Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0006001

Physical Location & Seq

Genomic Coordinates Forward (+)

68326916 .. 68329720

Gene Structure 2805 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG449000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGCACAGAAGAAGGCACAAGGTGCCGTGGAAGTTGCTGAAGCGGGAAATACAGGATCAGGTGAAGAAGAGGGTGTTTGTGTGCCCGGAGCCGAGCTGCCTCCACCACGACCCTTGCCATGCGCTCGGCGATCTCGTCGGAATCAAGAAGCACTTCCGGCGAAAGCACAGCAACCACAAGCAATGGGTGTGCGACAAGTGCTCCAAAGGTTACGCCGTACAATCCGATTACAAGGCCCATCTCAAAACCTGTGGCACCAGAGGACATTCCTGCGACTGTGGCCGTGTGTTTTCCAGAGTGGAGAGTTTCATTGAGCACCAAGATACTTGCAGCGTGCGACATGTTGTCCGGCCAGAATTGCAGGCACTTCAGCCGGCGGCGGCCTGCTCATCACGAACAGCGTCGAGCACCAGCCCCTCCAGCGACGGCCATTTCAGCATTAATAATAACAACAATGCAGCTCCTCCATTGCCCGGATTACGAGTAATCCCAAAGCCAAATGACCAACCTGTTGTGTTTATTAGCTCTCATGAGGGGCATGATGGTAATCCTTCCACTTCTAACCACCAACAGCCACGAGAACAAGAACAAGAGCATATGCTGGAACTTAAACTCCTTCCATCGTCGGACACACAAACCTCCCCTCGAAACGAAGACGAAAACTATGCAACGCATTTGAAGCTTTCCATAGGCGGCTCATCACGCGGTGGTGATCAAAAGAATGATTCGCCACGAAGCTCATCAAGAGAAATGAACACAAACATTGGTTTTGGTGGTAGAGCAAGTCGGGAAGTGGCGAGGTTGAAAGACTTTGCCTCCGAGGAGTTGAAGTTGGCCATGGCGGAAAAGGCCTACGCCGAAGACGCCAGACGAGAAGCCAAGCGGCAAATAGAGATGGCCGAGCTGGAGTTCGCAAACGCAAAGAGGATCAGGCAACAAGCGCAGGCGGAGCTTCAAAAGGCTCAGCTACTAAAAGAGCAATCCACCAAGAAAATCAGCTCCGCCATTATGCAAATCACTTGTCCATCTTGCAAGCAACACTTCCATGCGAGTAATCCTATTAACGCAGTCGGAGTGGGACCCTCCGACGAGACGACCTCCCTCGGCATGAGTTACATGTCCTCCGCCACAACCGAAGGAGAAGGAGAACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006109 GO:0006355 GO:0007275 GO:0008150 GO:0009581 GO:0009582 GO:0009590 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009653 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009959 GO:0009965 GO:0010016 GO:0010031 GO:0010468 GO:0010556 GO:0010600 GO:0010601 GO:0010675 GO:0010817 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032350 GO:0032352 GO:0032501 GO:0032502 GO:0032879 GO:0032881 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044212 GO:0044424 GO:0044464 GO:0046885 GO:0046886 GO:0046982 GO:0046983 GO:0048366 GO:0048367 GO:0048437 GO:0048444 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050879 GO:0050896 GO:0051049 GO:0051171 GO:0051252 GO:0051606 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0090354 GO:0090355 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000012 GO:2000112 GO:2000904 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2 zf-met

Protein Analysis

384

Amino Acids

42.76

Weight (kDa)

8.93

Isoelectric Point (pI)

68.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2H2-2nd_BIRD-IDD	PF22996	22 - 56	3.5e-18	BIRD-IDD transcription factor, second C2H2 zinc finger
C2CH-3rd_BIRD-IDD	PF22995	61 - 85	3.2e-14	BIRD-IDD transcription factor, third C2HC zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006001)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22260
fragaria_vesca	FvH4_4g35820 FvH4_4g35830 FvH4_4g35830
malus_domestica	MD16G1012700.v1.1
prunus_persica	Prupe.1G338600_v2.0.a1
pyrus_communis	pycom16g01190
rosa_chinensis	RchiOBHm_Chr4g0445351 RchiOBHm_Chr4g0445361
rosa_laevigata	RLG00000005745 RLG00000005746
rosa_multiflora	Rmu_sc0000050.1_g000007 Rmu_sc0000050.1_g000008 Rmu_sc0000050.1_g000009
rosa_roxburghii	Rroxscaffold_5G00385870 Rroxscaffold_5G00385880
rosa_rugosa	Rorug04G0361000
rosa_samantha	Rh4AG422000 Rh4AG422100 Rh4BG434000 Rh4BG434100 Rh4CG448900 Rh4CG449000 Rh4DG430000 Rh4DG430100
rosa_wichuraiana	Rw4G036200 Rw4G036210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	22, 254
AccII	CGCG	1 cut(s)	705
AclWI	GGATC	2 cut(s)	63, 935
AcoI	YGGCCR	5 cut(s)	280, 350, 427, 834, 897
AcuI	CTGAAG	2 cut(s)	59, 353
AcyI	GRCGYC	1 cut(s)	864
AdeI	CACNNNGTG	2 cut(s)	22, 707
AfaI	GTAC	1 cut(s)	219
AfiI	CCNNNNNNNGG	1 cut(s)	473
AflIII	ACRYGT	2 cut(s)	340, 1116
AgsI	TTSAA	4 cut(s)	679, 805, 829, 956
AhdI	GACNNNNNGTC	1 cut(s)	344
AloI	GAACNNNNNNTCC	2 cut(s)	597, 629
AluBI	AGCT	9 cut(s)	96, 461, 525, 682, 738, 904, 952, 967, 999
AluI	AGCT	9 cut(s)	96, 461, 525, 682, 738, 904, 952, 967, 999
Alw21I	GWGCWC	3 cut(s)	203, 318, 410
Alw26I	GTCTC	1 cut(s)	1085
AlwI	GGATC	2 cut(s)	63, 935
AoxI	GGCC	8 cut(s)	234, 280, 350, 381, 427, 834, 849, 897
ApeKI	GCWGC	3 cut(s)	96, 330, 458
ArsI	GACNNNNNNTTYG	2 cut(s)	1006, 1038
AseI	ATTAAT	1 cut(s)	441
Asp700I	GAANNNNTTC	1 cut(s)	152
AspLEI	GCGC	2 cut(s)	124, 943
AspS9I	GGNCC	2 cut(s)	235, 1079
AsuC2I	CCSGG	2 cut(s)	86, 474
AsuHPI	GGTGA	2 cut(s)	73, 722
AvaII	GGWCC	1 cut(s)	1079
BaeGI	GKGCMC	1 cut(s)	86
BalI	TGGCCA	1 cut(s)	836
BanI	GGYRCC	2 cut(s)	22, 254
BauI	CACGAG	1 cut(s)	576
BbsI	GAAGAC	2 cut(s)	660, 867
Bbv12I	GWGCWC	3 cut(s)	203, 318, 410
BbvI	GCAGC	3 cut(s)	83, 342, 470
BccI	CCATC	5 cut(s)	246, 536, 628, 889, 1033
BceAI	ACGGC	4 cut(s)	10, 200, 267, 442
BcgI	CGANNNNNNTGC	2 cut(s)	647, 681
BclI	TGATCA	1 cut(s)	712
BcnI	CCSGG	2 cut(s)	86, 474
BcoDI	GTCTC	1 cut(s)	1085
BisI	GCNGC	7 cut(s)	97, 331, 378, 381, 459, 694, 884
BlpI	GCTNAGC	1 cut(s)	963
BlsI	GCNGC	7 cut(s)	98, 332, 379, 382, 460, 695, 885
Bme1390I	CCNGG	2 cut(s)	86, 474
Bme18I	GGWCC	1 cut(s)	1079
BmeRI	GACNNNNNGTC	1 cut(s)	344
BmgT120I	GGNCC	2 cut(s)	235, 1079
BmiI	GGNNCC	5 cut(s)	24, 90, 256, 1080, 1081
BmrFI	CCNGG	2 cut(s)	86, 474
BpiI	GAAGAC	2 cut(s)	660, 867
BplI	GAGNNNNNCTC	2 cut(s)	1082, 1114
BpmI	CTGGAG	2 cut(s)	403, 926
Bpu1102I	GCTNAGC	1 cut(s)	963
BpuMI	CCSGG	2 cut(s)	86, 474
BsaBI	GATNNNNATC	1 cut(s)	546
BsaHI	GRCGYC	1 cut(s)	864
BsaJI	CCNNGG	4 cut(s)	26, 819, 837, 1102
Bsc4I	CCNNNNNNNGG	1 cut(s)	473
Bse118I	RCCGGY	1 cut(s)	373
Bse3DI	GCAATG	2 cut(s)	188, 467
Bse8I	GATNNNNATC	1 cut(s)	546
BseDI	CCNNGG	4 cut(s)	26, 819, 837, 1102
BseJI	GATNNNNATC	1 cut(s)	546
BseLI	CCNNNNNNNGG	1 cut(s)	473
BseMI	GCAATG	2 cut(s)	188, 467
BseMII	CTCAG	1 cut(s)	977
BseRI	GAGGAG	2 cut(s)	453, 836
BseSI	GKGCMC	1 cut(s)	86
BseXI	GCAGC	3 cut(s)	83, 342, 470
Bsh1236I	CGCG	1 cut(s)	705
BshFI	GGCC	8 cut(s)	236, 282, 352, 383, 429, 836, 851, 899
BshNI	GGYRCC	2 cut(s)	22, 254
BsiHKAI	GWGCWC	3 cut(s)	203, 318, 410
BsiSI	CCGG	5 cut(s)	86, 157, 349, 374, 474
BslFI	GGGAC	1 cut(s)	1092
BslI	CCNNNNNNNGG	1 cut(s)	473
BsmAI	GTCTC	1 cut(s)	1085
BsmBI	CGTCTC	1 cut(s)	1085
BsmFI	GGGAC	1 cut(s)	1092
BsnI	GGCC	8 cut(s)	236, 282, 352, 383, 429, 836, 851, 899
Bsp1286I	GDGCHC	4 cut(s)	86, 203, 318, 410
Bsp143I	GATC	4 cut(s)	55, 130, 712, 927
Bsp1720I	GCTNAGC	1 cut(s)	963
Bsp19I	CCATGG	1 cut(s)	837
BspANI	GGCC	8 cut(s)	236, 282, 352, 383, 429, 836, 851, 899
BspCNI	CTCAG	1 cut(s)	976
BspFNI	CGCG	1 cut(s)	705
BspHI	TCATGA	1 cut(s)	529
BspLI	GGNNCC	5 cut(s)	24, 90, 256, 1080, 1081
BspPI	GGATC	2 cut(s)	63, 935
BspT107I	GGYRCC	2 cut(s)	22, 254
BsrDI	GCAATG	2 cut(s)	188, 467
BsrFI	RCCGGY	1 cut(s)	373
BssAI	RCCGGY	1 cut(s)	373
BssECI	CCNNGG	4 cut(s)	26, 819, 837, 1102
BssMI	GATC	4 cut(s)	55, 130, 712, 927
BssNI	GRCGYC	1 cut(s)	864
BssSI	CACGAG	1 cut(s)	576
BssT1I	CCWWGG	1 cut(s)	837
Bst2BI	CACGAG	1 cut(s)	576
Bst4CI	ACNGT	1 cut(s)	278
Bst6I	CTCTTC	1 cut(s)	62
BstACI	GRCGYC	1 cut(s)	864
BstAPI	GCANNNNNTGC	1 cut(s)	22
BstC8I	GCNNGC	6 cut(s)	335, 363, 375, 385, 945, 1034
BstDEI	CTNAG	1 cut(s)	963
BstDSI	CCRYGG	2 cut(s)	26, 837
BstFNI	CGCG	1 cut(s)	705
BstHHI	GCGC	2 cut(s)	124, 943
BstKTI	GATC	4 cut(s)	58, 133, 715, 930
BstMAI	GTCTC	1 cut(s)	1085
BstMBI	GATC	4 cut(s)	55, 130, 712, 927
BstNSI	RCATGY	2 cut(s)	344, 1120
BstSCI	CCNGG	2 cut(s)	84, 472
BstSLI	GKGCMC	1 cut(s)	86
BstUI	CGCG	1 cut(s)	705
BstV1I	GCAGC	3 cut(s)	83, 342, 470
BstV2I	GAAGAC	2 cut(s)	660, 867
BsuRI	GGCC	8 cut(s)	236, 282, 352, 383, 429, 836, 851, 899
BtgI	CCRYGG	2 cut(s)	26, 837
Cac8I	GCNNGC	6 cut(s)	335, 363, 375, 385, 945, 1034
CciI	TCATGA	1 cut(s)	529
CfoI	GCGC	2 cut(s)	124, 943
Cfr10I	RCCGGY	1 cut(s)	373
Cfr13I	GGNCC	2 cut(s)	235, 1079
CseI	GACGC	2 cut(s)	390, 872
Csp6I	GTAC	1 cut(s)	218
CspCI	CAANNNNNGTGG	4 cut(s)	95, 130, 232, 267
CviAII	CATG	8 cut(s)	119, 341, 530, 539, 838, 1046, 1108, 1117
CviQI	GTAC	1 cut(s)	218
DdeI	CTNAG	1 cut(s)	963
DpnI	GATC	4 cut(s)	57, 132, 714, 929
DpnII	GATC	4 cut(s)	55, 130, 712, 927
DraIII	CACNNNGTG	2 cut(s)	22, 707
DriI	GACNNNNNGTC	1 cut(s)	344
EaeI	YGGCCR	5 cut(s)	280, 350, 427, 834, 897
Eam1104I	CTCTTC	1 cut(s)	62
Eam1105I	GACNNNNNGTC	1 cut(s)	344
EarI	CTCTTC	1 cut(s)	62
EciI	GGCGGA	4 cut(s)	857, 962, 991, 1114
Eco130I	CCWWGG	1 cut(s)	837
Eco147I	AGGCCT	1 cut(s)	851
Eco47I	GGWCC	1 cut(s)	1079
Eco57I	CTGAAG	2 cut(s)	59, 353
EcoO109I	RGGNCCY	1 cut(s)	1079
EcoT14I	CCWWGG	1 cut(s)	837
ErhI	CCWWGG	1 cut(s)	837
Esp3I	CGTCTC	1 cut(s)	1085
FaeI	CATG	8 cut(s)	122, 344, 533, 542, 841, 1049, 1111, 1120
FalI	AAGNNNNNCTT	4 cut(s)	137, 169, 1025, 1057
FaqI	GGGAC	1 cut(s)	1092
FatI	CATG	8 cut(s)	118, 340, 529, 538, 837, 1045, 1107, 1116
FauI	CCCGC	1 cut(s)	36
FauNDI	CATATG	1 cut(s)	597
FbaI	TGATCA	1 cut(s)	712
Fnu4HI	GCNGC	7 cut(s)	97, 331, 378, 381, 459, 694, 884
Fsp4HI	GCNGC	7 cut(s)	97, 331, 378, 381, 459, 694, 884
GlaI	GCGC	2 cut(s)	123, 942
GluI	GCNGC	7 cut(s)	97, 331, 378, 381, 459, 694, 884
GsuI	CTGGAG	2 cut(s)	403, 926
HaeIII	GGCC	8 cut(s)	236, 282, 352, 383, 429, 836, 851, 899
HapII	CCGG	5 cut(s)	86, 157, 349, 374, 474
HgaI	GACGC	2 cut(s)	390, 872
HhaI	GCGC	2 cut(s)	124, 943
Hin1I	GRCGYC	1 cut(s)	864
Hin1II	CATG	8 cut(s)	122, 344, 533, 542, 841, 1049, 1111, 1120
Hin6I	GCGC	2 cut(s)	122, 941
HinP1I	GCGC	2 cut(s)	122, 941
HindIII	AAGCTT	1 cut(s)	680
HinfI	GANTC	2 cut(s)	141, 725
HpaII	CCGG	5 cut(s)	86, 157, 349, 374, 474
HphI	GGTGA	2 cut(s)	73, 722
Hpy188I	TCNGA	6 cut(s)	140, 226, 628, 820, 1073, 1087
Hpy188III	TCNNGA	6 cut(s)	145, 294, 393, 530, 744, 788
Hpy99I	CGWCG	5 cut(s)	140, 406, 428, 628, 1091
HpyAV	CCTTC	5 cut(s)	6, 561, 626, 1130, 1136
HpyCH4III	ACNGT	1 cut(s)	278
HpyCH4V	TGCA	7 cut(s)	4, 330, 361, 458, 668, 1012, 1032
HpyF3I	CTNAG	1 cut(s)	963
Hsp92I	GRCGYC	1 cut(s)	864
Hsp92II	CATG	8 cut(s)	122, 344, 533, 542, 841, 1049, 1111, 1120
HspAI	GCGC	2 cut(s)	122, 941
KflI	GGGWCCC	1 cut(s)	1079
KroI	GCCGGC	1 cut(s)	373
KroNI	GCCGGC	1 cut(s)	375
Ksp22I	TGATCA	1 cut(s)	712
Kzo9I	GATC	4 cut(s)	55, 130, 712, 927
LmnI	GCTCC	5 cut(s)	88, 206, 466, 949, 1004
Lsp1109I	GCAGC	3 cut(s)	83, 342, 470
MaeIII	GTNAC	2 cut(s)	209, 1112
MalI	GATC	4 cut(s)	57, 132, 714, 929
MboI	GATC	4 cut(s)	55, 130, 712, 927
MboII	GAAGA	5 cut(s)	21, 76, 79, 665, 872
MhlI	GDGCHC	4 cut(s)	86, 203, 318, 410
MlsI	TGGCCA	1 cut(s)	836
MluCI	AATT	1 cut(s)	356
MluNI	TGGCCA	1 cut(s)	836
MmeI	TCCRAC	4 cut(s)	118, 606, 1051, 1110
Mox20I	TGGCCA	1 cut(s)	836
MroNI	GCCGGC	1 cut(s)	373
MroXI	GAANNNNTTC	1 cut(s)	152
MscI	TGGCCA	1 cut(s)	836
MseI	TTAA	3 cut(s)	441, 609, 1062
MslI	CAYNNNNRTG	1 cut(s)	1044
Msp20I	TGGCCA	1 cut(s)	836
MspI	CCGG	5 cut(s)	86, 157, 349, 374, 474
MspR9I	CCNGG	2 cut(s)	86, 474
MvnI	CGCG	1 cut(s)	705
NaeI	GCCGGC	1 cut(s)	375
NciI	CCSGG	2 cut(s)	86, 474
NcoI	CCATGG	1 cut(s)	837
NdeI	CATATG	1 cut(s)	597
NdeII	GATC	4 cut(s)	55, 130, 712, 927
NgoMIV	GCCGGC	1 cut(s)	373
NlaIII	CATG	8 cut(s)	122, 344, 533, 542, 841, 1049, 1111, 1120
NlaIV	GGNNCC	5 cut(s)	24, 90, 256, 1080, 1081
NmeAIII	GCCGAG	4 cut(s)	105, 117, 925, 1083
NspI	RCATGY	2 cut(s)	344, 1120
PagI	TCATGA	1 cut(s)	529
PceI	AGGCCT	1 cut(s)	851
PciI	ACATGT	2 cut(s)	340, 1116
PcsI	WCGNNNNNNNCGW	1 cut(s)	132
PdiI	GCCGGC	1 cut(s)	375
PdmI	GAANNNNTTC	1 cut(s)	152
PfeI	GAWTC	2 cut(s)	141, 725
PkrI	GCNGC	7 cut(s)	98, 332, 379, 382, 460, 695, 885
PpuMI	RGGWCCY	1 cut(s)	1079
PscI	ACATGT	2 cut(s)	340, 1116
PshBI	ATTAAT	1 cut(s)	441
Psp5II	RGGWCCY	1 cut(s)	1079
PspN4I	GGNNCC	5 cut(s)	24, 90, 256, 1080, 1081
PspPI	GGNCC	2 cut(s)	235, 1079
PspPPI	RGGWCCY	1 cut(s)	1079
RsaI	GTAC	1 cut(s)	219
RsaNI	GTAC	1 cut(s)	218
RseI	CAYNNNNRTG	1 cut(s)	1044
SaqAI	TTAA	3 cut(s)	441, 609, 1062
SatI	GCNGC	7 cut(s)	97, 331, 378, 381, 459, 694, 884
Sau3AI	GATC	4 cut(s)	55, 130, 712, 927
Sau96I	GGNCC	2 cut(s)	235, 1079
ScrFI	CCNGG	2 cut(s)	86, 474
SduI	GDGCHC	4 cut(s)	86, 203, 318, 410
SinI	GGWCC	1 cut(s)	1079
SmiMI	CAYNNNNRTG	1 cut(s)	1044
Sse9I	AATT	1 cut(s)	356
SseBI	AGGCCT	1 cut(s)	851
StuI	AGGCCT	1 cut(s)	851
StyD4I	CCNGG	2 cut(s)	84, 472
StyI	CCWWGG	1 cut(s)	837
TaaI	ACNGT	1 cut(s)	278
TaqI	TCGA	2 cut(s)	404, 646
TasI	AATT	1 cut(s)	356
TauI	GCSGC	4 cut(s)	380, 383, 696, 886
TfiI	GAWTC	2 cut(s)	141, 725
Tru1I	TTAA	3 cut(s)	441, 609, 1062
Tru9I	TTAA	3 cut(s)	441, 609, 1062
TseI	GCWGC	3 cut(s)	96, 330, 458
TspDTI	ATGAA	2 cut(s)	298, 767
VpaK11BI	GGWCC	1 cut(s)	1079
VspI	ATTAAT	1 cut(s)	441
XceI	RCATGY	2 cut(s)	344, 1120
XmnI	GAANNNNTTC	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.