Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000050.1

Orthogroup ID

OG0006001

Physical Location & Seq

Genomic Coordinates Reverse (-)

28281 .. 29012

Gene Structure 732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000050.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

atgtcgtcacataatctggacctgagtgggagcaagaagaggaagagaggcgagagggttttcaggttcaagacttttggagaaaacggttatccagtcgggttcgttgcctcgtcgcttagggaaaacgtgaaagcgcttctcgaatatgggcatctggagagtaccctatgcaatagtgctactggaataaagagctggtcgttccatctccagcttcatcgtaatgctcttgtgcatctcgttctcttcgtcgtcgaagaacctattgaggcctcactgaaccgtcattgcaagcagtgccaatacgtcggctgggggcagcatatggtttgcaataagaagtatcactttgtgttgccttcgaccgacacgatggcggcggcggcttgtttgaacaactgcaaagttgccggaggcaataacaactacgatgatattccggcgggtaagtcatcgtcgttgaatttactggaattagaggggcatatcatgcatggtgtatttcactctaacgggttcgggcatttgctttgtgtcaatggggcggaaacgggttcggacttgtctggacatcagatacttgagttttgggatcgattgtgcacgggattacgagcaaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009791 GO:0009846 GO:0009856 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009987 GO:0010033 GO:0010208 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010927 GO:0010941 GO:0010942 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0022607 GO:0030198 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0042221 GO:0043062 GO:0043067 GO:0043068 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044464 GO:0044706 GO:0045229 GO:0045893 GO:0045935 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048466 GO:0048518 GO:0048522 GO:0048608 GO:0048646 GO:0048653 GO:0048654 GO:0048655 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051716 GO:0055046 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071396 GO:0071407 GO:0071495 GO:0071840 GO:0080090 GO:0085029 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD

Protein Analysis

208

Amino Acids

23.07

Weight (kDa)

8.42

Isoelectric Point (pI)

37.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006001)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22260
fragaria_vesca	FvH4_4g35820 FvH4_4g35830 FvH4_4g35830
malus_domestica	MD16G1012700.v1.1
prunus_persica	Prupe.1G338600_v2.0.a1
pyrus_communis	pycom16g01190
rosa_chinensis	RchiOBHm_Chr4g0445351 RchiOBHm_Chr4g0445361
rosa_laevigata	RLG00000005745 RLG00000005746
rosa_multiflora	Rmu_sc0000050.1_g000007 Rmu_sc0000050.1_g000008 Rmu_sc0000050.1_g000009
rosa_roxburghii	Rroxscaffold_5G00385870 Rroxscaffold_5G00385880
rosa_rugosa	Rorug04G0361000
rosa_samantha	Rh4AG422000 Rh4AG422100 Rh4BG434000 Rh4BG434100 Rh4CG448900 Rh4CG449000 Rh4DG430000 Rh4DG430100
rosa_wichuraiana	Rw4G036200 Rw4G036210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	380, 383, 386, 446, 548
AclWI	GGATC	1 cut(s)	603
AcsI	RAATTY	1 cut(s)	466
AdeI	CACNNNGTG	1 cut(s)	355
AfaI	GTAC	1 cut(s)	166
AfeI	AGCGCT	1 cut(s)	138
AgsI	TTSAA	3 cut(s)	70, 397, 466
AluBI	AGCT	2 cut(s)	198, 217
AluI	AGCT	2 cut(s)	198, 217
Alw21I	GWGCWC	1 cut(s)	608
Alw44I	GTGCAC	1 cut(s)	604
AlwI	GGATC	1 cut(s)	603
Aor51HI	AGCGCT	1 cut(s)	138
AoxI	GGCC	1 cut(s)	273
ApaLI	GTGCAC	1 cut(s)	604
ApeKI	GCWGC	1 cut(s)	322
ApoI	RAATTY	1 cut(s)	466
AspLEI	GCGC	1 cut(s)	139
AspS9I	GGNCC	1 cut(s)	19
AvaII	GGWCC	1 cut(s)	19
BaeGI	GKGCMC	1 cut(s)	608
BaeI	ACNNNNGTAYC	2 cut(s)	572, 605
Bbv12I	GWGCWC	1 cut(s)	608
BbvI	GCAGC	1 cut(s)	334
BccI	CCATC	2 cut(s)	216, 370
BfoI	RGCGCY	1 cut(s)	140
BisI	GCNGC	4 cut(s)	323, 381, 384, 387
BlsI	GCNGC	4 cut(s)	324, 382, 385, 388
Bme18I	GGWCC	1 cut(s)	19
BmgT120I	GGNCC	1 cut(s)	19
BmsI	GCATC	2 cut(s)	163, 247
BpmI	CTGGAG	2 cut(s)	179, 197
Bpu10I	CCTNAGC	1 cut(s)	119
BpuEI	CTTGAG	1 cut(s)	605
Bsa29I	ATCGAT	1 cut(s)	598
Bse1I	ACTGG	3 cut(s)	95, 190, 477
Bse3DI	GCAATG	1 cut(s)	289
BseCI	ATCGAT	1 cut(s)	598
BseMI	GCAATG	1 cut(s)	289
BseMII	CTCAG	1 cut(s)	14
BseNI	ACTGG	3 cut(s)	95, 190, 477
BseSI	GKGCMC	1 cut(s)	608
BseXI	GCAGC	1 cut(s)	334
BseYI	CCCAGC	1 cut(s)	315
Bsh1285I	CGRYCG	1 cut(s)	369
BshFI	GGCC	1 cut(s)	275
BshVI	ATCGAT	1 cut(s)	598
BsiEI	CGRYCG	1 cut(s)	369
BsiHKAI	GWGCWC	1 cut(s)	608
BsiSI	CCGG	2 cut(s)	414, 443
BsnI	GGCC	1 cut(s)	275
Bsp1286I	GDGCHC	1 cut(s)	608
Bsp143I	GATC	1 cut(s)	595
BspACI	CCGC	5 cut(s)	380, 383, 386, 446, 548
BspANI	GGCC	1 cut(s)	275
BspCNI	CTCAG	1 cut(s)	15
BspDI	ATCGAT	1 cut(s)	598
BspPI	GGATC	1 cut(s)	603
BsrDI	GCAATG	1 cut(s)	289
BsrI	ACTGG	3 cut(s)	95, 190, 477
BssMI	GATC	1 cut(s)	595
Bst4CI	ACNGT	2 cut(s)	89, 287
Bst6I	CTCTTC	3 cut(s)	32, 38, 254
BstAPI	GCANNNNNTGC	2 cut(s)	300, 493
BstC8I	GCNNGC	1 cut(s)	296
BstDEI	CTNAG	2 cut(s)	23, 119
BstH2I	RGCGCY	1 cut(s)	140
BstHHI	GCGC	1 cut(s)	139
BstKTI	GATC	1 cut(s)	598
BstMBI	GATC	1 cut(s)	595
BstMCI	CGRYCG	1 cut(s)	369
BstMWI	GCNNNNNNNGC	3 cut(s)	300, 386, 493
BstSLI	GKGCMC	1 cut(s)	608
BstV1I	GCAGC	1 cut(s)	334
Bsu15I	ATCGAT	1 cut(s)	598
BsuRI	GGCC	1 cut(s)	275
BsuTUI	ATCGAT	1 cut(s)	598
BtsI	GCAGTG	1 cut(s)	305
BtsIMutI	CAGTG	2 cut(s)	278, 305
Cac8I	GCNNGC	1 cut(s)	296
CfoI	GCGC	1 cut(s)	139
Cfr13I	GGNCC	1 cut(s)	19
ClaI	ATCGAT	1 cut(s)	598
Csp6I	GTAC	1 cut(s)	165
CviAII	CATG	2 cut(s)	493, 497
CviJI	RGCY	5 cut(s)	198, 217, 275, 315, 389
CviKI_1	RGCY	5 cut(s)	198, 217, 275, 315, 389
CviQI	GTAC	1 cut(s)	165
DdeI	CTNAG	2 cut(s)	23, 119
DpnI	GATC	1 cut(s)	597
DpnII	GATC	1 cut(s)	595
DraIII	CACNNNGTG	1 cut(s)	355
Eam1104I	CTCTTC	3 cut(s)	32, 38, 254
EarI	CTCTTC	3 cut(s)	32, 38, 254
EciI	GGCGGA	1 cut(s)	563
Eco147I	AGGCCT	1 cut(s)	275
Eco47I	GGWCC	1 cut(s)	19
Eco47III	AGCGCT	1 cut(s)	138
EcoT22I	ATGCAT	1 cut(s)	498
FaeI	CATG	2 cut(s)	496, 500
FaiI	YATR	8 cut(s)	12, 150, 172, 327, 329, 489, 494, 498
FalI	AAGNNNNNCTT	2 cut(s)	335, 367
FatI	CATG	2 cut(s)	492, 496
FauI	CCCGC	1 cut(s)	439
FauNDI	CATATG	1 cut(s)	327
Fnu4HI	GCNGC	4 cut(s)	323, 381, 384, 387
Fsp4HI	GCNGC	4 cut(s)	323, 381, 384, 387
GlaI	GCGC	1 cut(s)	138
GluI	GCNGC	4 cut(s)	323, 381, 384, 387
GsaI	CCCAGC	1 cut(s)	319
GsuI	CTGGAG	2 cut(s)	179, 197
HaeII	RGCGCY	1 cut(s)	140
HaeIII	GGCC	1 cut(s)	275
HapII	CCGG	2 cut(s)	414, 443
HhaI	GCGC	1 cut(s)	139
Hin1II	CATG	2 cut(s)	496, 500
Hin6I	GCGC	1 cut(s)	137
HinP1I	GCGC	1 cut(s)	137
HpaII	CCGG	2 cut(s)	414, 443
Hpy166II	GTNNAC	1 cut(s)	606
Hpy188I	TCNGA	2 cut(s)	562, 579
Hpy188III	TCNNGA	5 cut(s)	17, 70, 143, 158, 570
Hpy8I	GTNNAC	1 cut(s)	606
Hpy99I	CGWCG	5 cut(s)	118, 257, 260, 314, 463
HpyAV	CCTTC	1 cut(s)	372
HpyCH4III	ACNGT	2 cut(s)	89, 287
HpyCH4IV	ACGT	2 cut(s)	129, 309
HpyCH4V	TGCA	7 cut(s)	174, 238, 294, 336, 405, 496, 606
HpyF10VI	GCNNNNNNNGC	3 cut(s)	300, 386, 493
HpyF3I	CTNAG	2 cut(s)	23, 119
HpySE526I	ACGT	2 cut(s)	129, 309
Hsp92II	CATG	2 cut(s)	496, 500
HspAI	GCGC	1 cut(s)	137
Kzo9I	GATC	1 cut(s)	595
LmnI	GCTCC	1 cut(s)	30
Lsp1109I	GCAGC	1 cut(s)	334
LweI	GCATC	2 cut(s)	163, 247
MaeII	ACGT	2 cut(s)	129, 309
MaeIII	GTNAC	1 cut(s)	6
MalI	GATC	1 cut(s)	597
MboI	GATC	1 cut(s)	595
MboII	GAAGA	4 cut(s)	49, 55, 241, 272
MhlI	GDGCHC	1 cut(s)	608
MluCI	AATT	2 cut(s)	466, 476
MnlI	CCTC	8 cut(s)	33, 41, 48, 121, 265, 286, 410, 475
Mph1103I	ATGCAT	1 cut(s)	498
MslI	CAYNNNNRTG	1 cut(s)	225
MspI	CCGG	2 cut(s)	414, 443
MwoI	GCNNNNNNNGC	3 cut(s)	300, 386, 493
NdeI	CATATG	1 cut(s)	327
NdeII	GATC	1 cut(s)	595
NlaIII	CATG	2 cut(s)	496, 500
NmuCI	GTSAC	1 cut(s)	6
NsiI	ATGCAT	1 cut(s)	498
PceI	AGGCCT	1 cut(s)	275
PcsI	WCGNNNNNNNCGW	2 cut(s)	249, 371
PkrI	GCNGC	4 cut(s)	324, 382, 385, 388
PspFI	CCCAGC	1 cut(s)	315
PspPI	GGNCC	1 cut(s)	19
RsaI	GTAC	1 cut(s)	166
RsaNI	GTAC	1 cut(s)	165
RseI	CAYNNNNRTG	1 cut(s)	225
SatI	GCNGC	4 cut(s)	323, 381, 384, 387
Sau3AI	GATC	1 cut(s)	595
Sau96I	GGNCC	1 cut(s)	19
SduI	GDGCHC	1 cut(s)	608
SetI	ASST	8 cut(s)	24, 68, 132, 200, 219, 268, 312, 626
SfaNI	GCATC	2 cut(s)	163, 247
SinI	GGWCC	1 cut(s)	19
SmiMI	CAYNNNNRTG	1 cut(s)	225
SmlI	CTYRAG	1 cut(s)	584
SmoI	CTYRAG	1 cut(s)	584
Sse9I	AATT	2 cut(s)	466, 476
SseBI	AGGCCT	1 cut(s)	275
SsiI	CCGC	5 cut(s)	380, 383, 386, 446, 548
StuI	AGGCCT	1 cut(s)	275
TaaI	ACNGT	2 cut(s)	89, 287
TaiI	ACGT	2 cut(s)	132, 312
TaqI	TCGA	4 cut(s)	144, 258, 365, 598
TaqII	GACCGA	1 cut(s)	383
TasI	AATT	2 cut(s)	466, 476
TauI	GCSGC	3 cut(s)	383, 386, 389
TscAI	CASTG	2 cut(s)	285, 305
TseFI	GTSAC	1 cut(s)	6
TseI	GCWGC	1 cut(s)	322
Tsp45I	GTSAC	1 cut(s)	6
TspDTI	ATGAA	1 cut(s)	209
TspRI	CASTG	2 cut(s)	285, 305
VneI	GTGCAC	1 cut(s)	604
VpaK11BI	GGWCC	1 cut(s)	19
XapI	RAATTY	1 cut(s)	466
Zsp2I	ATGCAT	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.