Rh4AG422100

Protein SHOOT GRAVITROPISM

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Forward (+)
71885171 .. 71888191
3021 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG422100.1

Sequence Viewer

Length: 1152 bp
ATGCACAGAAGAAGGCACAAGGTGCCGTGGAAGTTGCTGAAGCGGGAAATACAGGATCAGGTGAAGAAGAGGGTGTTTGTGTGCCCGGAGCCGAGCTGCCTCCACCACGACCCTTGCCATGCGCTCGGCGATCTAGTGGGAATCAAGAAGCACTTCCGGCGAAAGCACAGCAACCACAAGCAATGGGTGTGCGACAAGTGCTCCAAAGGTTACGCCGTACAATCCGATTACAAGGCCCATCTCAAAACCTGTGGCACCAGAGGACATTCCTGCGACTGTGGCCGTGTGTTTTCCAGAGTGGAGAGTTTCATTGAGCACCAAGATACTTGCAGCGCGCGACATGTTGTCCGGCCAGAATTGCAGGCACTTCAGCCGGCGGCGGCCTGCTCATCACGAACAGCGTCGAGCACCAGCCCCTCCAGCGATGGCCATTTCAGCATTAATAATAACAACAATGCAGCTCCTCCATTGCCCGGATTACCAGTAATGCCAAAGCCAAATGACCAACCTGTTGTGTTTATAAGCTCTCATGAGGGGCATGATGGTAATCCTTCCACTTCTAACCACCAACACCAACAGCCACGAGAACAAGTGCTGGAGCTTAAACTCCTTCCATCGTCGGACACACAAACCTCCCCTCGAAACGAAGACGAAAACTATGCAACGCATTTGAAGCTTTCCATAGGCGGCTCATCACGCGGTGGTGATCAAAAGAATGATTCGCCACGAAGCTCATCAAGAGAAATGAACACAAACATTGGTTTTGGTGGTAGAGCAAGTCGGGAAGTGGCGAGGCTGAAAGACTTTGCCTCCGAGGAGTTGAAGTTGGCCATGGCGGAAAAGGCCTACGCCGAAGACGCCAGAAGAGAAGCCAAGCGGCAAATAGAGATGGCCGAGCTGGAGTTCGCAAACGCAAAGAGGATCAGGCAACAAGCGCAGGCGGAGCTTCAAAAGGCTCAGCTACTAAAAGAGCAATCCACCAAGAAAATCAGCTCCGCCATTATGCAAATCACTTGTCCATCGTGCAAGCAACACTTCCATGCGAGTAATCCTAGTAACGCAGTCGGAGTGGGACCCTCCGTCGACGAGACGACCTCCCTCGGCATGAGTTACATGTCCTCCGCCACAACCGAAGGAGAAGGAGAACAATGA

Protein Analysis

383

Amino Acids

42.47

Weight (kDa)

9.01

Isoelectric Point (pI)

69.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2H2-2nd_BIRD-IDD PF22996 22 - 56 3.5e-18 BIRD-IDD transcription factor, second C2H2 zinc finger
C2CH-3rd_BIRD-IDD PF22995 61 - 85 3.1e-14 BIRD-IDD transcription factor, third C2HC zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 521
AccB1I GGYRCC 2 cut(s) 22, 254
AccI GTMKAC 1 cut(s) 1083
AccII CGCG 3 cut(s) 335, 337, 699
AclWI GGATC 2 cut(s) 63, 929
AcoI YGGCCR 5 cut(s) 280, 350, 427, 828, 891
AcuI CTGAAG 2 cut(s) 59, 353
AcyI GRCGYC 1 cut(s) 858
AdeI CACNNNGTG 2 cut(s) 22, 701
AfaI GTAC 1 cut(s) 219
AfiI CCNNNNNNNGG 1 cut(s) 473
AflIII ACRYGT 2 cut(s) 340, 1113
AgsI TTSAA 3 cut(s) 673, 823, 950
AhdI GACNNNNNGTC 2 cut(s) 344, 1079
Alw21I GWGCWC 3 cut(s) 203, 318, 410
Alw26I GTCTC 1 cut(s) 1082
AlwI GGATC 2 cut(s) 63, 929
AoxI GGCC 8 cut(s) 234, 280, 350, 381, 427, 828, 843, 891
ApeKI GCWGC 3 cut(s) 96, 330, 458
ArsI GACNNNNNNTTYG 2 cut(s) 1000, 1032
AseI ATTAAT 1 cut(s) 441
Asp700I GAANNNNTTC 1 cut(s) 152
AspLEI GCGC 4 cut(s) 124, 335, 337, 937
AspS9I GGNCC 2 cut(s) 235, 1073
AsuC2I CCSGG 2 cut(s) 86, 474
AsuHPI GGTGA 2 cut(s) 73, 716
AvaII GGWCC 1 cut(s) 1073
BaeGI GKGCMC 1 cut(s) 86
BalI TGGCCA 2 cut(s) 429, 830
BanI GGYRCC 2 cut(s) 22, 254
BauI CACGAG 1 cut(s) 582
BbsI GAAGAC 2 cut(s) 654, 861
Bbv12I GWGCWC 3 cut(s) 203, 318, 410
BbvI GCAGC 3 cut(s) 83, 342, 470
BccI CCATC 6 cut(s) 246, 419, 536, 622, 883, 1027
BceAI ACGGC 3 cut(s) 10, 200, 267
BcgI CGANNNNNNTGC 2 cut(s) 641, 675
BclI TGATCA 1 cut(s) 706
BcnI CCSGG 2 cut(s) 86, 474
BcoDI GTCTC 1 cut(s) 1082
BfaI CTAG 2 cut(s) 134, 1053
BisI GCNGC 7 cut(s) 97, 331, 378, 381, 459, 688, 878
BlpI GCTNAGC 1 cut(s) 957
BlsI GCNGC 7 cut(s) 98, 332, 379, 382, 460, 689, 879
Bme1390I CCNGG 2 cut(s) 86, 474
Bme18I GGWCC 1 cut(s) 1073
BmeRI GACNNNNNGTC 2 cut(s) 344, 1079
BmgT120I GGNCC 2 cut(s) 235, 1073
BmiI GGNNCC 5 cut(s) 24, 90, 256, 1074, 1075
BmrFI CCNGG 2 cut(s) 86, 474
BpiI GAAGAC 2 cut(s) 654, 861
BplI GAGNNNNNCTC 2 cut(s) 1079, 1111
BpmI CTGGAG 3 cut(s) 403, 617, 920
Bpu1102I GCTNAGC 1 cut(s) 957
BpuMI CCSGG 2 cut(s) 86, 474
BsaBI GATNNNNATC 1 cut(s) 546
BsaHI GRCGYC 1 cut(s) 858
BsaJI CCNNGG 4 cut(s) 26, 813, 831, 1099
BsaXI ACNNNNNCTCC 8 cut(s) 185, 215, 794, 809, 824, 839, 1103, 1133
Bsc4I CCNNNNNNNGG 1 cut(s) 473
Bse118I RCCGGY 1 cut(s) 373
Bse1I ACTGG 1 cut(s) 482
Bse3DI GCAATG 2 cut(s) 188, 467
Bse8I GATNNNNATC 1 cut(s) 546
BseDI CCNNGG 4 cut(s) 26, 813, 831, 1099
BseJI GATNNNNATC 1 cut(s) 546
BseLI CCNNNNNNNGG 1 cut(s) 473
BseMI GCAATG 2 cut(s) 188, 467
BseMII CTCAG 1 cut(s) 971
BseNI ACTGG 1 cut(s) 482
BsePI GCGCGC 1 cut(s) 333
BseRI GAGGAG 2 cut(s) 453, 830
BseSI GKGCMC 1 cut(s) 86
BseXI GCAGC 3 cut(s) 83, 342, 470
Bsh1236I CGCG 3 cut(s) 335, 337, 699
BshFI GGCC 8 cut(s) 236, 282, 352, 383, 429, 830, 845, 893
BshNI GGYRCC 2 cut(s) 22, 254
BsiHKAI GWGCWC 3 cut(s) 203, 318, 410
BsiSI CCGG 5 cut(s) 86, 157, 349, 374, 474
BslFI GGGAC 1 cut(s) 1086
BslI CCNNNNNNNGG 1 cut(s) 473
BsmAI GTCTC 1 cut(s) 1082
BsmBI CGTCTC 1 cut(s) 1082
BsmFI GGGAC 1 cut(s) 1086
BsnI GGCC 8 cut(s) 236, 282, 352, 383, 429, 830, 845, 893
Bsp1286I GDGCHC 4 cut(s) 86, 203, 318, 410
Bsp143I GATC 4 cut(s) 55, 130, 706, 921
Bsp1720I GCTNAGC 1 cut(s) 957
Bsp19I CCATGG 1 cut(s) 831
BspANI GGCC 8 cut(s) 236, 282, 352, 383, 429, 830, 845, 893
BspCNI CTCAG 1 cut(s) 970
BspFNI CGCG 3 cut(s) 335, 337, 699
BspHI TCATGA 1 cut(s) 529
BspLI GGNNCC 5 cut(s) 24, 90, 256, 1074, 1075
BspPI GGATC 2 cut(s) 63, 929
BspT107I GGYRCC 2 cut(s) 22, 254
BsrDI GCAATG 2 cut(s) 188, 467
BsrFI RCCGGY 1 cut(s) 373
BsrI ACTGG 1 cut(s) 482
BssAI RCCGGY 1 cut(s) 373
BssECI CCNNGG 4 cut(s) 26, 813, 831, 1099
BssHII GCGCGC 1 cut(s) 333
BssMI GATC 4 cut(s) 55, 130, 706, 921
BssNI GRCGYC 1 cut(s) 858
BssSI CACGAG 1 cut(s) 582
BssT1I CCWWGG 1 cut(s) 831
Bst2BI CACGAG 1 cut(s) 582
Bst4CI ACNGT 1 cut(s) 278
Bst6I CTCTTC 2 cut(s) 62, 859
BstACI GRCGYC 1 cut(s) 858
BstAPI GCANNNNNTGC 1 cut(s) 22
BstC8I GCNNGC 6 cut(s) 335, 363, 375, 385, 939, 1028
BstDEI CTNAG 1 cut(s) 957
BstDSI CCRYGG 2 cut(s) 26, 831
BstFNI CGCG 3 cut(s) 335, 337, 699
BstHHI GCGC 4 cut(s) 124, 335, 337, 937
BstKTI GATC 4 cut(s) 58, 133, 709, 924
BstMAI GTCTC 1 cut(s) 1082
BstMBI GATC 4 cut(s) 55, 130, 706, 921
BstNSI RCATGY 2 cut(s) 344, 1117
BstSCI CCNGG 2 cut(s) 84, 472
BstSLI GKGCMC 1 cut(s) 86
BstUI CGCG 3 cut(s) 335, 337, 699
BstV1I GCAGC 3 cut(s) 83, 342, 470
BstV2I GAAGAC 2 cut(s) 654, 861
BsuRI GGCC 8 cut(s) 236, 282, 352, 383, 429, 830, 845, 893
BtgI CCRYGG 2 cut(s) 26, 831
BtgZI GCGATG 1 cut(s) 438
Cac8I GCNNGC 6 cut(s) 335, 363, 375, 385, 939, 1028
CciI TCATGA 1 cut(s) 529
CfoI GCGC 4 cut(s) 124, 335, 337, 937
Cfr10I RCCGGY 1 cut(s) 373
Cfr13I GGNCC 2 cut(s) 235, 1073
CseI GACGC 2 cut(s) 390, 866
Csp6I GTAC 1 cut(s) 218
CspCI CAANNNNNGTGG 4 cut(s) 95, 130, 232, 267
CviAII CATG 8 cut(s) 119, 341, 530, 539, 832, 1040, 1105, 1114
CviQI GTAC 1 cut(s) 218
DdeI CTNAG 1 cut(s) 957
DpnI GATC 4 cut(s) 57, 132, 708, 923
DpnII GATC 4 cut(s) 55, 130, 706, 921
DraIII CACNNNGTG 2 cut(s) 22, 701
DriI GACNNNNNGTC 2 cut(s) 344, 1079
EaeI YGGCCR 5 cut(s) 280, 350, 427, 828, 891
Eam1104I CTCTTC 2 cut(s) 62, 859
Eam1105I GACNNNNNGTC 2 cut(s) 344, 1079
EarI CTCTTC 2 cut(s) 62, 859
EciI GGCGGA 4 cut(s) 851, 956, 985, 1111
Eco130I CCWWGG 1 cut(s) 831
Eco147I AGGCCT 1 cut(s) 845
Eco47I GGWCC 1 cut(s) 1073
Eco57I CTGAAG 2 cut(s) 59, 353
EcoO109I RGGNCCY 1 cut(s) 1073
EcoT14I CCWWGG 1 cut(s) 831
ErhI CCWWGG 1 cut(s) 831
Esp3I CGTCTC 1 cut(s) 1082
FaeI CATG 8 cut(s) 122, 344, 533, 542, 835, 1043, 1108, 1117
FalI AAGNNNNNCTT 4 cut(s) 137, 169, 1019, 1051
FaqI GGGAC 1 cut(s) 1086
FatI CATG 8 cut(s) 118, 340, 529, 538, 831, 1039, 1104, 1113
FauI CCCGC 1 cut(s) 36
FbaI TGATCA 1 cut(s) 706
FblI GTMKAC 1 cut(s) 1083
Fnu4HI GCNGC 7 cut(s) 97, 331, 378, 381, 459, 688, 878
Fsp4HI GCNGC 7 cut(s) 97, 331, 378, 381, 459, 688, 878
FspBI CTAG 2 cut(s) 134, 1053
GlaI GCGC 4 cut(s) 123, 334, 336, 936
GluI GCNGC 7 cut(s) 97, 331, 378, 381, 459, 688, 878
GsuI CTGGAG 3 cut(s) 403, 617, 920
HaeIII GGCC 8 cut(s) 236, 282, 352, 383, 429, 830, 845, 893
HapII CCGG 5 cut(s) 86, 157, 349, 374, 474
HgaI GACGC 2 cut(s) 390, 866
HhaI GCGC 4 cut(s) 124, 335, 337, 937
Hin1I GRCGYC 1 cut(s) 858
Hin1II CATG 8 cut(s) 122, 344, 533, 542, 835, 1043, 1108, 1117
Hin6I GCGC 4 cut(s) 122, 333, 335, 935
HinP1I GCGC 4 cut(s) 122, 333, 335, 935
HincII GTYRAC 1 cut(s) 1084
HindII GTYRAC 1 cut(s) 1084
HindIII AAGCTT 1 cut(s) 674
HinfI GANTC 2 cut(s) 141, 719
HpaII CCGG 5 cut(s) 86, 157, 349, 374, 474
HphI GGTGA 2 cut(s) 73, 716
Hpy166II GTNNAC 1 cut(s) 1084
Hpy188I TCNGA 4 cut(s) 226, 622, 814, 1067
Hpy188III TCNNGA 6 cut(s) 145, 294, 393, 530, 738, 782
Hpy8I GTNNAC 1 cut(s) 1084
Hpy99I CGWCG 4 cut(s) 406, 622, 1085, 1088
HpyAV CCTTC 5 cut(s) 6, 561, 620, 1127, 1133
HpyCH4III ACNGT 1 cut(s) 278
HpyCH4V TGCA 7 cut(s) 4, 330, 361, 458, 662, 1006, 1026
HpyF3I CTNAG 1 cut(s) 957
Hsp92I GRCGYC 1 cut(s) 858
Hsp92II CATG 8 cut(s) 122, 344, 533, 542, 835, 1043, 1108, 1117
HspAI GCGC 4 cut(s) 122, 333, 335, 935
KflI GGGWCCC 1 cut(s) 1073
KroI GCCGGC 1 cut(s) 373
KroNI GCCGGC 1 cut(s) 375
Ksp22I TGATCA 1 cut(s) 706
Kzo9I GATC 4 cut(s) 55, 130, 706, 921
LmnI GCTCC 6 cut(s) 88, 206, 466, 598, 943, 998
Lsp1109I GCAGC 3 cut(s) 83, 342, 470
MaeI CTAG 2 cut(s) 134, 1053
MaeIII GTNAC 3 cut(s) 209, 1055, 1109
MalI GATC 4 cut(s) 57, 132, 708, 923
MboI GATC 4 cut(s) 55, 130, 706, 921
MboII GAAGA 6 cut(s) 21, 76, 79, 659, 866, 876
MhlI GDGCHC 4 cut(s) 86, 203, 318, 410
MlsI TGGCCA 2 cut(s) 429, 830
MluCI AATT 1 cut(s) 356
MluNI TGGCCA 2 cut(s) 429, 830
MmeI TCCRAC 2 cut(s) 600, 1045
Mox20I TGGCCA 2 cut(s) 429, 830
MroNI GCCGGC 1 cut(s) 373
MroXI GAANNNNTTC 1 cut(s) 152
MscI TGGCCA 2 cut(s) 429, 830
MseI TTAA 2 cut(s) 441, 603
MslI CAYNNNNRTG 1 cut(s) 1038
Msp20I TGGCCA 2 cut(s) 429, 830
MspI CCGG 5 cut(s) 86, 157, 349, 374, 474
MspR9I CCNGG 2 cut(s) 86, 474
MvnI CGCG 3 cut(s) 335, 337, 699
NaeI GCCGGC 1 cut(s) 375
NciI CCSGG 2 cut(s) 86, 474
NcoI CCATGG 1 cut(s) 831
NdeII GATC 4 cut(s) 55, 130, 706, 921
NgoMIV GCCGGC 1 cut(s) 373
NlaIII CATG 8 cut(s) 122, 344, 533, 542, 835, 1043, 1108, 1117
NlaIV GGNNCC 5 cut(s) 24, 90, 256, 1074, 1075
NmeAIII GCCGAG 4 cut(s) 105, 117, 919, 1080
NspI RCATGY 2 cut(s) 344, 1117
PagI TCATGA 1 cut(s) 529
PauI GCGCGC 1 cut(s) 333
PceI AGGCCT 1 cut(s) 845
PciI ACATGT 2 cut(s) 340, 1113
PdiI GCCGGC 1 cut(s) 375
PdmI GAANNNNTTC 1 cut(s) 152
PfeI GAWTC 2 cut(s) 141, 719
PkrI GCNGC 7 cut(s) 98, 332, 379, 382, 460, 689, 879
PpuMI RGGWCCY 1 cut(s) 1073
PscI ACATGT 2 cut(s) 340, 1113
PshBI ATTAAT 1 cut(s) 441
PsiI TTATAA 1 cut(s) 521
Psp5II RGGWCCY 1 cut(s) 1073
PspN4I GGNNCC 5 cut(s) 24, 90, 256, 1074, 1075
PspPI GGNCC 2 cut(s) 235, 1073
PspPPI RGGWCCY 1 cut(s) 1073
PteI GCGCGC 1 cut(s) 333
RsaI GTAC 1 cut(s) 219
RsaNI GTAC 1 cut(s) 218
RseI CAYNNNNRTG 1 cut(s) 1038
SalI GTCGAC 1 cut(s) 1082
SaqAI TTAA 2 cut(s) 441, 603
SatI GCNGC 7 cut(s) 97, 331, 378, 381, 459, 688, 878
Sau3AI GATC 4 cut(s) 55, 130, 706, 921
Sau96I GGNCC 2 cut(s) 235, 1073
ScrFI CCNGG 2 cut(s) 86, 474
SduI GDGCHC 4 cut(s) 86, 203, 318, 410
SgrDI CGTCGACG 1 cut(s) 1082
SinI GGWCC 1 cut(s) 1073
SmiMI CAYNNNNRTG 1 cut(s) 1038
Sse9I AATT 1 cut(s) 356
SseBI AGGCCT 1 cut(s) 845
SspMI CTAG 2 cut(s) 134, 1053
StuI AGGCCT 1 cut(s) 845
StyD4I CCNGG 2 cut(s) 84, 472
StyI CCWWGG 1 cut(s) 831
TaaI ACNGT 1 cut(s) 278
TaqI TCGA 3 cut(s) 404, 640, 1083
TasI AATT 1 cut(s) 356
TauI GCSGC 4 cut(s) 380, 383, 690, 880
TfiI GAWTC 2 cut(s) 141, 719
Tru1I TTAA 2 cut(s) 441, 603
Tru9I TTAA 2 cut(s) 441, 603
TseI GCWGC 3 cut(s) 96, 330, 458
TspDTI ATGAA 2 cut(s) 298, 761
TspGWI ACGGA 1 cut(s) 1069
VpaK11BI GGWCC 1 cut(s) 1073
VspI ATTAAT 1 cut(s) 441
XceI RCATGY 2 cut(s) 344, 1117
XmiI GTMKAC 1 cut(s) 1083
XmnI GAANNNNTTC 1 cut(s) 152
XspI CTAG 2 cut(s) 134, 1053
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.