Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0006001

Physical Location & Seq

Genomic Coordinates Forward (+)

63022772 .. 63025558

Gene Structure 2787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G036210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1419 bp

ATGTTGGCCAACAACAACCACACCAACACTAGTGTCTCCTCTGTTGCTCCTTCTTCTTCCTCTGATCATCATCATGCCTTCACTCCCTTAGAAAATGGAGCAGCAGCAGTGACCGCCACAAACAAAAGAAAACGCCGACCGGCCGGCACCCCAGATCCGGATGCGGAAGTGGTGTCTCTCTCCCCGAAAACGTTACTGGAGTCAGACCGTTACGTGTGCGAGATCTGTAACCAGGGGTTCCAGAGAGACCAGAATCTGCAGATGCACAGAAGAAGGCACAAGGTGCCGTGGAAGTTGCTGAAGCGGGAAATACAGGATCAGGTGAAGAAGAGGGTGTTTGTGTGCCCGGAGCCGAGCTGCCTCCACCACGACCCTTGCCATGCGCTCGGCGATCTCGTCGGAATCAAGAAGCACTTCCGGCGAAAGCACAGCAACCACAAGCAATGGGTGTGCGACAAGTGCTCCAAAGGTTACGCCGTACAATCCGATTACAAGGCCCATCTCAAAACCTGTGGCACCAGAGGACATTCCTGCGACTGTGGCCGTGTGTTTTCCAGAGTGGAGAGTTTCATTGAGCACCAAGATACTTGCAGCGTGCGACATGTTGTCCGGCCAGAATTGCAGGCACTTCAGCCGGCGGCGGCCTGCTCATCACGAACAGCGTCGAGCACCAGCCCCTCCAGCGACGGCCATTTCAGCATTAATAATAACAACAATGCAGCTCCTCCATTGCCCGGATTACCAGTAATGCCAAAGCCAAATGACCAACCTGTTGTGTTTATAAGCTCTCATGAGGGGCATGATGGTAATCCTTCCACTTCTAACCACCAACACCAACACCAACAGCCACGAGAACAAGTGCTGGAACTTAAACTCCTTCCATCGTCGGACACACAAACCTCCCCTCGAAACGAAGACGAGAACTATGCAACGCATTTGAAGCTTTCCATAGGCGGCTCATCACGCGGTGGTGATCAAAAGAATGATTCGCCCCGAAGCTCATCAAGAGAAATGAACACAAACATTGGTTTTGGTGGTAGAGCAAGTCGGGAAGTGGCGAGGCTGAAAGACTTTGCCTCCGAGGAGTTGAAGTTGGCCATGGCGGAAAAGGCCTACGCCGAAGACGCTAGACGAGAAGCCAAGCGGCAAATAGAGATGGCCGAGCTGGAGTTCGCAAACGCAAAGAGGATCAGGCAACAAGCGCAGGCGGAGCTTCAAAAGGCTCAGCTACTAAAAGAGCAATCCACCAAGAAAATCAGCTCCGCCATTATGCAAATCACTTGTCCATCTTGCAAGCAACACTTCCATGCGAGTAATCCTAGTAACGCAGTCGGGGTGGGACCCTCAGTCGACGAGACGACCTCCCTCGGCATGAGTTACATGTCCTCCGCCACAACCGAAGGAGAAGGAGAACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006109 GO:0006355 GO:0007275 GO:0008150 GO:0009581 GO:0009582 GO:0009590 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009653 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009959 GO:0009965 GO:0010016 GO:0010031 GO:0010468 GO:0010556 GO:0010600 GO:0010601 GO:0010675 GO:0010817 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032350 GO:0032352 GO:0032501 GO:0032502 GO:0032879 GO:0032881 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044212 GO:0044424 GO:0044464 GO:0046885 GO:0046886 GO:0046982 GO:0046983 GO:0048366 GO:0048367 GO:0048437 GO:0048444 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050879 GO:0050896 GO:0051049 GO:0051171 GO:0051252 GO:0051606 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0090354 GO:0090355 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000012 GO:2000112 GO:2000904 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2 zf-met

Protein Analysis

472

Amino Acids

52.15

Weight (kDa)

8.84

Isoelectric Point (pI)

64.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2H2-2nd_BIRD-IDD	PF22996	109 - 143	4.6e-18	BIRD-IDD transcription factor, second C2H2 zinc finger
C2CH-3rd_BIRD-IDD	PF22995	148 - 172	4.1e-14	BIRD-IDD transcription factor, third C2HC zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006001)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22260
fragaria_vesca	FvH4_4g35820 FvH4_4g35830 FvH4_4g35830
malus_domestica	MD16G1012700.v1.1
prunus_persica	Prupe.1G338600_v2.0.a1
pyrus_communis	pycom16g01190
rosa_chinensis	RchiOBHm_Chr4g0445351 RchiOBHm_Chr4g0445361
rosa_laevigata	RLG00000005745 RLG00000005746
rosa_multiflora	Rmu_sc0000050.1_g000007 Rmu_sc0000050.1_g000008 Rmu_sc0000050.1_g000009
rosa_roxburghii	Rroxscaffold_5G00385870 Rroxscaffold_5G00385880
rosa_rugosa	Rorug04G0361000
rosa_samantha	Rh4AG422000 Rh4AG422100 Rh4BG434000 Rh4BG434100 Rh4CG448900 Rh4CG449000 Rh4DG430000 Rh4DG430100
rosa_wichuraiana	Rw4G036200 Rw4G036210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	782
AccB1I	GGYRCC	3 cut(s)	146, 283, 515
AccI	GTMKAC	1 cut(s)	1350
AccII	CGCG	1 cut(s)	966
AccIII	TCCGGA	1 cut(s)	157
AclI	AACGTT	1 cut(s)	191
AclWI	GGATC	3 cut(s)	149, 324, 1196
AcoI	YGGCCR	7 cut(s)	6, 141, 541, 611, 688, 1095, 1158
AcuI	CTGAAG	2 cut(s)	320, 614
AdeI	CACNNNGTG	2 cut(s)	283, 968
AfaI	GTAC	1 cut(s)	480
AfiI	CCNNNNNNNGG	2 cut(s)	157, 734
AflIII	ACRYGT	3 cut(s)	213, 601, 1380
AgsI	TTSAA	3 cut(s)	940, 1090, 1217
AhdI	GACNNNNNGTC	2 cut(s)	605, 1346
AhlI	ACTAGT	1 cut(s)	29
AjnI	CCWGG	1 cut(s)	231
AloI	GAACNNNNNNTCC	2 cut(s)	858, 890
AluBI	AGCT	9 cut(s)	357, 722, 786, 943, 999, 1165, 1213, 1228, 1260
AluI	AGCT	9 cut(s)	357, 722, 786, 943, 999, 1165, 1213, 1228, 1260
Alw21I	GWGCWC	3 cut(s)	464, 579, 671
Alw26I	GTCTC	4 cut(s)	40, 180, 240, 1349
AlwI	GGATC	3 cut(s)	149, 324, 1196
AlwNI	CAGNNNCTG	1 cut(s)	256
Aor13HI	TCCGGA	1 cut(s)	157
ApeKI	GCWGC	5 cut(s)	101, 104, 357, 591, 719
ArsI	GACNNNNNNTTYG	2 cut(s)	1267, 1299
AseI	ATTAAT	1 cut(s)	702
Asp700I	GAANNNNTTC	1 cut(s)	413
AspLEI	GCGC	2 cut(s)	385, 1204
AspS9I	GGNCC	2 cut(s)	496, 1340
AsuC2I	CCSGG	2 cut(s)	347, 735
AsuHPI	GGTGA	2 cut(s)	334, 983
AvaII	GGWCC	1 cut(s)	1340
BaeGI	GKGCMC	1 cut(s)	347
BalI	TGGCCA	2 cut(s)	8, 1097
BanI	GGYRCC	3 cut(s)	146, 283, 515
BauI	CACGAG	1 cut(s)	849
BbsI	GAAGAC	2 cut(s)	921, 1128
Bbv12I	GWGCWC	3 cut(s)	464, 579, 671
BbvI	GCAGC	5 cut(s)	113, 116, 344, 603, 731
BccI	CCATC	5 cut(s)	507, 797, 889, 1150, 1294
BceAI	ACGGC	4 cut(s)	271, 461, 528, 703
BcgI	CGANNNNNNTGC	2 cut(s)	908, 942
BciT130I	CCWGG	1 cut(s)	233
BclI	TGATCA	2 cut(s)	64, 973
BcnI	CCSGG	2 cut(s)	347, 735
BcoDI	GTCTC	4 cut(s)	40, 180, 240, 1349
BcuI	ACTAGT	1 cut(s)	29
BfaI	CTAG	3 cut(s)	30, 1128, 1320
BfmI	CTRYAG	1 cut(s)	257
BglII	AGATCT	1 cut(s)	222
BisI	GCNGC	9 cut(s)	102, 105, 358, 592, 639, 642, 720, 955, 1145
BlpI	GCTNAGC	1 cut(s)	1224
BlsI	GCNGC	9 cut(s)	103, 106, 359, 593, 640, 643, 721, 956, 1146
Bme1390I	CCNGG	3 cut(s)	233, 347, 735
Bme18I	GGWCC	1 cut(s)	1340
BmeRI	GACNNNNNGTC	2 cut(s)	605, 1346
BmgT120I	GGNCC	2 cut(s)	496, 1340
BmiI	GGNNCC	7 cut(s)	148, 239, 285, 351, 517, 1341, 1342
BmrFI	CCNGG	3 cut(s)	233, 347, 735
BmsI	GCATC	2 cut(s)	151, 252
BpiI	GAAGAC	2 cut(s)	921, 1128
BplI	GAGNNNNNCTC	2 cut(s)	1346, 1378
BpmI	CTGGAG	3 cut(s)	218, 664, 1187
Bpu1102I	GCTNAGC	1 cut(s)	1224
BpuMI	CCSGG	2 cut(s)	347, 735
BsaAI	YACGTR	1 cut(s)	214
BsaBI	GATNNNNATC	2 cut(s)	69, 807
BsaI	GGTCTC	1 cut(s)	240
BsaJI	CCNNGG	5 cut(s)	232, 287, 1080, 1098, 1366
BsaWI	WCCGGW	1 cut(s)	157
Bsc4I	CCNNNNNNNGG	2 cut(s)	157, 734
Bse118I	RCCGGY	3 cut(s)	139, 143, 634
Bse1I	ACTGG	2 cut(s)	201, 743
Bse3DI	GCAATG	2 cut(s)	449, 728
Bse8I	GATNNNNATC	2 cut(s)	69, 807
BseAI	TCCGGA	1 cut(s)	157
BseBI	CCWGG	1 cut(s)	233
BseDI	CCNNGG	5 cut(s)	232, 287, 1080, 1098, 1366
BseGI	GGATG	1 cut(s)	166
BseJI	GATNNNNATC	2 cut(s)	69, 807
BseLI	CCNNNNNNNGG	2 cut(s)	157, 734
BseMI	GCAATG	2 cut(s)	449, 728
BseMII	CTCAG	2 cut(s)	1238, 1359
BseNI	ACTGG	2 cut(s)	201, 743
BseRI	GAGGAG	3 cut(s)	28, 714, 1097
BseSI	GKGCMC	1 cut(s)	347
BseX3I	CGGCCG	1 cut(s)	141
BseXI	GCAGC	5 cut(s)	113, 116, 344, 603, 731
Bsh1236I	CGCG	1 cut(s)	966
Bsh1285I	CGRYCG	2 cut(s)	140, 144
BshNI	GGYRCC	3 cut(s)	146, 283, 515
BsiEI	CGRYCG	2 cut(s)	140, 144
BsiHKAI	GWGCWC	3 cut(s)	464, 579, 671
BsiSI	CCGG	8 cut(s)	140, 144, 158, 347, 418, 610, 635, 735
BslFI	GGGAC	1 cut(s)	1353
BslI	CCNNNNNNNGG	2 cut(s)	157, 734
BsmAI	GTCTC	4 cut(s)	40, 180, 240, 1349
BsmBI	CGTCTC	1 cut(s)	1349
BsmFI	GGGAC	1 cut(s)	1353
Bso31I	GGTCTC	1 cut(s)	240
Bsp1286I	GDGCHC	4 cut(s)	347, 464, 579, 671
Bsp13I	TCCGGA	1 cut(s)	157
Bsp143I	GATC	7 cut(s)	64, 154, 222, 316, 391, 973, 1188
Bsp1720I	GCTNAGC	1 cut(s)	1224
Bsp19I	CCATGG	1 cut(s)	1098
BspCNI	CTCAG	2 cut(s)	1237, 1358
BspEI	TCCGGA	1 cut(s)	157
BspFNI	CGCG	1 cut(s)	966
BspHI	TCATGA	1 cut(s)	790
BspLI	GGNNCC	7 cut(s)	148, 239, 285, 351, 517, 1341, 1342
BspMAI	CTGCAG	1 cut(s)	261
BspPI	GGATC	3 cut(s)	149, 324, 1196
BspT107I	GGYRCC	3 cut(s)	146, 283, 515
BspTNI	GGTCTC	1 cut(s)	240
BsrDI	GCAATG	2 cut(s)	449, 728
BsrFI	RCCGGY	3 cut(s)	139, 143, 634
BsrI	ACTGG	2 cut(s)	201, 743
BssAI	RCCGGY	3 cut(s)	139, 143, 634
BssECI	CCNNGG	5 cut(s)	232, 287, 1080, 1098, 1366
BssMI	GATC	7 cut(s)	64, 154, 222, 316, 391, 973, 1188
BssSI	CACGAG	1 cut(s)	849
BssT1I	CCWWGG	1 cut(s)	1098
Bst2BI	CACGAG	1 cut(s)	849
Bst2UI	CCWGG	1 cut(s)	233
Bst4CI	ACNGT	2 cut(s)	209, 539
Bst6I	CTCTTC	1 cut(s)	323
BstAPI	GCANNNNNTGC	1 cut(s)	283
BstBAI	YACGTR	1 cut(s)	214
BstC8I	GCNNGC	7 cut(s)	145, 596, 624, 636, 646, 1206, 1295
BstDEI	CTNAG	3 cut(s)	88, 1224, 1345
BstDSI	CCRYGG	2 cut(s)	287, 1098
BstF5I	GGATG	1 cut(s)	166
BstFNI	CGCG	1 cut(s)	966
BstHHI	GCGC	2 cut(s)	385, 1204
BstKTI	GATC	7 cut(s)	67, 157, 225, 319, 394, 976, 1191
BstMAI	GTCTC	4 cut(s)	40, 180, 240, 1349
BstMBI	GATC	7 cut(s)	64, 154, 222, 316, 391, 973, 1188
BstMCI	CGRYCG	2 cut(s)	140, 144
BstNI	CCWGG	1 cut(s)	233
BstNSI	RCATGY	2 cut(s)	605, 1384
BstSCI	CCNGG	3 cut(s)	231, 345, 733
BstSFI	CTRYAG	1 cut(s)	257
BstSLI	GKGCMC	1 cut(s)	347
BstUI	CGCG	1 cut(s)	966
BstV1I	GCAGC	5 cut(s)	113, 116, 344, 603, 731
BstV2I	GAAGAC	2 cut(s)	921, 1128
BstX2I	RGATCY	2 cut(s)	154, 222
BstYI	RGATCY	2 cut(s)	154, 222
BstZI	CGGCCG	1 cut(s)	141
BtgI	CCRYGG	2 cut(s)	287, 1098
BtsCI	GGATG	1 cut(s)	166
BtsI	GCAGTG	1 cut(s)	114
BtsIMutI	CAGTG	1 cut(s)	114
Cac8I	GCNNGC	7 cut(s)	145, 596, 624, 636, 646, 1206, 1295
CaiI	CAGNNNCTG	1 cut(s)	256
CciI	TCATGA	1 cut(s)	790
CfoI	GCGC	2 cut(s)	385, 1204
Cfr10I	RCCGGY	3 cut(s)	139, 143, 634
Cfr13I	GGNCC	2 cut(s)	496, 1340
CseI	GACGC	2 cut(s)	651, 1133
Csp6I	GTAC	1 cut(s)	479
CspCI	CAANNNNNGTGG	4 cut(s)	356, 391, 493, 528
CviAII	CATG	9 cut(s)	74, 380, 602, 791, 800, 1099, 1307, 1372, 1381
CviQI	GTAC	1 cut(s)	479
DdeI	CTNAG	3 cut(s)	88, 1224, 1345
DpnI	GATC	7 cut(s)	66, 156, 224, 318, 393, 975, 1190
DpnII	GATC	7 cut(s)	64, 154, 222, 316, 391, 973, 1188
DraIII	CACNNNGTG	2 cut(s)	283, 968
DriI	GACNNNNNGTC	2 cut(s)	605, 1346
EaeI	YGGCCR	7 cut(s)	6, 141, 541, 611, 688, 1095, 1158
EagI	CGGCCG	1 cut(s)	141
Eam1104I	CTCTTC	1 cut(s)	323
Eam1105I	GACNNNNNGTC	2 cut(s)	605, 1346
EarI	CTCTTC	1 cut(s)	323
EciI	GGCGGA	4 cut(s)	1118, 1223, 1252, 1378
EclXI	CGGCCG	1 cut(s)	141
Eco130I	CCWWGG	1 cut(s)	1098
Eco147I	AGGCCT	1 cut(s)	1112
Eco31I	GGTCTC	1 cut(s)	240
Eco47I	GGWCC	1 cut(s)	1340
Eco52I	CGGCCG	1 cut(s)	141
Eco57I	CTGAAG	2 cut(s)	320, 614
EcoO109I	RGGNCCY	1 cut(s)	1340
EcoRII	CCWGG	1 cut(s)	231
EcoT14I	CCWWGG	1 cut(s)	1098
ErhI	CCWWGG	1 cut(s)	1098
Esp3I	CGTCTC	1 cut(s)	1349
FaeI	CATG	9 cut(s)	77, 383, 605, 794, 803, 1102, 1310, 1375, 1384
FalI	AAGNNNNNCTT	4 cut(s)	398, 430, 1286, 1318
FaqI	GGGAC	1 cut(s)	1353
FatI	CATG	9 cut(s)	73, 379, 601, 790, 799, 1098, 1306, 1371, 1380
FauI	CCCGC	1 cut(s)	297
FbaI	TGATCA	2 cut(s)	64, 973
FblI	GTMKAC	1 cut(s)	1350
Fnu4HI	GCNGC	9 cut(s)	102, 105, 358, 592, 639, 642, 720, 955, 1145
FokI	GGATG	1 cut(s)	173
Fsp4HI	GCNGC	9 cut(s)	102, 105, 358, 592, 639, 642, 720, 955, 1145
FspBI	CTAG	3 cut(s)	30, 1128, 1320
GlaI	GCGC	2 cut(s)	384, 1203
GluI	GCNGC	9 cut(s)	102, 105, 358, 592, 639, 642, 720, 955, 1145
GsuI	CTGGAG	3 cut(s)	218, 664, 1187
HapII	CCGG	8 cut(s)	140, 144, 158, 347, 418, 610, 635, 735
HgaI	GACGC	2 cut(s)	651, 1133
HhaI	GCGC	2 cut(s)	385, 1204
Hin1II	CATG	9 cut(s)	77, 383, 605, 794, 803, 1102, 1310, 1375, 1384
Hin6I	GCGC	2 cut(s)	383, 1202
HinP1I	GCGC	2 cut(s)	383, 1202
HincII	GTYRAC	1 cut(s)	1351
HindII	GTYRAC	1 cut(s)	1351
HindIII	AAGCTT	1 cut(s)	941
HinfI	GANTC	4 cut(s)	200, 253, 402, 986
HpaII	CCGG	8 cut(s)	140, 144, 158, 347, 418, 610, 635, 735
HphI	GGTGA	2 cut(s)	334, 983
Hpy166II	GTNNAC	1 cut(s)	1351
Hpy188I	TCNGA	6 cut(s)	64, 205, 401, 487, 889, 1081
Hpy188III	TCNNGA	8 cut(s)	158, 241, 406, 555, 654, 791, 1005, 1049
Hpy8I	GTNNAC	1 cut(s)	1351
Hpy99I	CGWCG	5 cut(s)	401, 667, 689, 889, 1355
HpyAV	CCTTC	7 cut(s)	60, 88, 267, 822, 887, 1394, 1400
HpyCH4III	ACNGT	2 cut(s)	209, 539
HpyCH4IV	ACGT	2 cut(s)	191, 213
HpyCH4V	TGCA	8 cut(s)	259, 265, 591, 622, 719, 929, 1273, 1293
HpyF3I	CTNAG	3 cut(s)	88, 1224, 1345
HpySE526I	ACGT	2 cut(s)	191, 213
Hsp92II	CATG	9 cut(s)	77, 383, 605, 794, 803, 1102, 1310, 1375, 1384
HspAI	GCGC	2 cut(s)	383, 1202
KflI	GGGWCCC	1 cut(s)	1340
Kpn2I	TCCGGA	1 cut(s)	157
KroI	GCCGGC	2 cut(s)	143, 634
KroNI	GCCGGC	2 cut(s)	145, 636
Ksp22I	TGATCA	2 cut(s)	64, 973
Kzo9I	GATC	7 cut(s)	64, 154, 222, 316, 391, 973, 1188
LmnI	GCTCC	7 cut(s)	52, 98, 349, 467, 727, 1210, 1265
Lsp1109I	GCAGC	5 cut(s)	113, 116, 344, 603, 731
LweI	GCATC	2 cut(s)	151, 252
MaeI	CTAG	3 cut(s)	30, 1128, 1320
MaeII	ACGT	2 cut(s)	191, 213
MaeIII	GTNAC	7 cut(s)	109, 192, 209, 227, 470, 1322, 1376
MalI	GATC	7 cut(s)	66, 156, 224, 318, 393, 975, 1190
MboI	GATC	7 cut(s)	64, 154, 222, 316, 391, 973, 1188
MboII	GAAGA	7 cut(s)	45, 48, 282, 337, 340, 926, 1133
MflI	RGATCY	2 cut(s)	154, 222
MhlI	GDGCHC	4 cut(s)	347, 464, 579, 671
MlsI	TGGCCA	2 cut(s)	8, 1097
MluCI	AATT	1 cut(s)	617
MluNI	TGGCCA	2 cut(s)	8, 1097
MlyI	GAGTC	1 cut(s)	209
MmeI	TCCRAC	2 cut(s)	379, 867
Mox20I	TGGCCA	2 cut(s)	8, 1097
MroI	TCCGGA	1 cut(s)	157
MroNI	GCCGGC	2 cut(s)	143, 634
MroXI	GAANNNNTTC	1 cut(s)	413
MscI	TGGCCA	2 cut(s)	8, 1097
MseI	TTAA	2 cut(s)	702, 870
MslI	CAYNNNNRTG	2 cut(s)	72, 1305
Msp20I	TGGCCA	2 cut(s)	8, 1097
MspI	CCGG	8 cut(s)	140, 144, 158, 347, 418, 610, 635, 735
MspR9I	CCNGG	3 cut(s)	233, 347, 735
MvaI	CCWGG	1 cut(s)	233
MvnI	CGCG	1 cut(s)	966
NaeI	GCCGGC	2 cut(s)	145, 636
NciI	CCSGG	2 cut(s)	347, 735
NcoI	CCATGG	1 cut(s)	1098
NdeII	GATC	7 cut(s)	64, 154, 222, 316, 391, 973, 1188
NgoMIV	GCCGGC	2 cut(s)	143, 634
NlaIII	CATG	9 cut(s)	77, 383, 605, 794, 803, 1102, 1310, 1375, 1384
NlaIV	GGNNCC	7 cut(s)	148, 239, 285, 351, 517, 1341, 1342
NmeAIII	GCCGAG	4 cut(s)	366, 378, 1186, 1347
NmuCI	GTSAC	1 cut(s)	109
NspI	RCATGY	2 cut(s)	605, 1384
PagI	TCATGA	1 cut(s)	790
PceI	AGGCCT	1 cut(s)	1112
PciI	ACATGT	2 cut(s)	601, 1380
PcsI	WCGNNNNNNNCGW	1 cut(s)	393
PdiI	GCCGGC	2 cut(s)	145, 636
PdmI	GAANNNNTTC	1 cut(s)	413
PfeI	GAWTC	3 cut(s)	253, 402, 986
PkrI	GCNGC	9 cut(s)	103, 106, 359, 593, 640, 643, 721, 956, 1146
PleI	GAGTC	1 cut(s)	208
PpsI	GAGTC	1 cut(s)	208
Ppu21I	YACGTR	1 cut(s)	214
PpuMI	RGGWCCY	1 cut(s)	1340
PscI	ACATGT	2 cut(s)	601, 1380
PshBI	ATTAAT	1 cut(s)	702
PsiI	TTATAA	1 cut(s)	782
Psp1406I	AACGTT	1 cut(s)	191
Psp5II	RGGWCCY	1 cut(s)	1340
Psp6I	CCWGG	1 cut(s)	231
PspGI	CCWGG	1 cut(s)	231
PspN4I	GGNNCC	7 cut(s)	148, 239, 285, 351, 517, 1341, 1342
PspPI	GGNCC	2 cut(s)	496, 1340
PspPPI	RGGWCCY	1 cut(s)	1340
PstI	CTGCAG	1 cut(s)	261
PstNI	CAGNNNCTG	1 cut(s)	256
PsuI	RGATCY	2 cut(s)	154, 222
RsaI	GTAC	1 cut(s)	480
RsaNI	GTAC	1 cut(s)	479
RseI	CAYNNNNRTG	2 cut(s)	72, 1305
SalI	GTCGAC	1 cut(s)	1349
SaqAI	TTAA	2 cut(s)	702, 870
SatI	GCNGC	9 cut(s)	102, 105, 358, 592, 639, 642, 720, 955, 1145
Sau3AI	GATC	7 cut(s)	64, 154, 222, 316, 391, 973, 1188
Sau96I	GGNCC	2 cut(s)	496, 1340
SchI	GAGTC	1 cut(s)	209
ScrFI	CCNGG	3 cut(s)	233, 347, 735
SduI	GDGCHC	4 cut(s)	347, 464, 579, 671
SfaNI	GCATC	2 cut(s)	151, 252
SfcI	CTRYAG	1 cut(s)	257
SinI	GGWCC	1 cut(s)	1340
SmiMI	CAYNNNNRTG	2 cut(s)	72, 1305
SpeI	ACTAGT	1 cut(s)	29
Sse9I	AATT	1 cut(s)	617
SseBI	AGGCCT	1 cut(s)	1112
SspMI	CTAG	3 cut(s)	30, 1128, 1320
StuI	AGGCCT	1 cut(s)	1112
StyD4I	CCNGG	3 cut(s)	231, 345, 733
StyI	CCWWGG	1 cut(s)	1098
TaaI	ACNGT	2 cut(s)	209, 539
TaiI	ACGT	2 cut(s)	194, 216
TaqI	TCGA	3 cut(s)	665, 907, 1350
TasI	AATT	1 cut(s)	617
TauI	GCSGC	4 cut(s)	641, 644, 957, 1147
TfiI	GAWTC	3 cut(s)	253, 402, 986
Tru1I	TTAA	2 cut(s)	702, 870
Tru9I	TTAA	2 cut(s)	702, 870
TscAI	CASTG	1 cut(s)	114
TseFI	GTSAC	1 cut(s)	109
TseI	GCWGC	5 cut(s)	101, 104, 357, 591, 719
Tsp45I	GTSAC	1 cut(s)	109
TspDTI	ATGAA	2 cut(s)	559, 1028
TspRI	CASTG	1 cut(s)	114
VpaK11BI	GGWCC	1 cut(s)	1340
VspI	ATTAAT	1 cut(s)	702
XceI	RCATGY	2 cut(s)	605, 1384
XmiI	GTMKAC	1 cut(s)	1350
XmnI	GAANNNNTTC	1 cut(s)	413
XspI	CTAG	3 cut(s)	30, 1128, 1320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.