4 cut(s)	14, 45, 185, 431
MalI	GATC	2 cut(s)	24, 255
MboI	GATC	2 cut(s)	22, 253
MboII	GAAGA	1 cut(s)	57
MfeI	CAATTG	1 cut(s)	165
MflI	RGATCY	1 cut(s)	253
MluCI	AATT	5 cut(s)	165, 199, 350, 423, 435
MmeI	TCCRAC	2 cut(s)	153, 210
MnlI	CCTC	4 cut(s)	154, 286, 366, 372
Mph1103I	ATGCAT	1 cut(s)	421
MseI	TTAA	1 cut(s)	422
MslI	CAYNNNNRTG	1 cut(s)	282
MspI	CCGG	1 cut(s)	33
MunI	CAATTG	1 cut(s)	165
MwoI	GCNNNNNNNGC	2 cut(s)	194, 337
NdeII	GATC	2 cut(s)	22, 253
NheI	GCTAGC	1 cut(s)	184
NlaIII	CATG	3 cut(s)	124, 197, 287
NlaIV	GGNNCC	1 cut(s)	51
NmeAIII	GCCGAG	1 cut(s)	71
NsiI	ATGCAT	1 cut(s)	421
PceI	AGGCCT	1 cut(s)	143
PfeI	GAWTC	3 cut(s)	97, 106, 310
PkrI	GCNGC	1 cut(s)	114
Ple19I	CGATCG	1 cut(s)	25
PshBI	ATTAAT	1 cut(s)	422
PspFI	CCCAGC	1 cut(s)	224
PspN4I	GGNNCC	1 cut(s)	51
PstI	CTGCAG	1 cut(s)	114
PsuI	RGATCY	1 cut(s)	253
PvuI	CGATCG	1 cut(s)	25
RseI	CAYNNNNRTG	1 cut(s)	282
SaqAI	TTAA	1 cut(s)	422
SatI	GCNGC	1 cut(s)	113
Sau3AI	GATC	2 cut(s)	22, 253
SetI	ASST	2 cut(s)	179, 250
SfaNI	GCATC	2 cut(s)	158, 406
SfcI	CTRYAG	1 cut(s)	110
SmiMI	CAYNNNNRTG	1 cut(s)	282
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
Sse9I	AATT	5 cut(s)	165, 199, 350, 423, 435
SseBI	AGGCCT	1 cut(s)	143
SspMI	CTAG	4 cut(s)	14, 45, 185, 431
StuI	AGGCCT	1 cut(s)	143
StyI	CCWWGG	1 cut(s)	138
TaqI	TCGA	4 cut(s)	21, 25, 68, 414
TasI	AATT	5 cut(s)	165, 199, 350, 423, 435
TfiI	GAWTC	3 cut(s)	97, 106, 310
Tru1I	TTAA	1 cut(s)	422
Tru9I	TTAA	1 cut(s)	422
TscAI	CASTG	1 cut(s)	352
TseI	GCWGC	1 cut(s)	112
TspDTI	ATGAA	1 cut(s)	302
TspGWI	ACGGA	1 cut(s)	349
TspRI	CASTG	1 cut(s)	352
VspI	ATTAAT	1 cut(s)	422
XapI	RAATTY	3 cut(s)	199, 350, 435
XbaI	TCTAGA	1 cut(s)	13
XspI	CTAG	4 cut(s)	14, 45, 185, 431
Zsp2I	ATGCAT	1 cut(s)	421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.