Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0006001

Physical Location & Seq

Genomic Coordinates Reverse (-)

53384067 .. 53386018

Gene Structure 1952 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0361000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1749 bp

ATGTCACTCTTGCAGTCATGTAAGAGTATAAAGCAACTTCACCAGATACAGGCGCAGGTAACCCTCCACGGGTTTTCACAGAACGGCTACGTTACCCCGAAATTAGTCACGGCATGTGCGGAACTGAAGCAAATGGGTTATGCCCACCAGGTGTTCGATCAAATTCCTGAACCAAATTTTGCTCTATGGAATGCATTGTTGAGAGGGTATGCAAAGAATGAGAGTCATAGGGAGGTTGTAGCTTTGTTTGGAAGGATGAAGAGCATGGACATAATGCCAAATTGCTATACATTCCCCGTTGTGATTAAATGTTGTGGGAGATTGAGTAGGTTGGTAGAAGGTGAAGAGGTGCATTGTGTTGTGATAAAATGTGGGTTTAGAGCAAACCCCTTTGTGGGAACGACGCTGATCGAAATGTATGCGGCTGGGGGAGTAATTGGAGCTGCTTATAAGGTGTTTGGTGAGATGTTTGAGAGAAATGTGGTTGCTTGGACTTCCATGATTAATGGCTACATTTTGGGTGGTGATATGGTTTCTGCACAGTGCCTTTTTGACTTGGCGCCAGAACGAGATGTTGTGTTGTGGAACACTATGGTTTCTGGTTATATTGAGCAGGGGGATATGGTAACGGCTAGAAAACTTTTTGATAAGATGCCGAGAAGAGATGTTATTTGCTGGAATACGGTATTGAATGGCTATGCAAGTAATCAAGACATTGAGGCTTGTGAGGATTTGTTTGAGAAGATGCCTGAGAGGAACGTTTTCTCGTGGAATGGATTGATTGGCGGGTATGCACGCAATGGACGTTTCATTGAAGTTCTGGAATCTTTCAAGCGGATGCTTACTGAGGGTAATGTGCTTCCTAACGATCCCACATTAACAACTGTGCTGTCAGCATGTGCGAGATTAGGAGCTCTTGATTTGGGTAAGTGGGTGCATGTATATGCAGAGAACATAGGATACAAGAGAAATGTATATGTTGGGAATGCGTTGATTGACATGTATGCAAAATGTGGTGTTGTTGACAATGCGGTAGATGTCTTCAAGAACATGGATAAGAAAGATTTAATTACTTGGAACACTATAATATGTGGCTTAGCAACACATGGACGCGGGGGTGATGCCTTAAAGTTGTTTTCACACATGAAGACTTCTGGATTGAAACCAGATGGGATCACCTTCATAGGCATTCTGTGCTCTTGTACACATCTAGGATTAGTCGAAGATGGCCTGTTGTATTTCCAATCAATGGTTAGTGACTATTCAATTGTGCCTCAAATTGAGCATTATGGTTGTATGGTTGATCTGTTTGGACGAGCCGGTCTTTTGGAACAGGCTGTGGAGTTTGTGAGGCAGATGCCAATAGAGGCAGATGTTGTCATTTGGGCTGCCTTACTTGGAGCATGTCGAACTCACAAGAACATTGAGTTGGCTGAGTTGGCTCTTGAACGGCTCATTGAACTTGAACCAAAAAACCCTGCCAATTATGTCATGCTTTCGAATATATATGGTGATCTTGGGAGATGGAAAGATGTGGCAAGATTAAAAGTTGCAATCAGGGATACCGGGTTCAAAAAATTCCCCGGTATTAGCTCTATTGAGGCCAATCATGGTGTGGTTGAATTTTGTTCCTTGGATAAGAGGCATCCTGAGACCGAGGAAATATATGAAGCCTTGAAGGGATTGACCAGTGCGCTAAGATCATCTGGATATGTACCAGACATTCTGGAGCTTGGGCATGGAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009791 GO:0009846 GO:0009856 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009987 GO:0010033 GO:0010208 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010927 GO:0010941 GO:0010942 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0022607 GO:0030198 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0042221 GO:0043062 GO:0043067 GO:0043068 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044464 GO:0044706 GO:0045229 GO:0045893 GO:0045935 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048466 GO:0048518 GO:0048522 GO:0048608 GO:0048646 GO:0048653 GO:0048654 GO:0048655 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051716 GO:0055046 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071396 GO:0071407 GO:0071495 GO:0071840 GO:0080090 GO:0085029 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD

Protein Analysis

582

Amino Acids

64.79

Weight (kDa)

5.92

Isoelectric Point (pI)

44.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	58 - 106	1.8e-09	PPR repeat family
PPR_2	PF13041	190 - 222	6.6e-07	PPR repeat family
PPR	PF01535	193 - 222	8.4e-06	PPR repeat
PPR_2	PF13041	221 - 254	1.3e-06	PPR repeat family
PPR	PF01535	225 - 254	9e-06	PPR repeat
PPR_2	PF13041	252 - 302	5.1e-07	PPR repeat family
PPR	PF01535	255 - 284	3e-06	PPR repeat
PPR_2	PF13041	355 - 401	7.2e-11	PPR repeat family
E_motif	PF20431	472 - 534	1.4e-22	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006001)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22260
fragaria_vesca	FvH4_4g35820 FvH4_4g35830 FvH4_4g35830
malus_domestica	MD16G1012700.v1.1
prunus_persica	Prupe.1G338600_v2.0.a1
pyrus_communis	pycom16g01190
rosa_chinensis	RchiOBHm_Chr4g0445351 RchiOBHm_Chr4g0445361
rosa_laevigata	RLG00000005745 RLG00000005746
rosa_multiflora	Rmu_sc0000050.1_g000007 Rmu_sc0000050.1_g000008 Rmu_sc0000050.1_g000009
rosa_roxburghii	Rroxscaffold_5G00385870 Rroxscaffold_5G00385880
rosa_rugosa	Rorug04G0361000
rosa_samantha	Rh4AG422000 Rh4AG422100 Rh4BG434000 Rh4BG434100 Rh4CG448900 Rh4CG449000 Rh4DG430000 Rh4DG430100
rosa_wichuraiana	Rw4G036200 Rw4G036210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	450
AasI	GACNNNNNNGTC	1 cut(s)	1320
Acc36I	ACCTGC	1 cut(s)	46
AccB1I	GGYRCC	1 cut(s)	559
AccB7I	CCANNNNNTGG	1 cut(s)	1249
AccII	CGCG	1 cut(s)	1113
AciI	CCGC	6 cut(s)	119, 422, 786, 835, 1031, 1113
AclI	AACGTT	1 cut(s)	759
AclWI	GGATC	2 cut(s)	863, 1181
AcsI	RAATTY	4 cut(s)	162, 175, 1577, 1622
AcuI	CTGAAG	1 cut(s)	146
AcyI	GRCGYC	1 cut(s)	560
AdeI	CACNNNGTG	1 cut(s)	151
AfaI	GTAC	2 cut(s)	1204, 1716
AfiI	CCNNNNNNNGG	5 cut(s)	49, 69, 394, 395, 1249
AflIII	ACRYGT	1 cut(s)	999
AjnI	CCWGG	1 cut(s)	147
AjuI	GAANNNNNNNTTGG	2 cut(s)	1412, 1444
AloI	GAACNNNNNNTCC	2 cut(s)	1553, 1585
AluBI	AGCT	5 cut(s)	242, 443, 914, 1593, 1732
AluI	AGCT	5 cut(s)	242, 443, 914, 1593, 1732
Alw21I	GWGCWC	2 cut(s)	916, 1199
Alw26I	GTCTC	2 cut(s)	1646, 1737
AlwI	GGATC	2 cut(s)	863, 1181
AoxI	GGCC	2 cut(s)	1228, 1602
ApeKI	GCWGC	2 cut(s)	443, 1388
ApoI	RAATTY	4 cut(s)	162, 175, 1577, 1622
AseI	ATTAAT	1 cut(s)	504
Asp700I	GAANNNNTTC	1 cut(s)	761
AspLEI	GCGC	3 cut(s)	55, 562, 1696
AsuC2I	CCSGG	2 cut(s)	1567, 1584
AsuHPI	GGTGA	7 cut(s)	32, 353, 473, 536, 1130, 1168, 1523
AsuII	TTCGAA	1 cut(s)	1499
BanI	GGYRCC	1 cut(s)	559
BanII	GRGCYC	1 cut(s)	916
BauI	CACGAG	1 cut(s)	766
BbsI	GAAGAC	2 cut(s)	1033, 1154
Bbv12I	GWGCWC	2 cut(s)	916, 1199
BbvI	GCAGC	2 cut(s)	430, 1375
BccI	CCATC	3 cut(s)	1163, 1220, 1518
BceAI	ACGGC	4 cut(s)	100, 126, 645, 1466
BcgI	CGANNNNNNTGC	2 cut(s)	401, 435
BciT130I	CCWGG	1 cut(s)	149
BciVI	GTATCC	2 cut(s)	953, 1555
BcnI	CCSGG	2 cut(s)	1567, 1584
BcoDI	GTCTC	2 cut(s)	1646, 1737
BfaI	CTAG	3 cut(s)	633, 1211, 1747
BfoI	RGCGCY	1 cut(s)	563
BfuAI	ACCTGC	1 cut(s)	46
BfuI	GTATCC	2 cut(s)	953, 1555
BisI	GCNGC	3 cut(s)	423, 444, 1389
BlpI	GCTNAGC	1 cut(s)	1096
BlsI	GCNGC	3 cut(s)	424, 445, 1390
Bme1390I	CCNGG	3 cut(s)	149, 1567, 1584
BmiI	GGNNCC	1 cut(s)	561
BmrFI	CCNGG	3 cut(s)	149, 1567, 1584
BmsI	GCATC	6 cut(s)	642, 735, 828, 1111, 1347, 1654
BpiI	GAAGAC	2 cut(s)	1033, 1154
BpmI	CTGGAG	1 cut(s)	1748
Bpu1102I	GCTNAGC	1 cut(s)	1096
Bpu14I	TTCGAA	1 cut(s)	1499
BpuMI	CCSGG	2 cut(s)	1567, 1584
BsaHI	GRCGYC	1 cut(s)	560
BsaI	GGTCTC	1 cut(s)	1646
BsaJI	CCNNGG	4 cut(s)	67, 1582, 1632, 1656
BsaXI	ACNNNNNCTCC	2 cut(s)	310, 340
Bsc4I	CCNNNNNNNGG	5 cut(s)	49, 69, 394, 395, 1249
Bse118I	RCCGGY	1 cut(s)	1319
Bse1I	ACTGG	1 cut(s)	1689
Bse3DI	GCAATG	1 cut(s)	805
BseBI	CCWGG	1 cut(s)	149
BseDI	CCNNGG	4 cut(s)	67, 1582, 1632, 1656
BseGI	GGATG	3 cut(s)	261, 843, 1645
BseLI	CCNNNNNNNGG	5 cut(s)	49, 69, 394, 395, 1249
BseMI	GCAATG	1 cut(s)	805
BseMII	CTCAG	4 cut(s)	741, 837, 1425, 1641
BseNI	ACTGG	1 cut(s)	1689
BseXI	GCAGC	2 cut(s)	430, 1375
BseYI	CCCAGC	1 cut(s)	425
BsgI	GTGCAG	1 cut(s)	522
Bsh1236I	CGCG	1 cut(s)	1113
BshFI	GGCC	2 cut(s)	1230, 1604
BshNI	GGYRCC	1 cut(s)	559
BsiHKAI	GWGCWC	2 cut(s)	916, 1199
BsiSI	CCGG	3 cut(s)	1320, 1566, 1584
BslI	CCNNNNNNNGG	5 cut(s)	49, 69, 394, 395, 1249
BsmAI	GTCTC	2 cut(s)	1646, 1737
BsmI	GAATGC	3 cut(s)	196, 991, 1188
BsnI	GGCC	2 cut(s)	1230, 1604
Bso31I	GGTCTC	1 cut(s)	1646
Bsp119I	TTCGAA	1 cut(s)	1499
Bsp1286I	GDGCHC	2 cut(s)	916, 1199
Bsp1407I	TGTACA	1 cut(s)	1202
Bsp143I	GATC	7 cut(s)	157, 408, 868, 1173, 1303, 1513, 1700
Bsp1720I	GCTNAGC	1 cut(s)	1096
BspACI	CCGC	6 cut(s)	119, 422, 786, 835, 1031, 1113
BspANI	GGCC	2 cut(s)	1230, 1604
BspCNI	CTCAG	4 cut(s)	742, 838, 1426, 1642
BspFNI	CGCG	1 cut(s)	1113
BspLI	GGNNCC	1 cut(s)	561
BspMI	ACCTGC	1 cut(s)	46
BspPI	GGATC	2 cut(s)	863, 1181
BspQI	GCTCTTC	1 cut(s)	254
BspT104I	TTCGAA	1 cut(s)	1499
BspT107I	GGYRCC	1 cut(s)	559
BspTNI	GGTCTC	1 cut(s)	1646
BsrDI	GCAATG	1 cut(s)	805
BsrFI	RCCGGY	1 cut(s)	1319
BsrGI	TGTACA	1 cut(s)	1202
BsrI	ACTGG	1 cut(s)	1689
BssAI	RCCGGY	1 cut(s)	1319
BssECI	CCNNGG	4 cut(s)	67, 1582, 1632, 1656
BssMI	GATC	7 cut(s)	157, 408, 868, 1173, 1303, 1513, 1700
BssNI	GRCGYC	1 cut(s)	560
BssSI	CACGAG	1 cut(s)	766
BssT1I	CCWWGG	1 cut(s)	1632
Bst2BI	CACGAG	1 cut(s)	766
Bst2UI	CCWGG	1 cut(s)	149
Bst4CI	ACNGT	3 cut(s)	543, 685, 886
Bst6I	CTCTTC	3 cut(s)	254, 339, 655
BstACI	GRCGYC	1 cut(s)	560
BstAPI	GCANNNNNTGC	1 cut(s)	1194
BstAUI	TGTACA	1 cut(s)	1202
BstBI	TTCGAA	1 cut(s)	1499
BstC8I	GCNNGC	1 cut(s)	796
BstDEI	CTNAG	6 cut(s)	750, 846, 1096, 1434, 1650, 1697
BstDSI	CCRYGG	1 cut(s)	67
BstEII	GGTNACC	1 cut(s)	58
BstF5I	GGATG	3 cut(s)	261, 843, 1645
BstFNI	CGCG	1 cut(s)	1113
BstH2I	RGCGCY	1 cut(s)	563
BstHHI	GCGC	3 cut(s)	55, 562, 1696
BstKTI	GATC	7 cut(s)	160, 411, 871, 1176, 1306, 1516, 1703
BstMAI	GTCTC	2 cut(s)	1646, 1737
BstMBI	GATC	7 cut(s)	157, 408, 868, 1173, 1303, 1513, 1700
BstMWI	GCNNNNNNNGC	2 cut(s)	1194, 1439
BstNI	CCWGG	1 cut(s)	149
BstNSI	RCATGY	5 cut(s)	117, 900, 941, 1003, 1407
BstPI	GGTNACC	1 cut(s)	58
BstSCI	CCNGG	3 cut(s)	147, 1565, 1582
BstUI	CGCG	1 cut(s)	1113
BstV1I	GCAGC	2 cut(s)	430, 1375
BstV2I	GAAGAC	2 cut(s)	1033, 1154
BsuI	GTATCC	2 cut(s)	953, 1555
BsuRI	GGCC	2 cut(s)	1230, 1604
BtgI	CCRYGG	1 cut(s)	67
BtsCI	GGATG	3 cut(s)	261, 843, 1645
BtsIMutI	CAGTG	2 cut(s)	548, 1696
BveI	ACCTGC	1 cut(s)	46
Cac8I	GCNNGC	1 cut(s)	796
CfoI	GCGC	3 cut(s)	55, 562, 1696
Cfr10I	RCCGGY	1 cut(s)	1319
CseI	GACGC	2 cut(s)	412, 1119
CsiI	ACCWGGT	1 cut(s)	147
Csp6I	GTAC	2 cut(s)	1203, 1715
CviQI	GTAC	2 cut(s)	1203, 1715
DdeI	CTNAG	6 cut(s)	750, 846, 1096, 1434, 1650, 1697
DinI	GGCGCC	1 cut(s)	561
DpnI	GATC	7 cut(s)	159, 410, 870, 1175, 1305, 1515, 1702
DpnII	GATC	7 cut(s)	157, 408, 868, 1173, 1303, 1513, 1700
DraIII	CACNNNGTG	1 cut(s)	151
DrdI	GACNNNNNNGTC	1 cut(s)	1320
DseDI	GACNNNNNNGTC	1 cut(s)	1320
Eam1104I	CTCTTC	3 cut(s)	254, 339, 655
EarI	CTCTTC	3 cut(s)	254, 339, 655
Ecl136II	GAGCTC	1 cut(s)	914
Eco130I	CCWWGG	1 cut(s)	1632
Eco24I	GRGCYC	1 cut(s)	916
Eco31I	GGTCTC	1 cut(s)	1646
Eco53kI	GAGCTC	1 cut(s)	914
Eco57I	CTGAAG	1 cut(s)	146
Eco91I	GGTNACC	1 cut(s)	58
EcoICRI	GAGCTC	1 cut(s)	914
EcoO65I	GGTNACC	1 cut(s)	58
EcoRII	CCWGG	1 cut(s)	147
EcoT14I	CCWWGG	1 cut(s)	1632
EcoT22I	ATGCAT	1 cut(s)	196
EcoT38I	GRGCYC	1 cut(s)	916
EgeI	GGCGCC	1 cut(s)	561
EheI	GGCGCC	1 cut(s)	561
ErhI	CCWWGG	1 cut(s)	1632
FauI	CCCGC	2 cut(s)	779, 1106
Fnu4HI	GCNGC	3 cut(s)	423, 444, 1389
FokI	GGATG	3 cut(s)	268, 850, 1632
FriOI	GRGCYC	1 cut(s)	916
Fsp4HI	GCNGC	3 cut(s)	423, 444, 1389
FspBI	CTAG	3 cut(s)	633, 1211, 1747
GlaI	GCGC	3 cut(s)	54, 561, 1695
GluI	GCNGC	3 cut(s)	423, 444, 1389
GsaI	CCCAGC	1 cut(s)	429
GsuI	CTGGAG	1 cut(s)	1748
HaeII	RGCGCY	1 cut(s)	563
HaeIII	GGCC	2 cut(s)	1230, 1604
HapII	CCGG	3 cut(s)	1320, 1566, 1584
HgaI	GACGC	2 cut(s)	412, 1119
HhaI	GCGC	3 cut(s)	55, 562, 1696
Hin1I	GRCGYC	1 cut(s)	560
Hin6I	GCGC	3 cut(s)	53, 560, 1694
HinP1I	GCGC	3 cut(s)	53, 560, 1694
HincII	GTYRAC	1 cut(s)	1024
HindII	GTYRAC	1 cut(s)	1024
HinfI	GANTC	2 cut(s)	223, 824
HpaII	CCGG	3 cut(s)	1320, 1566, 1584
HphI	GGTGA	7 cut(s)	32, 353, 473, 536, 1130, 1168, 1523
Hpy166II	GTNNAC	2 cut(s)	1024, 1205
Hpy8I	GTNNAC	2 cut(s)	1024, 1205
Hpy99I	CGWCG	1 cut(s)	406
HpyAV	CCTTC	4 cut(s)	246, 332, 1189, 1672
HpyCH4III	ACNGT	3 cut(s)	543, 685, 886
HpyCH4IV	ACGT	3 cut(s)	90, 759, 805
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1194, 1439
HpyF3I	CTNAG	6 cut(s)	750, 846, 1096, 1434, 1650, 1697
HpySE526I	ACGT	3 cut(s)	90, 759, 805
Hsp92I	GRCGYC	1 cut(s)	560
HspAI	GCGC	3 cut(s)	53, 560, 1694
KasI	GGCGCC	1 cut(s)	559
Kzo9I	GATC	7 cut(s)	157, 408, 868, 1173, 1303, 1513, 1700
LguI	GCTCTTC	1 cut(s)	254
LmnI	GCTCC	4 cut(s)	440, 911, 1400, 1729
Lsp1109I	GCAGC	2 cut(s)	430, 1375
LweI	GCATC	6 cut(s)	642, 735, 828, 1111, 1347, 1654
MabI	ACCWGGT	1 cut(s)	147
MaeI	CTAG	3 cut(s)	633, 1211, 1747
MaeII	ACGT	3 cut(s)	90, 759, 805
MaeIII	GTNAC	6 cut(s)	3, 58, 91, 106, 625, 1256
MalI	GATC	7 cut(s)	159, 410, 870, 1175, 1305, 1515, 1702
MboI	GATC	7 cut(s)	157, 408, 868, 1173, 1303, 1513, 1700
MboII	GAAGA	7 cut(s)	271, 356, 672, 754, 1033, 1159, 1235
MfeI	CAATTG	1 cut(s)	1266
MhlI	GDGCHC	2 cut(s)	916, 1199
Mly113I	GGCGCC	1 cut(s)	560
MlyI	GAGTC	1 cut(s)	232
Mph1103I	ATGCAT	1 cut(s)	196
MroXI	GAANNNNTTC	1 cut(s)	761
MseI	TTAA	6 cut(s)	306, 504, 878, 1067, 1127, 1544
MslI	CAYNNNNRTG	1 cut(s)	942
MspI	CCGG	3 cut(s)	1320, 1566, 1584
MspR9I	CCNGG	3 cut(s)	149, 1567, 1584
MunI	CAATTG	1 cut(s)	1266
Mva1269I	GAATGC	3 cut(s)	196, 991, 1188
MvaI	CCWGG	1 cut(s)	149
MvnI	CGCG	1 cut(s)	1113
MwoI	GCNNNNNNNGC	2 cut(s)	1194, 1439
NarI	GGCGCC	1 cut(s)	560
NciI	CCSGG	2 cut(s)	1567, 1584
NdeII	GATC	7 cut(s)	157, 408, 868, 1173, 1303, 1513, 1700
NlaIV	GGNNCC	1 cut(s)	561
NmeAIII	GCCGAG	1 cut(s)	681
NmuCI	GTSAC	3 cut(s)	3, 106, 1256
NsiI	ATGCAT	1 cut(s)	196
NspI	RCATGY	5 cut(s)	117, 900, 941, 1003, 1407
NspV	TTCGAA	1 cut(s)	1499
PciI	ACATGT	1 cut(s)	999
PciSI	GCTCTTC	1 cut(s)	254
PcsI	WCGNNNNNNNCGW	1 cut(s)	802
PctI	GAATGC	3 cut(s)	196, 991, 1188
PdmI	GAANNNNTTC	1 cut(s)	761
PfeI	GAWTC	1 cut(s)	824
PflMI	CCANNNNNTGG	1 cut(s)	1249
PkrI	GCNGC	3 cut(s)	424, 445, 1390
PleI	GAGTC	1 cut(s)	231
PluTI	GGCGCC	1 cut(s)	563
PpsI	GAGTC	1 cut(s)	231
PscI	ACATGT	1 cut(s)	999
PshBI	ATTAAT	1 cut(s)	504
PsiI	TTATAA	1 cut(s)	450
Psp124BI	GAGCTC	1 cut(s)	916
Psp1406I	AACGTT	1 cut(s)	759
Psp6I	CCWGG	1 cut(s)	147
PspEI	GGTNACC	1 cut(s)	58
PspFI	CCCAGC	1 cut(s)	425
PspGI	CCWGG	1 cut(s)	147
PspN4I	GGNNCC	1 cut(s)	561
PsrI	GAACNNNNNNTAC	2 cut(s)	944, 976
RsaI	GTAC	2 cut(s)	1204, 1716
RsaNI	GTAC	2 cut(s)	1203, 1715
RseI	CAYNNNNRTG	1 cut(s)	942
SacI	GAGCTC	1 cut(s)	916
SapI	GCTCTTC	1 cut(s)	254
SaqAI	TTAA	6 cut(s)	306, 504, 878, 1067, 1127, 1544
SatI	GCNGC	3 cut(s)	423, 444, 1389
Sau3AI	GATC	7 cut(s)	157, 408, 868, 1173, 1303, 1513, 1700
SchI	GAGTC	1 cut(s)	232
ScrFI	CCNGG	3 cut(s)	149, 1567, 1584
SduI	GDGCHC	2 cut(s)	916, 1199
SexAI	ACCWGGT	1 cut(s)	147
SfaNI	GCATC	6 cut(s)	642, 735, 828, 1111, 1347, 1654
SfoI	GGCGCC	1 cut(s)	561
SfuI	TTCGAA	1 cut(s)	1499
SmiMI	CAYNNNNRTG	1 cut(s)	942
SsiI	CCGC	6 cut(s)	119, 422, 786, 835, 1031, 1113
SspDI	GGCGCC	1 cut(s)	559
SspMI	CTAG	3 cut(s)	633, 1211, 1747
SstI	GAGCTC	1 cut(s)	916
StyD4I	CCNGG	3 cut(s)	147, 1565, 1582
StyI	CCWWGG	1 cut(s)	1632
TaaI	ACNGT	3 cut(s)	543, 685, 886
TaiI	ACGT	3 cut(s)	93, 762, 808
TaqI	TCGA	5 cut(s)	156, 411, 1221, 1408, 1499
TaqII	GACCGA	1 cut(s)	1670
TatI	WGTACW	1 cut(s)	1202
TauI	GCSGC	1 cut(s)	425
TfiI	GAWTC	1 cut(s)	824
Tru1I	TTAA	6 cut(s)	306, 504, 878, 1067, 1127, 1544
Tru9I	TTAA	6 cut(s)	306, 504, 878, 1067, 1127, 1544
TscAI	CASTG	2 cut(s)	548, 1696
TseFI	GTSAC	3 cut(s)	3, 106, 1256
TseI	GCWGC	2 cut(s)	443, 1388
Tsp45I	GTSAC	3 cut(s)	3, 106, 1256
TspDTI	ATGAA	5 cut(s)	272, 799, 1160, 1171, 1683
TspRI	CASTG	2 cut(s)	548, 1696
Van91I	CCANNNNNTGG	1 cut(s)	1249
VspI	ATTAAT	1 cut(s)	504
XapI	RAATTY	4 cut(s)	162, 175, 1577, 1622
XceI	RCATGY	5 cut(s)	117, 900, 941, 1003, 1407
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1612
XmnI	GAANNNNTTC	1 cut(s)	761
XspI	CTAG	3 cut(s)	633, 1211, 1747
Zsp2I	ATGCAT	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.