Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0006001

Physical Location & Seq

Genomic Coordinates Reverse (-)

978995 .. 981510

Gene Structure 2516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1012700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2175 bp

ATGTTAATTAGATTGTTTGATCATGCTTCTTCTTCGTTTTCATATATACATGCCTATATAATCTTCCTTTGTTGCCTAATCCCGATTAACACATTAATGGCGTCCCATTTGGACTTGAGTCAGTTAAGTGGGTGCAAGAAGAGGAAGAGAGGTGAGAGGGTATTTAGGTTCAGGAGTTTTGGCGAAAACGGGTACCCGGTAGGGTTGGTAGGATCGTCATTCAGGGAAAATGTTAAGTCTCTCCTTGAATATGGGCATGTTGAGGGTAACCTAGCTGGCCATGGCATGCAATGCTGGTCGTTTCAGCTCCAAGTTCATCGCCATGCTCCTGGCCACGTCGTGCTATTTGTCATCGAAGAACCTATCGAGGCATCGCTCAATCACCATTGCAAGCAATGCCAATACGTTGGCTGGGGGCAGCATATGGTATGCAATAAGAATTATCATTTTGTGTTGCCTTCCTCGGACACAATGGTGGCAGCTTGCAGCTGGAATGGCAAAGGTGGCAACGCCTCCGATGGAGGCCAGCTACTACTGAACCCCACGACAACAAATAGTCGTAACGAGGGTAACTCGATGAATAATTTAGTGGAATTAGAGGGTCATATGCTGCATGGTGTCTTTCACTCTAACGGTTTCGGGCATTTGTTGTGTGTCAATGGGGTGGAAACCGGTTACGACTTGGCTGGTCACCAGATCCTGGACTTTTGGGATCGCTTATGCACCGGATTGCGTGCAAGGAAAGTGAGTTTGAACGACGTGGCACATAAAAGAGGGATGGAGTTGAGGCTAATCCACGGAGTAGCATACAGCGAGCCATGGTTTGGTCGTTGGGGTTACAAATTTGGCCGTGGAACATTTTGTGTCACGCAACAAATGTACCAAAAAGCCATTGAAGCTCTACAAGGCATCCCCTTATGCTTGCTCATTCACCATCTCGGCACATCCAACCATGAAATCGCTCTCATCTTCTCAAGGTATCACACATTGTCCGACAATTCTTTGGTCACTCTTGGCGACCTTTTCCATTTCATGCTAGAGCTCAAGTCGCGGTTGCCACCCACAGATCATCAAAATCCATTTATTGATCCAATCTATAACCCGGGAATGCTGATGGAAACGAATTGTAGATGGTCTTCGAAAAGAGTTGAGATGGCGACTCGGGTGATTGTTGAGGCCTTGAAGAGGGCTCAGTTTAGGTGGGTATCTAGACAAGAAGTTAGGGATGCCGCCCGTGCCTATGTAGGCGACACAGGGTTGCTAGATTTTGTGTTGAAGTCACTAGGAAACCACATTGTAGGAAATTACTTGGTTCGTCGCACGTTGAATCCAGTGACTAAAGTTCTTGAGTACTGCTTAGAAGACATCTCCAATCATGCTTCCCCTAATCATCGGGACGGTTTCCTCATGCACAGTCCGAAGGCGAAGGCTGCGTGGTACAAGCTTTCGAAGTTTCGGTTAATGAAGGATATGTTCTACATGTACAAGTACATTCTCAAGGACCAAAAGATGAGCAATGCCGGGATATTTTCGGCTATACCGATGGCTGTACGGATCATTCTCAATTCCAAGTACCTCGTGAAGGATTACTGCGGCGAGGTGGTGCCTATGAAAGTTGAATATTTAAGCATGGATGGAGAATCAAACATCTACTGCACAATAACACTAAAAAACAATTCCAAAGAAGATGACGACGATAATAGTAAGAGTATTAGAAACAACAACAATGCAATAATATTGCAACCCTACGAGTGTGTGACGTTAAAAAACAATGCTACATTTGATGATTTGAAGCAAGAAGTGGAGAGGAATTTCAAGGAGATCTACTGGGGGCTGAGGGGATTTGTGGTGGACTCAATTGCAAATCTGAACAATGCGAAGGGGACAGATTTGGTTTTTGGCATGGTTGAGGTGGGTCAAAAGATTGTGCTCGAGGGTAGGAGTAGCAAAAAGATGGGTGGAGTTAGAGAGATGTATGAATGTGGAGCAGTTAATTATGTCGTGGACTGTCCCTGTGGAGCTAAGGAAGACGATGGGGAAAGAATGGTGTCGTGTGACATTTGTGAAGTTAGGCAGCATACGCTTTGTGTTCGAATTCCGGACAGCGAACAAGTTCCTCACATATTTCTCTGCAATCGATGTGAAAGAGAAATCATACTTTTGCCTTCTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009791 GO:0009846 GO:0009856 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009987 GO:0010033 GO:0010208 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010927 GO:0010941 GO:0010942 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0022607 GO:0030198 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0042221 GO:0043062 GO:0043067 GO:0043068 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044464 GO:0044706 GO:0045229 GO:0045893 GO:0045935 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048466 GO:0048518 GO:0048522 GO:0048608 GO:0048646 GO:0048653 GO:0048654 GO:0048655 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051716 GO:0055046 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071396 GO:0071407 GO:0071495 GO:0071840 GO:0080090 GO:0085029 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD

Protein Analysis

725

Amino Acids

82.13

Weight (kDa)

8.06

Isoelectric Point (pI)

38.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_plant_repro	PF25874	377 - 455	3.3e-34	Winged helix-turn-helix domain in plant reproductive proteins
Ubiquitin_At1g33420	PF25565	546 - 647	5.6e-29	At1g33420-like, ubiquitin-like domain
PHD	PF00628	670 - 714	8.4e-07	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006001)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22260
fragaria_vesca	FvH4_4g35820 FvH4_4g35830 FvH4_4g35830
malus_domestica	MD16G1012700.v1.1
prunus_persica	Prupe.1G338600_v2.0.a1
pyrus_communis	pycom16g01190
rosa_chinensis	RchiOBHm_Chr4g0445351 RchiOBHm_Chr4g0445361
rosa_laevigata	RLG00000005745 RLG00000005746
rosa_multiflora	Rmu_sc0000050.1_g000007 Rmu_sc0000050.1_g000008 Rmu_sc0000050.1_g000009
rosa_roxburghii	Rroxscaffold_5G00385870 Rroxscaffold_5G00385880
rosa_rugosa	Rorug04G0361000
rosa_samantha	Rh4AG422000 Rh4AG422100 Rh4BG434000 Rh4BG434100 Rh4CG448900 Rh4CG449000 Rh4DG430000 Rh4DG430100
rosa_wichuraiana	Rw4G036200 Rw4G036210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	192
AccB1I	GGYRCC	2 cut(s)	192, 1603
AccB7I	CCANNNNNTGG	2 cut(s)	700, 824
AccII	CGCG	1 cut(s)	1051
AccIII	TCCGGA	1 cut(s)	2098
AciI	CCGC	3 cut(s)	1051, 1230, 1593
AclWI	GGATC	5 cut(s)	220, 691, 720, 1082, 1562
AcoI	YGGCCR	3 cut(s)	277, 331, 847
AcsI	RAATTY	3 cut(s)	842, 1810, 2094
AcyI	GRCGYC	1 cut(s)	101
AdeI	CACNNNGTG	1 cut(s)	340
AfaI	GTAC	8 cut(s)	194, 881, 1352, 1439, 1484, 1490, 1551, 1574
AfiI	CCNNNNNNNGG	4 cut(s)	700, 824, 1185, 1582
AflIII	ACRYGT	1 cut(s)	1479
AgeI	ACCGGT	1 cut(s)	671
AgsI	TTSAA	9 cut(s)	248, 754, 896, 1183, 1276, 1327, 1619, 1792, 1816
AjiI	CACGTC	2 cut(s)	337, 760
AjnI	CCWGG	2 cut(s)	328, 699
AleI	CACNNNNGTG	1 cut(s)	473
AluBI	AGCT	9 cut(s)	275, 307, 482, 489, 529, 899, 1042, 1444, 2021
AluI	AGCT	9 cut(s)	275, 307, 482, 489, 529, 899, 1042, 1444, 2021
Alw21I	GWGCWC	2 cut(s)	1044, 1932
Alw26I	GTCTC	1 cut(s)	243
AlwI	GGATC	5 cut(s)	220, 691, 720, 1082, 1562
AlwNI	CAGNNNCTG	1 cut(s)	700
Ama87I	CYCGRG	3 cut(s)	1102, 1161, 1931
Aor13HI	TCCGGA	1 cut(s)	2098
AoxI	GGCC	5 cut(s)	277, 331, 523, 847, 1176
ApeKI	GCWGC	6 cut(s)	418, 479, 486, 610, 1430, 2074
ApoI	RAATTY	3 cut(s)	842, 1810, 2094
AseI	ATTAAT	1 cut(s)	95
AsiGI	ACCGGT	1 cut(s)	671
Asp700I	GAANNNNTTC	1 cut(s)	2112
Asp718I	GGTACC	1 cut(s)	192
AspS9I	GGNCC	1 cut(s)	1501
AsuC2I	CCSGG	4 cut(s)	197, 1103, 1104, 1522
AsuHPI	GGTGA	5 cut(s)	164, 374, 683, 923, 1177
AsuII	TTCGAA	3 cut(s)	1139, 1448, 2092
AvaI	CYCGRG	3 cut(s)	1102, 1161, 1931
AvaII	GGWCC	1 cut(s)	1501
BaeI	ACNNNNGTAYC	2 cut(s)	863, 896
BalI	TGGCCA	2 cut(s)	279, 333
BanI	GGYRCC	2 cut(s)	192, 1603
BanII	GRGCYC	2 cut(s)	1044, 1192
BarI	GAAGNNNNNNTAC	2 cut(s)	1120, 1152
BauI	CACGAG	1 cut(s)	1577
BbsI	GAAGAC	3 cut(s)	1128, 1368, 2034
Bbv12I	GWGCWC	2 cut(s)	1044, 1932
BbvCI	CCTCAGC	1 cut(s)	1835
BbvI	GCAGC	6 cut(s)	430, 491, 498, 597, 1417, 2086
BceAI	ACGGC	1 cut(s)	834
BciT130I	CCWGG	2 cut(s)	330, 701
BclI	TGATCA	1 cut(s)	19
BcnI	CCSGG	4 cut(s)	197, 1103, 1104, 1522
BcoDI	GTCTC	1 cut(s)	243
BfaI	CTAG	5 cut(s)	272, 1037, 1209, 1262, 1283
BglII	AGATCT	1 cut(s)	1821
BisI	GCNGC	8 cut(s)	419, 480, 487, 611, 1230, 1431, 1594, 2075
BlsI	GCNGC	8 cut(s)	420, 481, 488, 612, 1231, 1432, 1595, 2076
BmcAI	AGTACT	1 cut(s)	1352
Bme1390I	CCNGG	6 cut(s)	197, 330, 701, 1103, 1104, 1522
Bme18I	GGWCC	1 cut(s)	1501
BmeT110I	CYCGRG	3 cut(s)	1102, 1161, 1931
BmgBI	CACGTC	2 cut(s)	337, 760
BmgT120I	GGNCC	1 cut(s)	1501
BmiI	GGNNCC	2 cut(s)	194, 1605
BmrFI	CCNGG	6 cut(s)	197, 330, 701, 1103, 1104, 1522
BmrI	ACTGGG	1 cut(s)	1837
BmsI	GCATC	3 cut(s)	380, 918, 1216
BmuI	ACTGGG	1 cut(s)	1837
BoxI	GACNNNNGTC	1 cut(s)	117
BpiI	GAAGAC	3 cut(s)	1128, 1368, 2034
BplI	GAGNNNNNCTC	2 cut(s)	557, 589
Bpu10I	CCTNAGC	2 cut(s)	1835, 2022
Bpu14I	TTCGAA	3 cut(s)	1139, 1448, 2092
BpuEI	CTTGAG	5 cut(s)	136, 958, 1028, 1367, 1481
BpuMI	CCSGG	4 cut(s)	197, 1103, 1104, 1522
Bsa29I	ATCGAT	1 cut(s)	2137
BsaHI	GRCGYC	1 cut(s)	101
BsaJI	CCNNGG	6 cut(s)	280, 462, 796, 818, 850, 1102
BsaWI	WCCGGW	3 cut(s)	671, 725, 2098
Bsc4I	CCNNNNNNNGG	4 cut(s)	700, 824, 1185, 1582
Bse118I	RCCGGY	1 cut(s)	671
Bse1I	ACTGG	2 cut(s)	1331, 1832
Bse3DI	GCAATG	4 cut(s)	296, 385, 401, 1522
BseAI	TCCGGA	1 cut(s)	2098
BseBI	CCWGG	2 cut(s)	330, 701
BseCI	ATCGAT	1 cut(s)	2137
BseDI	CCNNGG	6 cut(s)	280, 462, 796, 818, 850, 1102
BseGI	GGATG	5 cut(s)	783, 909, 944, 1231, 1639
BseLI	CCNNNNNNNGG	4 cut(s)	700, 824, 1185, 1582
BseMI	GCAATG	4 cut(s)	296, 385, 401, 1522
BseMII	CTCAG	2 cut(s)	1205, 1826
BseNI	ACTGG	2 cut(s)	1331, 1832
BseXI	GCAGC	6 cut(s)	430, 491, 498, 597, 1417, 2086
BseYI	CCCAGC	1 cut(s)	411
BsgI	GTGCAG	1 cut(s)	1639
Bsh1236I	CGCG	1 cut(s)	1051
BshFI	GGCC	5 cut(s)	279, 333, 525, 849, 1178
BshNI	GGYRCC	2 cut(s)	192, 1603
BshTI	ACCGGT	1 cut(s)	671
BshVI	ATCGAT	1 cut(s)	2137
BsiHKAI	GWGCWC	2 cut(s)	1044, 1932
BsiHKCI	CYCGRG	3 cut(s)	1102, 1161, 1931
BsiSI	CCGG	6 cut(s)	197, 672, 726, 1103, 1521, 2099
BslFI	GGGAC	4 cut(s)	88, 1409, 1897, 1995
BslI	CCNNNNNNNGG	4 cut(s)	700, 824, 1185, 1582
BsmAI	GTCTC	1 cut(s)	243
BsmFI	GGGAC	4 cut(s)	88, 1409, 1897, 1995
BsmI	GAATGC	1 cut(s)	1113
BsnI	GGCC	5 cut(s)	279, 333, 525, 849, 1178
BsoBI	CYCGRG	3 cut(s)	1102, 1161, 1931
Bsp119I	TTCGAA	3 cut(s)	1139, 1448, 2092
Bsp1286I	GDGCHC	3 cut(s)	1044, 1192, 1932
Bsp13I	TCCGGA	1 cut(s)	2098
Bsp1407I	TGTACA	1 cut(s)	1482
Bsp143I	GATC	8 cut(s)	19, 212, 696, 712, 1066, 1087, 1554, 1821
Bsp19I	CCATGG	2 cut(s)	280, 818
BspACI	CCGC	3 cut(s)	1051, 1230, 1593
BspANI	GGCC	5 cut(s)	279, 333, 525, 849, 1178
BspCNI	CTCAG	2 cut(s)	1204, 1827
BspDI	ATCGAT	1 cut(s)	2137
BspEI	TCCGGA	1 cut(s)	2098
BspFNI	CGCG	1 cut(s)	1051
BspLI	GGNNCC	2 cut(s)	194, 1605
BspPI	GGATC	5 cut(s)	220, 691, 720, 1082, 1562
BspT104I	TTCGAA	3 cut(s)	1139, 1448, 2092
BspT107I	GGYRCC	2 cut(s)	192, 1603
BsrDI	GCAATG	4 cut(s)	296, 385, 401, 1522
BsrFI	RCCGGY	1 cut(s)	671
BsrGI	TGTACA	1 cut(s)	1482
BsrI	ACTGG	2 cut(s)	1331, 1832
BssAI	RCCGGY	1 cut(s)	671
BssECI	CCNNGG	6 cut(s)	280, 462, 796, 818, 850, 1102
BssMI	GATC	8 cut(s)	19, 212, 696, 712, 1066, 1087, 1554, 1821
BssNI	GRCGYC	1 cut(s)	101
BssSI	CACGAG	1 cut(s)	1577
BssT1I	CCWWGG	2 cut(s)	280, 818
Bst2BI	CACGAG	1 cut(s)	1577
Bst2UI	CCWGG	2 cut(s)	330, 701
Bst4CI	ACNGT	4 cut(s)	635, 1400, 1415, 2009
Bst6I	CTCTTC	3 cut(s)	134, 140, 1178
BstACI	GRCGYC	1 cut(s)	101
BstAPI	GCANNNNNTGC	2 cut(s)	291, 396
BstAUI	TGTACA	1 cut(s)	1482
BstBI	TTCGAA	3 cut(s)	1139, 1448, 2092
BstC8I	GCNNGC	8 cut(s)	277, 287, 392, 484, 527, 735, 815, 923
BstDEI	CTNAG	4 cut(s)	1191, 1357, 1835, 2022
BstDSI	CCRYGG	4 cut(s)	280, 796, 818, 850
BstEII	GGTNACC	2 cut(s)	266, 689
BstENI	CCTNNNNNAGG	2 cut(s)	1183, 1580
BstF5I	GGATG	5 cut(s)	783, 909, 944, 1231, 1639
BstFNI	CGCG	1 cut(s)	1051
BstKTI	GATC	8 cut(s)	22, 215, 699, 715, 1069, 1090, 1557, 1824
BstMAI	GTCTC	1 cut(s)	243
BstMBI	GATC	8 cut(s)	19, 212, 696, 712, 1066, 1087, 1554, 1821
BstMWI	GCNNNNNNNGC	9 cut(s)	291, 396, 495, 504, 896, 1048, 1235, 1430, 2080
BstNI	CCWGG	2 cut(s)	330, 701
BstNSI	RCATGY	4 cut(s)	53, 260, 289, 1483
BstPAI	GACNNNNGTC	1 cut(s)	117
BstPI	GGTNACC	2 cut(s)	266, 689
BstSCI	CCNGG	6 cut(s)	195, 328, 699, 1101, 1102, 1520
BstUI	CGCG	1 cut(s)	1051
BstV1I	GCAGC	6 cut(s)	430, 491, 498, 597, 1417, 2086
BstV2I	GAAGAC	3 cut(s)	1128, 1368, 2034
BstX2I	RGATCY	2 cut(s)	696, 1821
BstXI	CCANNNNNNTGG	2 cut(s)	329, 407
BstYI	RGATCY	2 cut(s)	696, 1821
Bsu15I	ATCGAT	1 cut(s)	2137
BsuRI	GGCC	5 cut(s)	279, 333, 525, 849, 1178
BsuTUI	ATCGAT	1 cut(s)	2137
BtgI	CCRYGG	4 cut(s)	280, 796, 818, 850
BtgZI	GCGATG	2 cut(s)	302, 357
BtrI	CACGTC	2 cut(s)	337, 760
BtsCI	GGATG	5 cut(s)	783, 909, 944, 1231, 1639
BtsIMutI	CAGTG	1 cut(s)	1338
Cac8I	GCNNGC	8 cut(s)	277, 287, 392, 484, 527, 735, 815, 923
CaiI	CAGNNNCTG	1 cut(s)	700
Cfr10I	RCCGGY	1 cut(s)	671
Cfr13I	GGNCC	1 cut(s)	1501
Cfr9I	CCCGGG	1 cut(s)	1102
ClaI	ATCGAT	1 cut(s)	2137
CseI	GACGC	1 cut(s)	90
Csp6I	GTAC	8 cut(s)	193, 880, 1351, 1438, 1483, 1489, 1550, 1573
CspAI	ACCGGT	1 cut(s)	671
CviQI	GTAC	8 cut(s)	193, 880, 1351, 1438, 1483, 1489, 1550, 1573
DdeI	CTNAG	4 cut(s)	1191, 1357, 1835, 2022
DpnI	GATC	8 cut(s)	21, 214, 698, 714, 1068, 1089, 1556, 1823
DpnII	GATC	8 cut(s)	19, 212, 696, 712, 1066, 1087, 1554, 1821
DraIII	CACNNNGTG	1 cut(s)	340
EaeI	YGGCCR	3 cut(s)	277, 331, 847
Eam1104I	CTCTTC	3 cut(s)	134, 140, 1178
EarI	CTCTTC	3 cut(s)	134, 140, 1178
Ecl136II	GAGCTC	1 cut(s)	1042
Eco130I	CCWWGG	2 cut(s)	280, 818
Eco147I	AGGCCT	1 cut(s)	1178
Eco24I	GRGCYC	2 cut(s)	1044, 1192
Eco47I	GGWCC	1 cut(s)	1501
Eco53kI	GAGCTC	1 cut(s)	1042
Eco88I	CYCGRG	3 cut(s)	1102, 1161, 1931
Eco91I	GGTNACC	2 cut(s)	266, 689
EcoICRI	GAGCTC	1 cut(s)	1042
EcoNI	CCTNNNNNAGG	2 cut(s)	1183, 1580
EcoO65I	GGTNACC	2 cut(s)	266, 689
EcoRI	GAATTC	1 cut(s)	2094
EcoRII	CCWGG	2 cut(s)	328, 699
EcoT14I	CCWWGG	2 cut(s)	280, 818
EcoT38I	GRGCYC	2 cut(s)	1044, 1192
ErhI	CCWWGG	2 cut(s)	280, 818
FaqI	GGGAC	4 cut(s)	88, 1409, 1897, 1995
FauNDI	CATATG	2 cut(s)	423, 606
FbaI	TGATCA	1 cut(s)	19
Fnu4HI	GCNGC	8 cut(s)	419, 480, 487, 611, 1230, 1431, 1594, 2075
FokI	GGATG	5 cut(s)	790, 896, 931, 1238, 1646
FriOI	GRGCYC	2 cut(s)	1044, 1192
Fsp4HI	GCNGC	8 cut(s)	419, 480, 487, 611, 1230, 1431, 1594, 2075
FspBI	CTAG	5 cut(s)	272, 1037, 1209, 1262, 1283
GluI	GCNGC	8 cut(s)	419, 480, 487, 611, 1230, 1431, 1594, 2075
GsaI	CCCAGC	1 cut(s)	415
HaeIII	GGCC	5 cut(s)	279, 333, 525, 849, 1178
HapII	CCGG	6 cut(s)	197, 672, 726, 1103, 1521, 2099
HgaI	GACGC	1 cut(s)	90
Hin1I	GRCGYC	1 cut(s)	101
HindIII	AAGCTT	1 cut(s)	1442
HinfI	GANTC	5 cut(s)	118, 1159, 1327, 1640, 1853
HpaII	CCGG	6 cut(s)	197, 672, 726, 1103, 1521, 2099
HphI	GGTGA	5 cut(s)	164, 374, 683, 923, 1177
Hpy166II	GTNNAC	2 cut(s)	1852, 2005
Hpy188I	TCNGA	5 cut(s)	466, 517, 994, 1419, 1869
Hpy188III	TCNNGA	7 cut(s)	82, 172, 1209, 1346, 1394, 1579, 2099
Hpy8I	GTNNAC	2 cut(s)	1852, 2005
Hpy99I	CGWCG	4 cut(s)	341, 761, 1320, 1697
HpyAV	CCTTC	7 cut(s)	468, 1414, 1420, 1459, 1576, 1873, 2175
HpyCH4III	ACNGT	4 cut(s)	635, 1400, 1415, 2009
HpyCH4IV	ACGT	5 cut(s)	336, 405, 759, 1322, 1760
HpyF10VI	GCNNNNNNNGC	9 cut(s)	291, 396, 495, 504, 896, 1048, 1235, 1430, 2080
HpyF3I	CTNAG	4 cut(s)	1191, 1357, 1835, 2022
HpySE526I	ACGT	5 cut(s)	336, 405, 759, 1322, 1760
Hsp92I	GRCGYC	1 cut(s)	101
Kpn2I	TCCGGA	1 cut(s)	2098
KpnI	GGTACC	1 cut(s)	196
Ksp22I	TGATCA	1 cut(s)	19
Kzo9I	GATC	8 cut(s)	19, 212, 696, 712, 1066, 1087, 1554, 1821
LmnI	GCTCC	4 cut(s)	312, 331, 1985, 2018
Lsp1109I	GCAGC	6 cut(s)	430, 491, 498, 597, 1417, 2086
LweI	GCATC	3 cut(s)	380, 918, 1216
MaeI	CTAG	5 cut(s)	272, 1037, 1209, 1262, 1283
MaeII	ACGT	5 cut(s)	336, 405, 759, 1322, 1760
MalI	GATC	8 cut(s)	21, 214, 698, 714, 1068, 1089, 1556, 1823
MboI	GATC	8 cut(s)	19, 212, 696, 712, 1066, 1087, 1554, 1821
MfeI	CAATTG	1 cut(s)	1857
MflI	RGATCY	2 cut(s)	696, 1821
MhlI	GDGCHC	3 cut(s)	1044, 1192, 1932
MlsI	TGGCCA	2 cut(s)	279, 333
MluNI	TGGCCA	2 cut(s)	279, 333
MlyI	GAGTC	3 cut(s)	127, 1153, 1847
MmeI	TCCRAC	2 cut(s)	972, 1017
Mox20I	TGGCCA	2 cut(s)	279, 333
MroI	TCCGGA	1 cut(s)	2098
MroXI	GAANNNNTTC	1 cut(s)	2112
MscI	TGGCCA	2 cut(s)	279, 333
MseI	TTAA	9 cut(s)	5, 87, 95, 125, 234, 1460, 1625, 1763, 1992
MslI	CAYNNNNRTG	3 cut(s)	95, 321, 473
Msp20I	TGGCCA	2 cut(s)	279, 333
MspA1I	CMGCKG	1 cut(s)	489
MspI	CCGG	6 cut(s)	197, 672, 726, 1103, 1521, 2099
MspR9I	CCNGG	6 cut(s)	197, 330, 701, 1103, 1104, 1522
MunI	CAATTG	1 cut(s)	1857
Mva1269I	GAATGC	1 cut(s)	1113
MvaI	CCWGG	2 cut(s)	330, 701
MvnI	CGCG	1 cut(s)	1051
MwoI	GCNNNNNNNGC	9 cut(s)	291, 396, 495, 504, 896, 1048, 1235, 1430, 2080
NciI	CCSGG	4 cut(s)	197, 1103, 1104, 1522
NcoI	CCATGG	2 cut(s)	280, 818
NdeI	CATATG	2 cut(s)	423, 606
NdeII	GATC	8 cut(s)	19, 212, 696, 712, 1066, 1087, 1554, 1821
NlaIV	GGNNCC	2 cut(s)	194, 1605
NmeAIII	GCCGAG	1 cut(s)	918
NmuCI	GTSAC	7 cut(s)	689, 865, 1006, 1278, 1333, 1756, 2054
NspI	RCATGY	4 cut(s)	53, 260, 289, 1483
NspV	TTCGAA	3 cut(s)	1139, 1448, 2092
OliI	CACNNNNGTG	1 cut(s)	473
PaeI	GCATGC	1 cut(s)	289
PaeR7I	CTCGAG	1 cut(s)	1931
PceI	AGGCCT	1 cut(s)	1178
PciI	ACATGT	1 cut(s)	1479
PcsI	WCGNNNNNNNCGW	1 cut(s)	1538
PctI	GAATGC	1 cut(s)	1113
PdmI	GAANNNNTTC	1 cut(s)	2112
PfeI	GAWTC	2 cut(s)	1327, 1640
PflMI	CCANNNNNTGG	2 cut(s)	700, 824
PfoI	TCCNGGA	1 cut(s)	699
PinAI	ACCGGT	1 cut(s)	671
PkrI	GCNGC	8 cut(s)	420, 481, 488, 612, 1231, 1432, 1595, 2076
PleI	GAGTC	3 cut(s)	126, 1153, 1847
PpsI	GAGTC	3 cut(s)	126, 1153, 1847
PscI	ACATGT	1 cut(s)	1479
PshAI	GACNNNNGTC	1 cut(s)	117
PshBI	ATTAAT	1 cut(s)	95
Psp124BI	GAGCTC	1 cut(s)	1044
Psp6I	CCWGG	2 cut(s)	328, 699
PspEI	GGTNACC	2 cut(s)	266, 689
PspFI	CCCAGC	1 cut(s)	411
PspGI	CCWGG	2 cut(s)	328, 699
PspN4I	GGNNCC	2 cut(s)	194, 1605
PspPI	GGNCC	1 cut(s)	1501
PspXI	VCTCGAGB	1 cut(s)	1931
PstNI	CAGNNNCTG	1 cut(s)	700
PsuI	RGATCY	2 cut(s)	696, 1821
PvuII	CAGCTG	1 cut(s)	489
RsaI	GTAC	8 cut(s)	194, 881, 1352, 1439, 1484, 1490, 1551, 1574
RsaNI	GTAC	8 cut(s)	193, 880, 1351, 1438, 1483, 1489, 1550, 1573
RseI	CAYNNNNRTG	3 cut(s)	95, 321, 473
SacI	GAGCTC	1 cut(s)	1044
SaqAI	TTAA	9 cut(s)	5, 87, 95, 125, 234, 1460, 1625, 1763, 1992
SatI	GCNGC	8 cut(s)	419, 480, 487, 611, 1230, 1431, 1594, 2075
Sau3AI	GATC	8 cut(s)	19, 212, 696, 712, 1066, 1087, 1554, 1821
Sau96I	GGNCC	1 cut(s)	1501
ScaI	AGTACT	1 cut(s)	1352
SchI	GAGTC	3 cut(s)	127, 1153, 1847
ScrFI	CCNGG	6 cut(s)	197, 330, 701, 1103, 1104, 1522
SduI	GDGCHC	3 cut(s)	1044, 1192, 1932
SfaNI	GCATC	3 cut(s)	380, 918, 1216
Sfr274I	CTCGAG	1 cut(s)	1931
SfuI	TTCGAA	3 cut(s)	1139, 1448, 2092
SinI	GGWCC	1 cut(s)	1501
SlaI	CTCGAG	1 cut(s)	1931
SmaI	CCCGGG	1 cut(s)	1104
SmiMI	CAYNNNNRTG	3 cut(s)	95, 321, 473
SmlI	CTYRAG	6 cut(s)	115, 973, 1043, 1346, 1496, 1931
SmoI	CTYRAG	6 cut(s)	115, 973, 1043, 1346, 1496, 1931
SphI	GCATGC	1 cut(s)	289
SseBI	AGGCCT	1 cut(s)	1178
SsiI	CCGC	3 cut(s)	1051, 1230, 1593
SspI	AATATT	2 cut(s)	1622, 1737
SspMI	CTAG	5 cut(s)	272, 1037, 1209, 1262, 1283
SstI	GAGCTC	1 cut(s)	1044
StuI	AGGCCT	1 cut(s)	1178
StyD4I	CCNGG	6 cut(s)	195, 328, 699, 1101, 1102, 1520
StyI	CCWWGG	2 cut(s)	280, 818
TaaI	ACNGT	4 cut(s)	635, 1400, 1415, 2009
TaiI	ACGT	5 cut(s)	339, 408, 762, 1325, 1763
TaqI	TCGA	8 cut(s)	354, 366, 575, 1139, 1448, 1932, 2092, 2137
TatI	WGTACW	3 cut(s)	1350, 1482, 1488
TauI	GCSGC	2 cut(s)	1232, 1596
TfiI	GAWTC	2 cut(s)	1327, 1640
Tru1I	TTAA	9 cut(s)	5, 87, 95, 125, 234, 1460, 1625, 1763, 1992
Tru9I	TTAA	9 cut(s)	5, 87, 95, 125, 234, 1460, 1625, 1763, 1992
TscAI	CASTG	1 cut(s)	1338
TseFI	GTSAC	7 cut(s)	689, 865, 1006, 1278, 1333, 1756, 2054
TseI	GCWGC	6 cut(s)	418, 479, 486, 610, 1430, 2074
Tsp45I	GTSAC	7 cut(s)	689, 865, 1006, 1278, 1333, 1756, 2054
TspDTI	ATGAA	8 cut(s)	30, 305, 593, 969, 1021, 1478, 1625, 1992
TspGWI	ACGGA	2 cut(s)	813, 1567
TspMI	CCCGGG	1 cut(s)	1102
TspRI	CASTG	1 cut(s)	1338
Van91I	CCANNNNNTGG	2 cut(s)	700, 824
VpaK11BI	GGWCC	1 cut(s)	1501
VspI	ATTAAT	1 cut(s)	95
XagI	CCTNNNNNAGG	2 cut(s)	1183, 1580
XapI	RAATTY	3 cut(s)	842, 1810, 2094
XbaI	TCTAGA	1 cut(s)	1208
XceI	RCATGY	4 cut(s)	53, 260, 289, 1483
XhoI	CTCGAG	1 cut(s)	1931
XmaI	CCCGGG	1 cut(s)	1102
XmnI	GAANNNNTTC	1 cut(s)	2112
XspI	CTAG	5 cut(s)	272, 1037, 1209, 1262, 1283
ZrmI	AGTACT	1 cut(s)	1352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.